data_3IL6 # _model_server_result.job_id vCVCC1-fIrxStNrFAb9RxQ _model_server_result.datetime_utc '2025-02-27 02:49:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3il6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 3IL6 # _exptl.entry_id 3IL6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 444.522 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[({4-[(3R,5S)-3,5-dimethylpiperidin-1-yl]-3-phenoxyphenyl}carbonyl)amino]benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3IL6 _cell.length_a 119.263 _cell.length_b 119.263 _cell.length_c 68.921 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IL6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_378 y-2,x+2,-z+3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -357.789 206.569575 206.763 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 112 A ALA 116 1_555 A N SCY 113 A SCY 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C SCY 113 A SCY 117 1_555 A N SER 114 A SER 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C27 H28 N2 O4' _chem_comp.formula_weight 444.522 _chem_comp.id B83 _chem_comp.mon_nstd_flag . _chem_comp.name '2-[({4-[(3R,5S)-3,5-dimethylpiperidin-1-yl]-3-phenoxyphenyl}carbonyl)amino]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-({4-[(3R,5S)-3,5-dimethylpiperidin-1-yl]-3-phenoxybenzoyl}amino)benzoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 B83 doub 70 n y C1 C6 B83 sing 71 n y C1 C7 B83 sing 72 n n C3 C2 B83 sing 73 n y N10 C2 B83 sing 74 n n C3 C4 B83 doub 75 n y C3 H3 B83 sing 76 n n C4 C5 B83 sing 77 n y C4 H4 B83 sing 78 n n C5 C6 B83 doub 79 n y C5 H5 B83 sing 80 n n C6 H6 B83 sing 81 n n O8 C7 B83 doub 82 n n C7 O9 B83 sing 83 n n O9 HO9 B83 sing 84 n n C11 N10 B83 sing 85 n n N10 HN10 B83 sing 86 n n O12 C11 B83 doub 87 n n C11 C13 B83 sing 88 n n C18 C13 B83 doub 89 n y C13 C14 B83 sing 90 n y C14 C15 B83 doub 91 n y C14 H14 B83 sing 92 n n C16 C15 B83 sing 93 n y C15 H15 B83 sing 94 n n C17 C16 B83 doub 95 n y C16 N26 B83 sing 96 n n O19 C17 B83 sing 97 n n C18 C17 B83 sing 98 n y C18 H18 B83 sing 99 n n C20 O19 B83 sing 100 n n C25 C20 B83 doub 101 n y C20 C21 B83 sing 102 n y C22 C21 B83 doub 103 n y C21 H21 B83 sing 104 n n C23 C22 B83 sing 105 n y C22 H22 B83 sing 106 n n C24 C23 B83 doub 107 n y C23 H23 B83 sing 108 n n C24 C25 B83 sing 109 n y C24 H24 B83 sing 110 n n C25 H25 B83 sing 111 n n C27 N26 B83 sing 112 n n N26 C31 B83 sing 113 n n C28 C27 B83 sing 114 n n C27 H27 B83 sing 115 n n C27 H27A B83 sing 116 n n C33 C28 B83 sing 117 n n C28 C29 B83 sing 118 n n C28 H28 B83 sing 119 n n C29 C30 B83 sing 120 n n C29 H29 B83 sing 121 n n C29 H29A B83 sing 122 n n C30 C31 B83 sing 123 n n C30 C32 B83 sing 124 n n C30 H30 B83 sing 125 n n C31 H31 B83 sing 126 n n C31 H31A B83 sing 127 n n C32 H32 B83 sing 128 n n C32 H32A B83 sing 129 n n C32 H32B B83 sing 130 n n C33 H33 B83 sing 131 n n C33 H33A B83 sing 132 n n C33 H33B B83 sing 133 n n # _atom_sites.entry_id 3IL6 _atom_sites.fract_transf_matrix[1][1] 0.008385 _atom_sites.fract_transf_matrix[1][2] 0.004841 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009682 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014509 