data_3IL4 # _model_server_result.job_id t2LLoUnbnqhtmMAZbjlFDg _model_server_result.datetime_utc '2025-02-27 02:24:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3il4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 3IL4 # _exptl.entry_id 3IL4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.9 _cell.angle_gamma 90 _cell.entry_id 3IL4 _cell.length_a 66.751 _cell.length_b 93.295 _cell.length_c 104.254 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IL4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 7 A SER 12 1_555 A N CSO 8 A CSO 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C CSO 8 A CSO 13 1_555 A N THR 9 A THR 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C ASN 16 A ASN 21 1_555 A N CSO 17 A CSO 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C CSO 17 A CSO 22 1_555 A N VAL 18 A VAL 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 B C SER 7 B SER 12 1_555 B N CSO 8 B CSO 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 B C CSO 8 B CSO 13 1_555 B N THR 9 B THR 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 B C ASN 16 B ASN 21 1_555 B N CSO 17 B CSO 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale8 B C CSO 17 B CSO 22 1_555 B N VAL 18 B VAL 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale9 C C SER 7 C SER 12 1_555 C N CSO 8 C CSO 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 C C CSO 8 C CSO 13 1_555 C N THR 9 C THR 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale11 C C ASN 16 C ASN 21 1_555 C N CSO 17 C CSO 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale12 C C CSO 17 C CSO 22 1_555 C N VAL 18 C VAL 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 D C SER 7 D SER 12 1_555 D N CSO 8 D CSO 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 D C CSO 8 D CSO 13 1_555 D N THR 9 D THR 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 D C ASN 16 D ASN 21 1_555 D N CSO 17 D CSO 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale16 D C CSO 17 D CSO 22 1_555 D N VAL 18 D VAL 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 3IL4 _atom_sites.fract_transf_matrix[1][1] 0.014981 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001021 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010719 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009614 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ACO A 1 401 401 ACO ACO . F 2 ACO B 1 401 401 ACO ACO . G 2 ACO C 1 401 401 ACO ACO . H 2 ACO D 1 401 401 ACO ACO . I 3 HOH A 1 3 3 HOH WAT . I 3 HOH A 2 326 6 HOH WAT . I 3 HOH A 3 327 8 HOH WAT . I 3 HOH A 4 328 10 HOH WAT . I 3 HOH A 5 329 14 HOH WAT . I 3 HOH A 6 330 18 HOH WAT . I 3 HOH A 7 331 19 HOH WAT . I 3 HOH A 8 332 23 HOH WAT . I 3 HOH A 9 333 25 HOH WAT . I 3 HOH A 10 334 30 HOH WAT . I 3 HOH A 11 335 37 HOH WAT . J 3 HOH B 1 326 11 HOH WAT . J 3 HOH B 2 327 13 HOH WAT . J 3 HOH B 3 328 16 HOH WAT . J 3 HOH B 4 329 21 HOH WAT . J 3 HOH B 5 330 22 HOH WAT . J 3 HOH B 6 331 24 HOH WAT . J 3 HOH B 7 332 28 HOH WAT . J 3 HOH B 8 333 29 HOH WAT . J 3 HOH B 9 334 33 HOH WAT . J 3 HOH B 10 335 35 HOH WAT . J 3 HOH B 11 336 42 HOH WAT . J 3 HOH B 12 337 46 HOH WAT . K 3 HOH C 1 2 2 HOH WAT . K 3 HOH C 2 4 4 HOH WAT . K 3 HOH C 3 326 7 HOH WAT . K 3 HOH C 4 327 9 HOH WAT . K 3 HOH C 5 328 31 HOH WAT . K 3 HOH C 6 329 32 HOH WAT . K 3 HOH C 7 330 43 HOH WAT . L 3 HOH D 1 1 1 HOH WAT . L 3 HOH D 2 5 5 HOH WAT . L 3 HOH D 3 326 12 HOH WAT . L 3 HOH D 4 327 15 HOH WAT . L 3 HOH D 5 328 17 HOH WAT . L 3 HOH D 6 329 20 HOH WAT . L 3 HOH D 7 330 26 HOH WAT . L 3 HOH D 8 331 27 HOH WAT . L 3 HOH D 9 332 34 HOH WAT . L 3 HOH D 10 333 38 HOH WAT . L 3 HOH D 11 334 39 HOH WAT . L 3 HOH D 12 335 40 HOH WAT . L 3 HOH D 13 336 41 HOH WAT . L 3 HOH D 14 337 44 HOH WAT . L 3 HOH D 15 338 45 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . E 2 192.074 -81.574 -76.534 1 51.82 ? N1A ACO 401 A 1 HETATM 2 C C2A ACO . . . E 2 192.185 -80.331 -75.972 1 51.82 ? C2A ACO 401 A 1 HETATM 3 N N3A ACO . . . E 2 192.738 -79.267 -76.708 1 51.82 ? N3A ACO 401 A 1 HETATM 4 C C4A ACO . . . E 2 193.166 -79.507 -78.017 1 51.82 ? C4A ACO 401 A 1 HETATM 5 C C5A ACO . . . E 2 193.052 -80.816 -78.621 1 51.82 ? C5A ACO 401 A 1 HETATM 6 C C6A ACO . . . E 2 192.483 -81.882 -77.84 1 51.82 ? C6A ACO 401 A 1 HETATM 7 N N6A ACO . . . E 2 192.381 -83.095 -78.4 1 51.82 ? N6A ACO 401 A 1 HETATM 8 N N7A ACO . . . E 2 193.521 -80.767 -79.839 1 51.82 ? N7A ACO 401 A 1 HETATM 9 C C8A ACO . . . E 2 193.964 -79.458 -80.103 1 51.82 ? C8A ACO 401 A 1 HETATM 10 N N9A ACO . . . E 2 193.707 -78.741 -78.913 1 51.82 ? N9A ACO 401 A 1 HETATM 11 C C1B ACO . . . E 2 193.931 -77.352 -78.514 1 51.82 ? C1B ACO 401 A 1 HETATM 12 C C2B ACO . . . E 2 195 -76.563 -79.367 1 51.82 ? C2B ACO 401 A 1 HETATM 13 O O2B ACO . . . E 2 196.374 -76.926 -79.149 1 51.82 ? O2B ACO 401 A 1 HETATM 14 C C3B ACO . . . E 2 194.574 -75.158 -79.125 1 51.82 ? C3B ACO 401 A 1 HETATM 15 O O3B ACO . . . E 2 194.871 -74.66 -77.841 1 51.82 ? O3B ACO 401 A 1 HETATM 16 P P3B ACO . . . E 2 195.248 -73.054 -77.611 1 51.82 ? P3B ACO 401 A 1 HETATM 17 O O7A ACO . . . E 2 196.205 -72.617 -78.833 1 51.82 ? O7A ACO 401 A 1 HETATM 18 O O8A ACO . . . E 2 193.773 -72.36 -77.563 1 51.82 ? O8A ACO 401 A 1 HETATM 19 O O9A ACO . . . E 2 196.044 -73.072 -76.225 1 51.82 ? O9A ACO 401 A 1 HETATM 20 C C4B ACO . . . E 2 193.025 -75.234 -79.214 1 51.82 ? C4B ACO 401 A 1 HETATM 21 O O4B ACO . . . E 2 192.731 -76.601 -78.852 1 51.82 ? O4B ACO 401 A 1 HETATM 22 C C5B ACO . . . E 2 192.412 -74.908 -80.526 1 51.82 ? C5B ACO 401 A 1 HETATM 23 O O5B ACO . . . E 2 192.386 -73.491 -80.65 1 51.82 ? O5B ACO 401 A 1 HETATM 24 P P1A ACO . . . E 2 191.802 -72.767 -82.012 1 51.82 ? P1A ACO 401 A 1 HETATM 25 O O1A ACO . . . E 2 190.233 -72.931 -82.136 1 51.82 ? O1A ACO 401 A 1 HETATM 26 O O2A ACO . . . E 2 192.184 -71.248 -82.146 1 51.82 ? O2A ACO 401 A 1 HETATM 27 O O3A ACO . . . E 2 192.688 -73.639 -83.102 1 51.82 ? O3A ACO 401 A 1 HETATM 28 P P2A ACO . . . E 2 192.71 -73.496 -84.726 1 51.82 ? P2A ACO 401 A 1 HETATM 29 O O4A ACO . . . E 2 192.374 -72.028 -85.145 1 51.82 ? O4A ACO 401 A 1 HETATM 30 O O5A ACO . . . E 2 194.081 -73.857 -85.338 1 51.82 ? O5A ACO 401 A 1 HETATM 31 O O6A ACO . . . E 2 191.495 -74.452 -85.26 1 51.82 ? O6A ACO 401 A 1 HETATM 32 C CBP ACO . . . E 2 189.424 -75.814 -84.947 1 51.82 ? CBP ACO 401 A 1 HETATM 33 C CCP ACO . . . E 2 190.816 -75.377 -84.383 1 51.82 ? CCP ACO 401 A 1 HETATM 34 C CDP ACO . . . E 2 188.571 -74.517 -85.025 1 51.82 ? CDP ACO 401 A 1 HETATM 35 C CEP ACO . . . E 2 189.671 -76.281 -86.41 1 51.82 ? CEP ACO 401 A 1 HETATM 36 C CAP ACO . . . E 2 188.757 -77.035 -84.044 1 51.82 ? CAP ACO 401 A 1 HETATM 37 O OAP ACO . . . E 2 187.326 -76.977 -84.195 1 51.82 ? OAP ACO 401 A 1 HETATM 38 C C9P ACO . . . E 2 189.279 -78.503 -84.308 1 51.82 ? C9P ACO 401 A 1 HETATM 39 O O9P ACO . . . E 2 190.54 -78.696 -84.299 1 51.82 ? O9P ACO 401 A 1 HETATM 40 N N8P ACO . . . E 2 188.328 -79.392 -84.793 1 51.82 ? N8P ACO 401 A 1 HETATM 41 C C7P ACO . . . E 2 188.456 -80.796 -85.258 1 51.82 ? C7P ACO 401 A 1 HETATM 42 C C6P ACO . . . E 2 189.441 -81.019 -86.407 1 51.82 ? C6P ACO 401 A 1 HETATM 43 C C5P ACO . . . E 2 188.917 -80.283 -87.655 1 51.82 ? C5P ACO 401 A 1 HETATM 44 O O5P ACO . . . E 2 188.82 -79.032 -87.726 1 51.82 ? O5P ACO 401 A 1 HETATM 45 N N4P ACO . . . E 2 188.562 -80.931 -88.709 1 51.82 ? N4P ACO 401 A 1 HETATM 46 C C3P ACO . . . E 2 189.076 -80.916 -90.095 1 51.82 ? C3P ACO 401 A 1 HETATM 47 C C2P ACO . . . E 2 188.323 -82.036 -90.763 1 51.82 ? C2P ACO 401 A 1 HETATM 48 S S1P ACO . . . E 2 189.218 -83.604 -90.536 1 51.82 ? S1P ACO 401 A 1 HETATM 49 C C ACO . . . E 2 189.167 -84.218 -91.976 1 51.82 ? C ACO 401 A 1 HETATM 50 O O ACO . . . E 2 189.038 -85.479 -92.358 1 51.82 ? O ACO 401 A 1 HETATM 51 C CH3 ACO . . . E 2 189.168 -83.469 -93.461 1 51.82 ? CH3 ACO 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 51 #