data_3ILP # _model_server_result.job_id U3e96xj4pzs-n621fUgWDw _model_server_result.datetime_utc '2024-11-26 23:09:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ilp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":3092}' # _entry.id 3ILP # _exptl.entry_id 3ILP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ILP _cell.length_a 42.148 _cell.length_b 110.393 _cell.length_c 107.498 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ILP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG E 511 NAG 3 n C NAG 2 C 2 NAG E 512 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 104 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? disulf ? disulf2 A SG CYS 208 A CYS 208 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 165 A ASN 165 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 218 n n S C1 DMS sing 219 n n S C2 DMS sing 220 n n C1 H11 DMS sing 221 n n C1 H12 DMS sing 222 n n C1 H13 DMS sing 223 n n C2 H21 DMS sing 224 n n C2 H22 DMS sing 225 n n C2 H23 DMS sing 226 n n # _atom_sites.entry_id 3ILP _atom_sites.fract_transf_matrix[1][1] 0.023726 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009059 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009302 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 501 501 NAG NAG . E 5 1L2 A 1 286 1 1L2 1L2 . F 6 DMS A 1 3092 3092 DMS DMS . G 7 HOH A 1 287 1 HOH HOH . G 7 HOH A 2 288 2 HOH HOH . G 7 HOH A 3 289 3 HOH HOH . G 7 HOH A 4 290 6 HOH HOH . G 7 HOH A 5 291 8 HOH HOH . G 7 HOH A 6 292 9 HOH HOH . G 7 HOH A 7 293 12 HOH HOH . G 7 HOH A 8 294 14 HOH HOH . G 7 HOH A 9 295 16 HOH HOH . G 7 HOH A 10 296 19 HOH HOH . G 7 HOH A 11 297 20 HOH HOH . G 7 HOH A 12 298 21 HOH HOH . G 7 HOH A 13 299 26 HOH HOH . G 7 HOH A 14 300 30 HOH HOH . G 7 HOH A 15 301 33 HOH HOH . G 7 HOH A 16 302 34 HOH HOH . G 7 HOH A 17 303 36 HOH HOH . G 7 HOH A 18 304 37 HOH HOH . G 7 HOH A 19 305 38 HOH HOH . G 7 HOH A 20 306 39 HOH HOH . G 7 HOH A 21 307 40 HOH HOH . G 7 HOH A 22 308 42 HOH HOH . G 7 HOH A 23 309 43 HOH HOH . G 7 HOH A 24 310 45 HOH HOH . G 7 HOH A 25 311 46 HOH HOH . G 7 HOH A 26 312 47 HOH HOH . G 7 HOH A 27 313 48 HOH HOH . G 7 HOH A 28 314 50 HOH HOH . G 7 HOH A 29 315 51 HOH HOH . G 7 HOH A 30 316 52 HOH HOH . G 7 HOH A 31 317 53 HOH HOH . G 7 HOH A 32 318 55 HOH HOH . G 7 HOH A 33 319 57 HOH HOH . G 7 HOH A 34 320 58 HOH HOH . G 7 HOH A 35 321 59 HOH HOH . G 7 HOH A 36 322 61 HOH HOH . G 7 HOH A 37 323 63 HOH HOH . G 7 HOH A 38 324 64 HOH HOH . G 7 HOH A 39 325 66 HOH HOH . G 7 HOH A 40 326 67 HOH HOH . G 7 HOH A 41 327 68 HOH HOH . G 7 HOH A 42 328 71 HOH HOH . G 7 HOH A 43 329 72 HOH HOH . G 7 HOH A 44 330 74 HOH HOH . G 7 HOH A 45 331 75 HOH HOH . G 7 HOH A 46 332 76 HOH HOH . G 7 HOH A 47 333 77 HOH HOH . G 7 HOH A 48 334 78 HOH HOH . G 7 HOH A 49 335 79 HOH HOH . G 7 HOH A 50 336 81 HOH HOH . G 7 HOH A 51 337 82 HOH HOH . G 7 HOH A 52 338 83 HOH HOH . G 7 HOH A 53 339 87 HOH HOH . G 7 HOH A 54 340 88 HOH HOH . G 7 HOH A 55 341 89 HOH HOH . G 7 HOH A 56 342 90 HOH HOH . G 7 HOH A 57 343 91 HOH HOH . G 7 HOH A 58 344 92 HOH HOH . G 7 HOH A 59 345 93 HOH HOH . G 7 HOH A 60 346 94 HOH HOH . G 7 HOH A 61 347 95 HOH HOH . G 7 HOH A 62 348 96 HOH HOH . G 7 HOH A 63 349 97 HOH HOH . G 7 HOH A 64 350 100 HOH HOH . G 7 HOH A 65 351 101 HOH HOH . G 7 HOH A 66 352 103 HOH HOH . G 7 HOH A 67 353 105 HOH HOH . G 7 HOH A 68 354 106 HOH HOH . G 7 HOH A 69 355 107 HOH HOH . G 7 HOH A 70 356 110 HOH HOH . G 7 HOH A 71 357 111 HOH HOH . G 7 HOH A 72 358 112 HOH HOH . G 7 HOH A 73 359 116 HOH HOH . G 7 HOH A 74 360 117 HOH HOH . G 7 HOH A 75 361 118 HOH HOH . G 7 HOH A 76 362 119 HOH HOH . G 7 HOH A 77 363 120 HOH HOH . G 7 HOH A 78 364 123 HOH HOH . G 7 HOH A 79 365 126 HOH HOH . G 7 HOH A 80 366 128 HOH HOH . G 7 HOH A 81 367 129 HOH HOH . G 7 HOH A 82 368 130 HOH HOH . G 7 HOH A 83 369 131 HOH HOH . G 7 HOH A 84 370 132 HOH HOH . G 7 HOH A 85 371 133 HOH HOH . G 7 HOH A 86 372 134 HOH HOH . G 7 HOH A 87 373 135 HOH HOH . G 7 HOH A 88 374 136 HOH HOH . G 7 HOH A 89 375 138 HOH HOH . G 7 HOH A 90 376 139 HOH HOH . G 7 HOH A 91 377 140 HOH HOH . G 7 HOH A 92 378 141 HOH HOH . G 7 HOH A 93 379 142 HOH HOH . G 7 HOH A 94 380 145 HOH HOH . G 7 HOH A 95 381 146 HOH HOH . G 7 HOH A 96 382 148 HOH HOH . G 7 HOH A 97 383 149 HOH HOH . G 7 HOH A 98 384 150 HOH HOH . G 7 HOH A 99 385 151 HOH HOH . G 7 HOH A 100 386 152 HOH HOH . G 7 HOH A 101 387 153 HOH HOH . G 7 HOH A 102 388 156 HOH HOH . G 7 HOH A 103 389 157 HOH HOH . G 7 HOH A 104 390 159 HOH HOH . G 7 HOH A 105 391 160 HOH HOH . G 7 HOH A 106 392 161 HOH HOH . G 7 HOH A 107 393 162 HOH HOH . G 7 HOH A 108 394 163 HOH HOH . G 7 HOH A 109 395 167 HOH HOH . G 7 HOH A 110 396 169 HOH HOH . G 7 HOH A 111 397 170 HOH HOH . G 7 HOH A 112 398 172 HOH HOH . G 7 HOH A 113 399 173 HOH HOH . G 7 HOH A 114 400 175 HOH HOH . G 7 HOH A 115 401 176 HOH HOH . G 7 HOH A 116 402 178 HOH HOH . G 7 HOH A 117 403 181 HOH HOH . G 7 HOH A 118 404 182 HOH HOH . G 7 HOH A 119 405 185 HOH HOH . G 7 HOH A 120 406 186 HOH HOH . G 7 HOH A 121 407 187 HOH HOH . G 7 HOH A 122 408 189 HOH HOH . G 7 HOH A 123 409 191 HOH HOH . G 7 HOH A 124 410 192 HOH HOH . G 7 HOH A 125 411 193 HOH HOH . G 7 HOH A 126 412 194 HOH HOH . G 7 HOH A 127 413 196 HOH HOH . G 7 HOH A 128 414 201 HOH HOH . G 7 HOH A 129 415 202 HOH HOH . G 7 HOH A 130 416 207 HOH HOH . G 7 HOH A 131 417 210 HOH HOH . G 7 HOH A 132 418 211 HOH HOH . G 7 HOH A 133 419 212 HOH HOH . G 7 HOH A 134 420 215 HOH HOH . G 7 HOH A 135 421 216 HOH HOH . G 7 HOH A 136 422 217 HOH HOH . G 7 HOH A 137 423 219 HOH HOH . G 7 HOH A 138 424 220 HOH HOH . G 7 HOH A 139 425 221 HOH HOH . G 7 HOH A 140 426 222 HOH HOH . G 7 HOH A 141 427 227 HOH HOH . G 7 HOH A 142 428 229 HOH HOH . G 7 HOH A 143 429 230 HOH HOH . G 7 HOH A 144 430 231 HOH HOH . G 7 HOH A 145 431 232 HOH HOH . G 7 HOH A 146 432 234 HOH HOH . G 7 HOH A 147 433 235 HOH HOH . G 7 HOH A 148 434 237 HOH HOH . G 7 HOH A 149 435 238 HOH HOH . G 7 HOH A 150 436 240 HOH HOH . G 7 HOH A 151 437 241 HOH HOH . G 7 HOH A 152 438 242 HOH HOH . G 7 HOH A 153 439 244 HOH HOH . G 7 HOH A 154 440 41 HOH HOH . H 7 HOH B 1 100 4 HOH HOH . H 7 HOH B 2 101 5 HOH HOH . H 7 HOH B 3 102 102 HOH HOH . H 7 HOH B 4 103 7 HOH HOH . H 7 HOH B 5 104 104 HOH HOH . H 7 HOH B 6 105 10 HOH HOH . H 7 HOH B 7 106 11 HOH HOH . H 7 HOH B 8 107 13 HOH HOH . H 7 HOH B 9 108 108 HOH HOH . H 7 HOH B 10 109 109 HOH HOH . H 7 HOH B 11 110 15 HOH HOH . H 7 HOH B 12 111 17 HOH HOH . H 7 HOH B 13 112 18 HOH HOH . H 7 HOH B 14 113 113 HOH HOH . H 7 HOH B 15 114 114 HOH HOH . H 7 HOH B 16 115 115 HOH HOH . H 7 HOH B 17 116 22 HOH HOH . H 7 HOH B 18 117 23 HOH HOH . H 7 HOH B 19 118 24 HOH HOH . H 7 HOH B 20 119 25 HOH HOH . H 7 HOH B 21 120 27 HOH HOH . H 7 HOH B 22 121 121 HOH HOH . H 7 HOH B 23 122 28 HOH HOH . H 7 HOH B 24 123 29 HOH HOH . H 7 HOH B 25 124 124 HOH HOH . H 7 HOH B 26 125 125 HOH HOH . H 7 HOH B 27 126 31 HOH HOH . H 7 HOH B 28 127 127 HOH HOH . H 7 HOH B 29 128 32 HOH HOH . H 7 HOH B 30 129 35 HOH HOH . H 7 HOH B 31 130 44 HOH HOH . H 7 HOH B 32 131 49 HOH HOH . H 7 HOH B 33 132 54 HOH HOH . H 7 HOH B 34 133 56 HOH HOH . H 7 HOH B 35 134 60 HOH HOH . H 7 HOH B 36 135 62 HOH HOH . H 7 HOH B 37 136 65 HOH HOH . H 7 HOH B 38 137 137 HOH HOH . H 7 HOH B 39 138 69 HOH HOH . H 7 HOH B 40 139 70 HOH HOH . H 7 HOH B 41 140 80 HOH HOH . H 7 HOH B 42 141 84 HOH HOH . H 7 HOH B 43 142 85 HOH HOH . H 7 HOH B 44 143 143 HOH HOH . H 7 HOH B 45 144 144 HOH HOH . H 7 HOH B 46 145 86 HOH HOH . H 7 HOH B 47 146 98 HOH HOH . H 7 HOH B 48 154 154 HOH HOH . H 7 HOH B 49 155 155 HOH HOH . H 7 HOH B 50 164 164 HOH HOH . H 7 HOH B 51 166 166 HOH HOH . H 7 HOH B 52 168 168 HOH HOH . H 7 HOH B 53 174 174 HOH HOH . H 7 HOH B 54 177 177 HOH HOH . H 7 HOH B 55 179 179 HOH HOH . H 7 HOH B 56 180 180 HOH HOH . H 7 HOH B 57 183 183 HOH HOH . H 7 HOH B 58 184 184 HOH HOH . H 7 HOH B 59 190 190 HOH HOH . H 7 HOH B 60 195 195 HOH HOH . H 7 HOH B 61 197 197 HOH HOH . H 7 HOH B 62 198 198 HOH HOH . H 7 HOH B 63 205 205 HOH HOH . H 7 HOH B 64 208 208 HOH HOH . H 7 HOH B 65 214 214 HOH HOH . H 7 HOH B 66 218 218 HOH HOH . H 7 HOH B 67 223 223 HOH HOH . H 7 HOH B 68 224 224 HOH HOH . H 7 HOH B 69 226 226 HOH HOH . H 7 HOH B 70 228 228 HOH HOH . H 7 HOH B 71 233 233 HOH HOH . H 7 HOH B 72 236 236 HOH HOH . H 7 HOH B 73 239 239 HOH HOH . H 7 HOH B 74 245 245 HOH HOH . H 7 HOH B 75 246 246 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . F 6 -28.594 11.612 -23.012 1 64.28 ? S DMS 3092 A 1 HETATM 2 O O DMS . . . F 6 -29.623 13.011 -22.544 1 63.19 ? O DMS 3092 A 1 HETATM 3 C C1 DMS . . . F 6 -26.939 11.808 -22.293 1 63.07 ? C1 DMS 3092 A 1 HETATM 4 C C2 DMS . . . F 6 -29.193 10.106 -22.186 1 63.02 ? C2 DMS 3092 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #