data_3IKD # _model_server_result.job_id Lg5b1iDczk6emkktCE81aA _model_server_result.datetime_utc '2024-11-22 13:30:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ikd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 3IKD # _exptl.entry_id 3IKD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 389.362 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2-[(1-benzothiophen-2-ylcarbonyl)amino]-3-phenylpropyl phosphate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.297 _cell.angle_gamma 90 _cell.entry_id 3IKD _cell.length_a 117.354 _cell.length_b 36.028 _cell.length_c 51.281 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IKD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C18 H16 N O5 P S -2' _chem_comp.formula_weight 389.362 _chem_comp.id J9Z _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2-[(1-benzothiophen-2-ylcarbonyl)amino]-3-phenylpropyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 J9Z doub 173 n y C1 C6 J9Z sing 174 n y C1 H1 J9Z sing 175 n n N1 C8 J9Z sing 176 n n N1 C17 J9Z sing 177 n n N1 HN1 J9Z sing 178 n n O1 C17 J9Z doub 179 n n P1 O2 J9Z sing 180 n n P1 O3 J9Z sing 181 n n P1 O4 J9Z doub 182 n n P1 O5 J9Z sing 183 n n C2 C3 J9Z sing 184 n y C2 H2 J9Z sing 185 n n C3 C4 J9Z doub 186 n y C3 H3 J9Z sing 187 n n O3 C18 J9Z sing 188 n n S3 C13 J9Z sing 189 n y S3 C16 J9Z sing 190 n y C4 C5 J9Z sing 191 n y C4 H4 J9Z sing 192 n n C5 C6 J9Z doub 193 n y C5 H5 J9Z sing 194 n n C6 C7 J9Z sing 195 n n C7 C8 J9Z sing 196 n n C7 H7 J9Z sing 197 n n C7 H7A J9Z sing 198 n n C8 C18 J9Z sing 199 n n C8 H8 J9Z sing 200 n n C9 C10 J9Z doub 201 n y C9 C14 J9Z sing 202 n y C9 H9 J9Z sing 203 n n C10 C11 J9Z sing 204 n y C10 H10 J9Z sing 205 n n C11 C12 J9Z doub 206 n y C11 H11 J9Z sing 207 n n C12 C13 J9Z sing 208 n y C12 H12 J9Z sing 209 n n C13 C14 J9Z doub 210 n y C14 C15 J9Z sing 211 n y C15 C16 J9Z doub 212 n y C15 H15 J9Z sing 213 n n C16 C17 J9Z sing 214 n n C18 H18 J9Z sing 215 n n C18 H18A J9Z sing 216 n n # _atom_sites.entry_id 3IKD _atom_sites.fract_transf_matrix[1][1] 0.008521 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001548 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027756 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01982 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 J9Z A 1 501 501 J9Z J9Z . D 2 J9Z B 1 502 502 J9Z J9Z . E 3 HOH A 1 1 1 HOH WAT . E 3 HOH A 2 2 2 HOH WAT . E 3 HOH A 3 3 3 HOH WAT . E 3 HOH A 4 4 4 HOH WAT . E 3 HOH A 5 5 5 HOH WAT . E 3 HOH A 6 7 7 HOH WAT . E 3 HOH A 7 8 8 HOH WAT . E 3 HOH A 8 9 9 HOH WAT . E 3 HOH A 9 11 11 HOH WAT . E 3 HOH A 10 12 12 HOH WAT . E 3 HOH A 11 13 13 HOH WAT . E 3 HOH A 12 15 15 HOH WAT . E 3 HOH A 13 18 18 HOH WAT . E 3 HOH A 14 19 19 HOH WAT . E 3 HOH A 15 20 20 HOH WAT . E 3 HOH A 16 21 21 HOH WAT . E 3 HOH A 17 23 23 HOH WAT . E 3 HOH A 18 27 27 HOH WAT . E 3 HOH A 19 28 28 HOH WAT . E 3 HOH A 20 30 30 HOH WAT . E 3 HOH A 21 31 31 HOH WAT . E 3 HOH A 22 32 32 HOH WAT . E 3 HOH A 23 34 34 HOH WAT . E 3 HOH A 24 35 35 HOH WAT . E 3 HOH A 25 36 36 HOH WAT . E 3 HOH A 26 38 38 HOH WAT . E 3 HOH A 27 39 39 HOH WAT . E 3 HOH A 28 40 40 HOH WAT . E 3 HOH A 29 164 42 HOH WAT . E 3 HOH A 30 165 43 HOH WAT . E 3 HOH A 31 166 44 HOH WAT . E 3 HOH A 32 167 48 HOH WAT . E 3 HOH A 33 168 49 HOH WAT . E 3 HOH A 34 169 50 HOH WAT . E 3 HOH A 35 170 51 HOH WAT . E 3 HOH A 36 171 52 HOH WAT . E 3 HOH A 37 172 53 HOH WAT . E 3 HOH A 38 173 55 HOH WAT . E 3 HOH A 39 174 56 HOH WAT . E 3 HOH A 40 175 58 HOH WAT . E 3 HOH A 41 176 59 HOH WAT . E 3 HOH A 42 177 61 HOH WAT . E 3 HOH A 43 178 62 HOH WAT . E 3 HOH A 44 179 64 HOH WAT . E 3 HOH A 45 180 65 HOH WAT . E 3 HOH A 46 181 68 HOH WAT . E 3 HOH A 47 182 72 HOH WAT . E 3 HOH A 48 183 73 HOH WAT . E 3 HOH A 49 184 76 HOH WAT . E 3 HOH A 50 185 77 HOH WAT . E 3 HOH A 51 186 83 HOH WAT . E 3 HOH A 52 187 84 HOH WAT . E 3 HOH A 53 188 87 HOH WAT . E 3 HOH A 54 189 91 HOH WAT . E 3 HOH A 55 190 103 HOH WAT . E 3 HOH A 56 191 93 HOH WAT . E 3 HOH A 57 192 94 HOH WAT . E 3 HOH A 58 193 95 HOH WAT . E 3 HOH A 59 194 98 HOH WAT . E 3 HOH A 60 195 104 HOH WAT . E 3 HOH A 61 196 106 HOH WAT . E 3 HOH A 62 197 111 HOH WAT . E 3 HOH A 63 198 114 HOH WAT . E 3 HOH A 64 199 115 HOH WAT . E 3 HOH A 65 200 117 HOH WAT . E 3 HOH A 66 201 119 HOH WAT . E 3 HOH A 67 202 120 HOH WAT . E 3 HOH A 68 203 121 HOH WAT . E 3 HOH A 69 204 123 HOH WAT . E 3 HOH A 70 205 130 HOH WAT . E 3 HOH A 71 206 132 HOH WAT . E 3 HOH A 72 207 133 HOH WAT . E 3 HOH A 73 208 135 HOH WAT . E 3 HOH A 74 209 105 HOH WAT . E 3 HOH A 75 210 142 HOH WAT . E 3 HOH A 76 211 145 HOH WAT . E 3 HOH A 77 212 146 HOH WAT . E 3 HOH A 78 213 147 HOH WAT . E 3 HOH A 79 214 149 HOH WAT . E 3 HOH A 80 216 151 HOH WAT . E 3 HOH A 81 217 152 HOH WAT . E 3 HOH A 82 218 153 HOH WAT . E 3 HOH A 83 219 154 HOH WAT . E 3 HOH A 84 220 155 HOH WAT . F 3 HOH B 1 6 6 HOH WAT . F 3 HOH B 2 10 10 HOH WAT . F 3 HOH B 3 14 14 HOH WAT . F 3 HOH B 4 16 16 HOH WAT . F 3 HOH B 5 17 17 HOH WAT . F 3 HOH B 6 22 22 HOH WAT . F 3 HOH B 7 24 24 HOH WAT . F 3 HOH B 8 25 25 HOH WAT . F 3 HOH B 9 26 26 HOH