data_3IKG # _model_server_result.job_id zNfWi2yh_VMTuEvtpHNnpw _model_server_result.datetime_utc '2024-11-22 09:33:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ikg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2}' # _entry.id 3IKG # _exptl.entry_id 3IKG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 403.389 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2-[(1-benzothiophen-2-ylcarbonyl)amino]-3-(3-methylphenyl)propyl phosphate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.4 _cell.angle_gamma 90 _cell.entry_id 3IKG _cell.length_a 118.255 _cell.length_b 36.53 _cell.length_c 51.32 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IKG _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C19 H18 N O5 P S -2' _chem_comp.formula_weight 403.389 _chem_comp.id J8Z _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2-[(1-benzothiophen-2-ylcarbonyl)amino]-3-(3-methylphenyl)propyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 J8Z sing 173 n n N1 C5 J8Z sing 174 n n C2 C3 J8Z sing 175 n n C2 C20 J8Z sing 176 n n C3 O4 J8Z sing 177 n n O4 P7 J8Z sing 178 n n C5 O6 J8Z doub 179 n n C5 C11 J8Z sing 180 n n P7 O8 J8Z doub 181 n n P7 O9 J8Z sing 182 n n P7 O10 J8Z sing 183 n n C11 C12 J8Z doub 184 n y C11 S15 J8Z sing 185 n y C12 C13 J8Z sing 186 n y C13 C14 J8Z doub 187 n y C13 C16 J8Z sing 188 n y C14 S15 J8Z sing 189 n y C14 C19 J8Z sing 190 n y C16 C17 J8Z doub 191 n y C17 C18 J8Z sing 192 n y C18 C19 J8Z doub 193 n y C20 C22 J8Z sing 194 n n C21 C22 J8Z doub 195 n y C21 C26 J8Z sing 196 n y C22 C23 J8Z sing 197 n y C23 C24 J8Z doub 198 n y C24 C25 J8Z sing 199 n y C24 C27 J8Z sing 200 n n C25 C26 J8Z doub 201 n y N1 HN1 J8Z sing 202 n n C2 H2 J8Z sing 203 n n C3 H3 J8Z sing 204 n n C3 H3A J8Z sing 205 n n C12 H12 J8Z sing 206 n n C16 H16 J8Z sing 207 n n C17 H17 J8Z sing 208 n n C18 H18 J8Z sing 209 n n C19 H19 J8Z sing 210 n n C20 H20 J8Z sing 211 n n C20 H20A J8Z sing 212 n n C21 H21 J8Z sing 213 n n C23 H23 J8Z sing 214 n n C25 H25 J8Z sing 215 n n C26 H26 J8Z sing 216 n n C27 H27 J8Z sing 217 n n C27 H27A J8Z sing 218 n n C27 H27B J8Z sing 219 n n # _atom_sites.entry_id 3IKG _atom_sites.fract_transf_matrix[1][1] 0.008456 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001552 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027375 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019811 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 