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B83 A 1 401 401 B83 B83 . C 3 SO4 A 1 402 402 SO4 SO4 . D 3 SO4 A 1 403 403 SO4 SO4 . E 3 SO4 A 1 404 404 SO4 SO4 . F 3 SO4 A 1 405 405 SO4 SO4 . G 3 SO4 A 1 406 406 SO4 SO4 . H 3 SO4 A 1 407 407 SO4 SO4 . I 4 HOH A 1 1 1 HOH WAT . I 4 HOH A 2 2 2 HOH WAT . I 4 HOH A 3 3 3 HOH WAT . I 4 HOH A 4 4 4 HOH WAT . I 4 HOH A 5 326 5 HOH WAT . I 4 HOH A 6 327 6 HOH WAT . I 4 HOH A 7 328 7 HOH WAT . I 4 HOH A 8 329 8 HOH WAT . I 4 HOH A 9 330 9 HOH WAT . I 4 HOH A 10 331 10 HOH WAT . I 4 HOH A 11 332 11 HOH WAT . I 4 HOH A 12 333 12 HOH WAT . I 4 HOH A 13 334 13 HOH WAT . I 4 HOH A 14 335 14 HOH WAT . I 4 HOH A 15 336 15 HOH WAT . I 4 HOH A 16 337 16 HOH WAT . I 4 HOH A 17 338 17 HOH WAT . I 4 HOH A 18 339 18 HOH WAT . I 4 HOH A 19 340 19 HOH WAT . I 4 HOH A 20 341 20 HOH WAT . I 4 HOH A 21 342 21 HOH WAT . I 4 HOH A 22 343 22 HOH WAT . I 4 HOH A 23 344 23 HOH WAT . I 4 HOH A 24 345 24 HOH WAT . I 4 HOH A 25 346 25 HOH WAT . I 4 HOH A 26 347 26 HOH WAT . I 4 HOH A 27 348 27 HOH WAT . I 4 HOH A 28 349 28 HOH WAT . I 4 HOH A 29 350 29 HOH WAT . I 4 HOH A 30 351 30 HOH WAT . I 4 HOH A 31 352 31 HOH WAT . I 4 HOH A 32 353 32 HOH WAT . I 4 HOH A 33 354 33 HOH WAT . I 4 HOH A 34 355 34 HOH WAT . I 4 HOH A 35 356 35 HOH WAT . I 4 HOH A 36 357 36 HOH WAT . I 4 HOH A 37 358 37 HOH WAT . I 4 HOH A 38 359 38 HOH WAT . I 4 HOH A 39 360 39 HOH WAT . I 4 HOH A 40 361 40 HOH WAT . I 4 HOH A 41 362 41 HOH WAT . I 4 HOH A 42 363 42 HOH WAT . I 4 HOH A 43 364 43 HOH WAT . I 4 HOH A 44 365 44 HOH WAT . I 4 HOH A 45 366 45 HOH WAT . I 4 HOH A 46 367 46 HOH WAT . I 4 HOH A 47 368 47 HOH WAT . I 4 HOH A 48 369 48 HOH WAT . I 4 HOH A 49 370 49 HOH WAT . I 4 HOH A 50 371 50 HOH WAT . I 4 HOH A 51 372 51 HOH WAT . I 4 HOH A 52 373 52 HOH WAT . I 4 HOH A 53 374 53 HOH WAT . I 4 HOH A 54 375 54 HOH WAT . I 4 HOH A 55 376 55 HOH WAT . I 4 HOH A 56 377 56 HOH WAT . I 4 HOH A 57 378 57 HOH WAT . I 4 HOH A 58 379 58 HOH WAT . I 4 HOH A 59 380 59 HOH WAT . I 4 HOH A 60 381 60 HOH WAT . I 4 HOH A 61 382 61 HOH WAT . I 4 HOH A 62 383 62 HOH WAT . I 4 HOH A 63 384 63 HOH WAT . I 4 HOH A 64 385 64 HOH WAT . I 4 HOH A 65 386 65 HOH WAT . I 4 HOH A 66 387 66 HOH WAT . I 4 HOH A 67 388 67 HOH WAT . I 4 HOH A 68 389 68 HOH WAT . I 4 HOH A 69 390 69 HOH WAT . I 4 HOH A 70 391 70 HOH WAT . I 4 HOH A 71 392 71 HOH WAT . I 4 HOH A 72 393 72 HOH WAT . I 4 HOH A 73 394 73 HOH WAT . I 4 HOH A 74 395 74 HOH WAT . I 4 HOH A 75 396 75 HOH WAT . I 4 HOH A 76 397 76 HOH WAT . I 4 HOH A 77 398 77 HOH WAT . I 4 HOH A 78 399 78 HOH WAT . I 4 HOH A 79 400 79 HOH WAT . I 4 HOH A 80 408 80 HOH WAT . I 4 HOH A 81 409 81 HOH WAT . I 4 HOH A 82 410 82 HOH WAT . I 4 HOH A 83 411 83 HOH WAT . I 4 HOH A 84 412 84 HOH WAT . I 4 HOH A 85 413 85 HOH WAT . I 4 HOH A 86 414 86 HOH WAT . I 4 HOH A 87 415 87 HOH WAT . I 4 HOH A 88 416 88 HOH WAT . I 4 HOH A 89 417 89 HOH WAT . I 4 HOH A 90 418 90 HOH WAT . I 4 HOH A 91 419 91 HOH WAT . I 4 HOH A 92 420 92 HOH WAT . I 4 HOH A 93 421 93 HOH WAT . I 4 HOH A 94 422 94 HOH WAT . I 4 HOH A 95 423 95 HOH WAT . I 4 HOH A 96 424 96 HOH WAT . I 4 HOH A 97 425 97 HOH WAT . I 4 HOH A 98 426 98 HOH WAT . I 4 HOH A 99 427 99 HOH WAT . I 4 HOH A 100 428 100 HOH WAT . I 4 HOH A 101 429 101 HOH WAT . I 4 HOH A 102 430 102 HOH WAT . I 4 HOH A 103 431 103 HOH WAT . I 4 HOH A 104 432 104 HOH WAT . I 4 HOH A 105 433 105 HOH WAT . I 4 HOH A 106 434 106 HOH WAT . I 4 HOH A 107 435 107 HOH WAT . I 4 HOH A 108 436 108 HOH WAT . I 4 HOH A 109 437 109 HOH WAT . I 4 HOH A 110 438 110 HOH WAT . I 4 HOH A 111 439 111 HOH WAT . I 4 HOH A 112 440 112 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 B83 . . . B 2 -139.834 138.918 93.636 1 33.76 ? C1 B83 401 A 1 HETATM 2 C C2 B83 . . . B 2 -139.236 138.525 92.367 1 33.37 ? C2 B83 401 A 1 HETATM 3 C C3 B83 . . . B 2 -139.047 139.535 91.358 1 32.33 ? C3 B83 401 A 1 HETATM 4 C C4 B83 . . . B 2 -139.435 140.881 91.577 1 31.51 ? C4 B83 401 A 1 HETATM 5 C C5 B83 . . . B 2 -140.019 141.259 92.807 1 32.66 ? C5 B83 401 A 1 HETATM 6 C C6 B83 . . . B 2 -140.215 140.293 93.829 1 33.01 ? C6 B83 401 A 1 HETATM 7 C C7 B83 . . . B 2 -140.109 138.005 94.817 1 34.54 ? C7 B83 401 A 1 HETATM 8 O O8 B83 . . . B 2 -139.758 136.71 94.642 1 34.22 ? O8 B83 401 A 1 HETATM 9 O O9 B83 . . . B 2 -140.603 138.357 95.871 1 38.72 ? O9 B83 401 A 1 HETATM 10 N N10 B83 . . . B 2 -138.872 137.164 92.157 1 33.75 ? N10 B83 401 A 1 HETATM 11 C C11 B83 . . . B 2 -138.279 136.519 91.089 1 35.67 ? C11 B83 401 A 1 HETATM 12 O O12 B83 . . . B 2 -137.885 137.03 90.032 1 36.81 ? O12 B83 401 A 1 HETATM 13 C C13 B83 . . . B 2 -138.173 135.037 91.259 1 35.38 ? C13 B83 401 A 1 HETATM 14 C C14 B83 . . . B 2 -137.943 134.393 92.508 1 35.55 ? C14 B83 401 A 1 HETATM 15 C C15 B83 . . . B 2 -137.889 132.963 92.574 1 36.03 ? C15 B83 401 A 1 HETATM 16 C C16 B83 . . . B 2 -138.064 132.134 91.394 1 38.01 ? C16 B83 401 A 1 HETATM 17 C C17 B83 . . . B 2 -138.289 132.829 90.141 1 36.43 ? C17 B83 401 A 1 HETATM 18 C C18 B83 . . . B 2 -138.344 134.252 90.09 1 35.96 ? C18 B83 401 A 1 HETATM 19 O O19 B83 . . . B 2 -138.459 132.065 88.976 1 35.46 ? O19 B83 401 A 1 HETATM 20 C C20 B83 . . . B 2 -137.574 132.168 87.881 1 35.57 ? C20 B83 401 A 1 HETATM 21 C C21 B83 . . . B 2 -136.258 132.762 87.919 1 35.46 ? C21 B83 401 A 1 HETATM 22 C C22 B83 . . . B 2 -135.461 132.806 86.743 1 36.24 ? C22 B83 401 A 1 HETATM 23 C C23 B83 . . . B 2 -135.957 132.262 85.527 1 36.19 ? C23 B83 401 A 1 HETATM 24 C C24 B83 . . . B 2 -137.251 131.673 85.483 1 36.57 ? C24 B83 401 A 1 HETATM 25 C C25 B83 . . . B 2 -138.056 131.627 86.656 1 34.63 ? C25 B83 401 A 1 HETATM 26 N N26 B83 . . . B 2 -138.026 130.712 91.434 1 39.72 ? N26 B83 401 A 1 HETATM 27 C C27 B83 . . . B 2 -136.766 130.095 90.916 1 41.84 ? C27 B83 401 A 1 HETATM 28 C C28 B83 . . . B 2 -136.991 128.58 90.679 1 42.38 ? C28 B83 401 A 1 HETATM 29 C C29 B83 . . . B 2 -137.404 127.907 92.011 1 40.65 ? C29 B83 401 A 1 HETATM 30 C C30 B83 . . . B 2 -138.68 128.57 92.568 1 41.6 ? C30 B83 401 A 1 HETATM 31 C C31 B83 . . . B 2 -138.435 130.092 92.757 1 40.31 ? C31 B83 401 A 1 HETATM 32 C C32 B83 . . . B 2 -139.086 127.923 93.894 1 40.61 ? C32 B83 401 A 1 HETATM 33 C C33 B83 . . . B 2 -135.72 127.936 90.138 1 44.65 ? C33 B83 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 33 #