WAT . F 3 HOH B 10 29 29 HOH WAT . F 3 HOH B 11 33 33 HOH WAT . F 3 HOH B 12 37 37 HOH WAT . F 3 HOH B 13 164 41 HOH WAT . F 3 HOH B 14 165 45 HOH WAT . F 3 HOH B 15 166 46 HOH WAT . F 3 HOH B 16 167 47 HOH WAT . F 3 HOH B 17 168 54 HOH WAT . F 3 HOH B 18 169 57 HOH WAT . F 3 HOH B 19 170 60 HOH WAT . F 3 HOH B 20 171 63 HOH WAT . F 3 HOH B 21 172 66 HOH WAT . F 3 HOH B 22 173 67 HOH WAT . F 3 HOH B 23 174 69 HOH WAT . F 3 HOH B 24 175 70 HOH WAT . F 3 HOH B 25 176 71 HOH WAT . F 3 HOH B 26 177 74 HOH WAT . F 3 HOH B 27 178 75 HOH WAT . F 3 HOH B 28 179 78 HOH WAT . F 3 HOH B 29 180 79 HOH WAT . F 3 HOH B 30 181 80 HOH WAT . F 3 HOH B 31 182 81 HOH WAT . F 3 HOH B 32 183 82 HOH WAT . F 3 HOH B 33 184 85 HOH WAT . F 3 HOH B 34 185 86 HOH WAT . F 3 HOH B 35 186 88 HOH WAT . F 3 HOH B 36 187 89 HOH WAT . F 3 HOH B 37 188 90 HOH WAT . F 3 HOH B 38 189 96 HOH WAT . F 3 HOH B 39 190 92 HOH WAT . F 3 HOH B 40 191 99 HOH WAT . F 3 HOH B 41 192 100 HOH WAT . F 3 HOH B 42 193 101 HOH WAT . F 3 HOH B 43 194 102 HOH WAT . F 3 HOH B 44 195 97 HOH WAT . F 3 HOH B 45 196 127 HOH WAT . F 3 HOH B 46 197 107 HOH WAT . F 3 HOH B 47 198 108 HOH WAT . F 3 HOH B 48 199 109 HOH WAT . F 3 HOH B 49 200 110 HOH WAT . F 3 HOH B 50 201 112 HOH WAT . F 3 HOH B 51 202 113 HOH WAT . F 3 HOH B 52 203 116 HOH WAT . F 3 HOH B 53 204 118 HOH WAT . F 3 HOH B 54 205 122 HOH WAT . F 3 HOH B 55 206 124 HOH WAT . F 3 HOH B 56 207 125 HOH WAT . F 3 HOH B 57 208 126 HOH WAT . F 3 HOH B 58 209 138 HOH WAT . F 3 HOH B 59 210 128 HOH WAT . F 3 HOH B 60 211 129 HOH WAT . F 3 HOH B 61 212 131 HOH WAT . F 3 HOH B 62 213 134 HOH WAT . F 3 HOH B 63 214 136 HOH WAT . F 3 HOH B 64 215 150 HOH WAT . F 3 HOH B 65 216 139 HOH WAT . F 3 HOH B 66 217 140 HOH WAT . F 3 HOH B 67 218 141 HOH WAT . F 3 HOH B 68 219 143 HOH WAT . F 3 HOH B 69 220 144 HOH WAT . F 3 HOH B 70 221 148 HOH WAT . F 3 HOH B 71 222 156 HOH WAT . F 3 HOH B 72 223 157 HOH WAT . F 3 HOH B 73 224 158 HOH WAT . F 3 HOH B 74 225 137 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 J9Z . . . C 2 13.883 6.574 1.167 1 18.35 ? C1 J9Z 501 A 1 HETATM 2 N N1 J9Z . . . C 2 13.132 3.469 1.055 1 23.07 ? N1 J9Z 501 A 1 HETATM 3 O O1 J9Z . . . C 2 12.377 4.322 2.95 1 23.54 ? O1 J9Z 501 A 1 HETATM 4 P P1 J9Z . . . C 2 16.803 0.769 2.992 1 22.36 ? P1 J9Z 501 A 1 HETATM 5 C C2 J9Z . . . C 2 13.523 7.854 1.584 1 17.57 ? C2 J9Z 501 A 1 HETATM 6 O O2 J9Z . . . C 2 15.776 0.762 4.14 1 22.32 ? O2 J9Z 501 A 1 HETATM 7 C C3 J9Z . . . C 2 14.217 8.466 2.626 1 17.42 ? C3 J9Z 501 A 1 HETATM 8 O O3 J9Z . . . C 2 16.414 1.994 2.041 1 21.5 ? O3 J9Z 501 A 1 HETATM 9 S S3 J9Z . . . C 2 9.64 5.22 1.758 1 23.74 ? S3 J9Z 501 A 1 HETATM 10 C C4 J9Z . . . C 2 15.262 7.773 3.244 1 18.07 ? C4 J9Z 501 A 1 HETATM 11 O O4 J9Z . . . C 2 18.09 1.214 3.615 1 23.17 ? O4 J9Z 501 A 1 HETATM 12 C C5 J9Z . . . C 2 15.621 6.492 2.828 1 16.36 ? C5 J9Z 501 A 1 HETATM 13 O O5 J9Z . . . C 2 16.712 -0.5 2.28 1 20.82 ? O5 J9Z 501 A 1 HETATM 14 C C6 J9Z . . . C 2 14.935 5.883 1.78 1 19.58 ? C6 J9Z 501 A 1 HETATM 15 C C7 J9Z . . . C 2 15.371 4.552 1.288 1 20 ? C7 J9Z 501 A 1 HETATM 16 C C8 J9Z . . . C 2 14.483 3.332 1.668 1 23.27 ? C8 J9Z 501 A 1 HETATM 17 C C9 J9Z . . . C 2 8.696 3.529 -1.661 1 22.24 ? C9 J9Z 501 A 1 HETATM 18 C C10 J9Z . . . C 2 7.409 4.002 -2 1 21.54 ? C10 J9Z 501 A 1 HETATM 19 C C11 J9Z . . . C 2 6.753 4.91 -1.178 1 21.07 ? C11 J9Z 501 A 1 HETATM 20 C C12 J9Z . . . C 2 7.383 5.329 0.007 1 22.75 ? C12 J9Z 501 A 1 HETATM 21 C C13 J9Z . . . C 2 8.664 4.871 0.374 1 22.57 ? C13 J9Z 501 A 1 HETATM 22 C C14 J9Z . . . C 2 9.331 3.942 -0.484 1 21.56 ? C14 J9Z 501 A 1 HETATM 23 C C15 J9Z . . . C 2 10.604 3.567 0.011 1 22.2 ? C15 J9Z 501 A 1 HETATM 24 C C16 J9Z . . . C 2 10.882 4.223 1.235 1 23.63 ? C16 J9Z 501 A 1 HETATM 25 C C17 J9Z . . . C 2 12.156 4.042 1.763 1 23.77 ? C17 J9Z 501 A 1 HETATM 26 C C18 J9Z . . . C 2 15.172 1.987 1.282 1 21.74 ? C18 J9Z 501 A 1 HETATM 27 H H3 J9Z . . . C 2 13.943 9.455 2.951 1 15 ? H3 J9Z 501 A 1 HETATM 28 H H1 J9Z . . . C 2 13.335 6.104 0.37 1 15 ? H1 J9Z 501 A 1 HETATM 29 H H5 J9Z . . . C 2 16.411 5.971 3.341 1 15 ? H5 J9Z 501 A 1 HETATM 30 H H4 J9Z . . . C 2 15.815 8.249 4.045 1 15 ? H4 J9Z 501 A 1 HETATM 31 H H7 J9Z . . . C 2 15.405 4.571 0.2 1 15 ? H7 J9Z 501 A 1 HETATM 32 H H2 J9Z . . . C 2 12.714 8.379 1.105 1 15 ? H2 J9Z 501 A 1 HETATM 33 H H7A J9Z . . . C 2 16.375 4.368 1.642 1 15 ? H7A J9Z 501 A 1 HETATM 34 H H8 J9Z . . . C 2 14.389 3.317 2.754 1 15 ? H8 J9Z 501 A 1 HETATM 35 H H9 J9Z . . . C 2 9.177 2.781 -2.266 1 15 ? H9 J9Z 501 A 1 HETATM 36 H H10 J9Z . . . C 2 6.918 3.615 -2.874 1 15 ? H10 J9Z 501 A 1 HETATM 37 H H11 J9Z . . . C 2 5.753 5.253 -1.417 1 15 ? H11 J9Z 501 A 1 HETATM 38 H H12 J9Z . . . C 2 6.878 6.009 0.674 1 15 ? H12 J9Z 501 A 1 HETATM 39 H H15 J9Z . . . C 2 11.254 2.831 -0.437 1 15 ? H15 J9Z 501 A 1 HETATM 40 H HN1 J9Z . . . C 2 12.882 2.986 0.245 1 15 ? HN1 J9Z 501 A 1 HETATM 41 H H18 J9Z . . . C 2 15.365 1.963 0.222 1 15 ? H18 J9Z 501 A 1 HETATM 42 H H18A J9Z . . . C 2 14.553 1.151 1.556 1 15 ? H18A J9Z 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 42 #