J8Z A 1 1 1 J8Z J8Z . D 2 J8Z B 1 2 2 J8Z J8Z . E 3 HOH A 1 4 4 HOH HOH . E 3 HOH A 2 5 5 HOH HOH . E 3 HOH A 3 6 6 HOH HOH . E 3 HOH A 4 7 7 HOH HOH . E 3 HOH A 5 8 8 HOH HOH . E 3 HOH A 6 9 9 HOH HOH . E 3 HOH A 7 11 11 HOH HOH . E 3 HOH A 8 13 13 HOH HOH . E 3 HOH A 9 14 14 HOH HOH . E 3 HOH A 10 15 15 HOH HOH . E 3 HOH A 11 16 16 HOH HOH . E 3 HOH A 12 18 18 HOH HOH . E 3 HOH A 13 20 20 HOH HOH . E 3 HOH A 14 22 22 HOH HOH . E 3 HOH A 15 23 23 HOH HOH . E 3 HOH A 16 24 24 HOH HOH . E 3 HOH A 17 25 25 HOH HOH . E 3 HOH A 18 26 26 HOH HOH . E 3 HOH A 19 27 27 HOH HOH . E 3 HOH A 20 28 28 HOH HOH . E 3 HOH A 21 30 30 HOH HOH . E 3 HOH A 22 31 31 HOH HOH . E 3 HOH A 23 33 33 HOH HOH . E 3 HOH A 24 34 34 HOH HOH . E 3 HOH A 25 35 35 HOH HOH . E 3 HOH A 26 37 37 HOH HOH . E 3 HOH A 27 38 38 HOH HOH . E 3 HOH A 28 39 39 HOH HOH . E 3 HOH A 29 40 40 HOH HOH . E 3 HOH A 30 164 164 HOH HOH . E 3 HOH A 31 165 165 HOH HOH . E 3 HOH A 32 166 41 HOH HOH . E 3 HOH A 33 167 167 HOH HOH . E 3 HOH A 34 168 42 HOH HOH . E 3 HOH A 35 169 43 HOH HOH . E 3 HOH A 36 170 44 HOH HOH . E 3 HOH A 37 171 45 HOH HOH . E 3 HOH A 38 172 46 HOH HOH . E 3 HOH A 39 173 47 HOH HOH . E 3 HOH A 40 174 48 HOH HOH . E 3 HOH A 41 175 49 HOH HOH . E 3 HOH A 42 176 50 HOH HOH . E 3 HOH A 43 177 51 HOH HOH . E 3 HOH A 44 178 54 HOH HOH . E 3 HOH A 45 179 55 HOH HOH . E 3 HOH A 46 180 56 HOH HOH . E 3 HOH A 47 181 57 HOH HOH . E 3 HOH A 48 182 58 HOH HOH . E 3 HOH A 49 183 59 HOH HOH . E 3 HOH A 50 184 62 HOH HOH . E 3 HOH A 51 185 63 HOH HOH . E 3 HOH A 52 186 64 HOH HOH . E 3 HOH A 53 187 65 HOH HOH . E 3 HOH A 54 188 66 HOH HOH . E 3 HOH A 55 189 67 HOH HOH . E 3 HOH A 56 190 68 HOH HOH . E 3 HOH A 57 191 69 HOH HOH . E 3 HOH A 58 192 70 HOH HOH . E 3 HOH A 59 193 71 HOH HOH . E 3 HOH A 60 194 75 HOH HOH . E 3 HOH A 61 195 78 HOH HOH . E 3 HOH A 62 196 79 HOH HOH . E 3 HOH A 63 197 81 HOH HOH . E 3 HOH A 64 198 82 HOH HOH . E 3 HOH A 65 199 85 HOH HOH . E 3 HOH A 66 200 86 HOH HOH . E 3 HOH A 67 201 87 HOH HOH . E 3 HOH A 68 202 88 HOH HOH . E 3 HOH A 69 203 90 HOH HOH . E 3 HOH A 70 204 91 HOH HOH . E 3 HOH A 71 205 92 HOH HOH . E 3 HOH A 72 206 95 HOH HOH . E 3 HOH A 73 207 98 HOH HOH . E 3 HOH A 74 208 102 HOH HOH . E 3 HOH A 75 209 103 HOH HOH . E 3 HOH A 76 210 107 HOH HOH . E 3 HOH A 77 211 108 HOH HOH . E 3 HOH A 78 212 109 HOH HOH . E 3 HOH A 79 213 110 HOH HOH . E 3 HOH A 80 214 111 HOH HOH . E 3 HOH A 81 215 114 HOH HOH . E 3 HOH A 82 216 115 HOH HOH . E 3 HOH A 83 217 117 HOH HOH . E 3 HOH A 84 218 118 HOH HOH . E 3 HOH A 85 219 121 HOH HOH . E 3 HOH A 86 220 122 HOH HOH . E 3 HOH A 87 222 126 HOH HOH . E 3 HOH A 88 223 127 HOH HOH . E 3 HOH A 89 224 129 HOH HOH . E 3 HOH A 90 225 130 HOH HOH . E 3 HOH A 91 226 132 HOH HOH . E 3 HOH A 92 227 134 HOH HOH . E 3 HOH A 93 228 135 HOH HOH . E 3 HOH A 94 229 139 HOH HOH . E 3 HOH A 95 230 141 HOH HOH . E 3 HOH A 96 231 144 HOH HOH . E 3 HOH A 97 232 146 HOH HOH . E 3 HOH A 98 233 147 HOH HOH . E 3 HOH A 99 234 150 HOH HOH . E 3 HOH A 100 235 152 HOH HOH . E 3 HOH A 101 236 154 HOH HOH . E 3 HOH A 102 237 155 HOH HOH . E 3 HOH A 103 238 156 HOH HOH . E 3 HOH A 104 239 157 HOH HOH . E 3 HOH A 105 240 159 HOH HOH . E 3 HOH A 106 241 160 HOH HOH . E 3 HOH A 107 242 162 HOH HOH . E 3 HOH A 108 243 163 HOH HOH . F 3 HOH B 1 1 1 HOH HOH . F 3 HOH B 2 3 3 HOH HOH . F 3 HOH B 3 10 10 HOH HOH . F 3 HOH B 4 12 12 HOH HOH . F 3 HOH B 5 17 17 HOH HOH . F 3 HOH B 6 19 19 HOH HOH . F 3 HOH B 7 21 21 HOH HOH . F 3 HOH B 8 29 29 HOH HOH . F 3 HOH B 9 32 32 HOH HOH . F 3 HOH B 10 36 36 HOH HOH . F 3 HOH B 11 164 2 HOH HOH . F 3 HOH B 12 165 52 HOH HOH . F 3 HOH B 13 166 166 HOH HOH . F 3 HOH B 14 167 53 HOH HOH . F 3 HOH B 15 168 60 HOH HOH . F 3 HOH B 16 169 61 HOH HOH . F 3 HOH B 17 170 72 HOH HOH . F 3 HOH B 18 171 73 HOH HOH . F 3 HOH B 19 172 74 HOH HOH . F 3 HOH B 20 173 76 HOH HOH . F 3 HOH B 21 174 77 HOH HOH . F 3 HOH B 22 175 80 HOH HOH . F 3 HOH B 23 176 83 HOH HOH . F 3 HOH B 24 177 84 HOH HOH . F 3 HOH B 25 178 89 HOH HOH . F 3 HOH B 26 179 93 HOH HOH . F 3 HOH B 27 180 94 HOH HOH . F 3 HOH B 28 181 96 HOH HOH . F 3 HOH B 29 182 97 HOH HOH . F 3 HOH B 30 183 99 HOH HOH . F 3 HOH B 31 184 100 HOH HOH . F 3 HOH B 32 185 101 HOH HOH . F 3 HOH B 33 186 104 HOH HOH . F 3 HOH B 34 187 105 HOH HOH . F 3 HOH B 35 188 106 HOH HOH . F 3 HOH B 36 189 112 HOH HOH . F 3 HOH B 37 190 113 HOH HOH . F 3 HOH B 38 191 116 HOH HOH . F 3 HOH B 39 192 119 HOH HOH . F 3 HOH B 40 193 120 HOH HOH . F 3 HOH B 41 194 123 HOH HOH . F 3 HOH B 42 195 124 HOH HOH . F 3 HOH B 43 196 128 HOH HOH . F 3 HOH B 44 197 131 HOH HOH . F 3 HOH B 45 198 133 HOH HOH . F 3 HOH B 46 199 136 HOH HOH . F 3 HOH B 47 200 137 HOH HOH . F 3 HOH B 48 201 138 HOH HOH . F 3 HOH B 49 202 140 HOH HOH . F 3 HOH B 50 203 142 HOH HOH . F 3 HOH B 51 204 143 HOH HOH . F 3 HOH B 52 205 145 HOH HOH . F 3 HOH B 53 206 148 HOH HOH . F 3 HOH B 54 207 149 HOH HOH . F 3 HOH B 55 208 151 HOH HOH . F 3 HOH B 56 209 153 HOH HOH . F 3 HOH B 57 210 158 HOH HOH . F 3 HOH B 58 211 161 HOH HOH . F 3 HOH B 59 221 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 J8Z . . . D 2 -0.911 28.571 23.4 1 29.63 ? N1 J8Z 2 B 1 HETATM 2 C C2 J8Z . . . D 2 -0.834 28.958 24.803 1 38.71 ? C2 J8Z 2 B 1 HETATM 3 C C3 J8Z . . . D 2 -1.031 27.762 25.746 1 42.91 ? C3 J8Z 2 B 1 HETATM 4 O O4 J8Z . . . D 2 -0.548 28.169 27.034 1 46.33 ? O4 J8Z 2 B 1 HETATM 5 C C5 J8Z . . . D 2 -1.795 29.249 22.615 1 36.47 ? C5 J8Z 2 B 1 HETATM 6 O O6 J8Z . . . D 2 -2.457 30.168 23.067 1 27.05 ? O6 J8Z 2 B 1 HETATM 7 P P7 J8Z . . . D 2 -1.814 28.558 27.957 1 40.53 ? P7 J8Z 2 B 1 HETATM 8 O O8 J8Z . . . D 2 -2.308 27.327 28.616 1 42.73 ? O8 J8Z 2 B 1 HETATM 9 O O9 J8Z . . . D 2 -1.402 29.624 29.088 1 35.54 ? O9 J8Z 2 B 1 HETATM 10 O O10 J8Z . . . D 2 -2.965 29.236 27.047 1 65.56 ? O10 J8Z 2 B 1 HETATM 11 C C11 J8Z . . . D 2 -1.823 28.961 21.183 1 35.29 ? C11 J8Z 2 B 1 HETATM 12 C C12 J8Z . . . D 2 -1.422 27.862 20.516 1 28.15 ? C12 J8Z 2 B 1 HETATM 13 C C13 J8Z . . . D 2 -1.568 27.821 19.12 1 35.59 ? C13 J8Z 2 B 1 HETATM 14 C C14 J8Z . . . D 2 -2.116 28.988 18.519 1 37.31 ? C14 J8Z 2 B 1 HETATM 15 S S15 J8Z . . . D 2 -2.464 30.038 19.896 1 34.36 ? S15 J8Z 2 B 1 HETATM 16 C C16 J8Z . . . D 2 -1.217 26.765 18.255 1 43.24 ? C16 J8Z 2 B 1 HETATM 17 C C17 J8Z . . . D 2 -1.381 26.909 16.913 1 40.66 ? C17 J8Z 2 B 1 HETATM 18 C C18 J8Z . . . D 2 -1.913 28.07 16.355 1 34.94 ? C18 J8Z 2 B 1 HETATM 19 C C19 J8Z . . . D 2 -2.278 29.119 17.156 1 33.04 ? C19 J8Z 2 B 1 HETATM 20 C C20 J8Z . . . D 2 0.544 29.597 25.081 1 31.65 ? C20 J8Z 2 B 1 HETATM 21 C C21 J8Z . . . D 2 0.852 31.144 23.076 1 34.94 ? C21 J8Z 2 B 1 HETATM 22 C C22 J8Z . . . D 2 0.622 30.998 24.459 1 31.72 ? C22 J8Z 2 B 1 HETATM 23 C C23 J8Z . . . D 2 0.47 32.143 25.244 1 30.8 ? C23 J8Z 2 B 1 HETATM 24 C C24 J8Z . . . D 2 0.538 33.409 24.635 1 35.39 ? C24 J8Z 2 B 1 HETATM 25 C C25 J8Z . . . D 2 0.789 33.549 23.258 1 29.69 ? C25 J8Z 2 B 1 HETATM 26 C C26 J8Z . . . D 2 0.914 32.403 22.47 1 34.46 ? C26 J8Z 2 B 1 HETATM 27 C C27 J8Z . . . D 2 0.392 34.683 25.471 1 36.73 ? C27 J8Z 2 B 1 # _model_server_stats.io_time_ms 82 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 641 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #