data_3IMJ # _model_server_result.job_id GFS2E9vls51GApdSasaj4A _model_server_result.datetime_utc '2025-02-05 10:58:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3imj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3IMJ # _exptl.entry_id 3IMJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 541.491 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ;(1R,2S,3R,1S',1S")Phosphoric acid mono(4-{2-[1-(1,2-dicarbamoylethylcarbamoyl)-3-carbamoylpropylcarbamoyl]-3-methylcarbamoylcyclopropyl}phenyl) ester ; _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.47 _cell.angle_gamma 90 _cell.entry_id 3IMJ _cell.length_a 31.595 _cell.length_b 85.511 _cell.length_c 41.641 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IMJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 A,B,C,D,E,F 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C22 H32 N5 O9 P' _chem_comp.formula_weight 541.491 _chem_comp.id AYI _chem_comp.mon_nstd_flag . _chem_comp.name ;(1R,2S,3R,1S',1S")Phosphoric acid mono(4-{2-[1-(1,2-dicarbamoylethylcarbamoyl)-3-carbamoylpropylcarbamoyl]-3-methylcarbamoylcyclopropyl}phenyl) ester ; _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C NAE AYI sing 70 n n C CA AYI sing 71 n n N CBA AYI sing 72 n n N HN AYI sing 73 n n O C AYI doub 74 n n CA N AYI sing 75 n n CA HA AYI sing 76 n n CB CA AYI sing 77 n n CB HB AYI sing 78 n n CB HBA AYI sing 79 n n CG CB AYI sing 80 n n CG OD1 AYI doub 81 n n CAA HAA AYI sing 82 n n CAA HAAA AYI sing 83 n n CAA HAAB AYI sing 84 n n CAB HAB AYI sing 85 n n CAB HABA AYI sing 86 n n CAC HAC AYI sing 87 n n CAC HACA AYI sing 88 n n CAC HACB AYI sing 89 n n NAE HNAE AYI sing 90 n n NAE HNAA AYI sing 91 n n OAI CBA AYI doub 92 n n OAJ CBB AYI doub 93 n n OAK PBK AYI doub 94 n n OAL PBK AYI sing 95 n n OAL HOAL AYI sing 96 n n OAM HOAM AYI sing 97 n n CAN CAP AYI sing 98 n y CAN HAN AYI sing 99 n n CAO CAQ AYI doub 100 n y CAO CBC AYI sing 101 n y CAO HAO AYI sing 102 n n CAP HAP AYI sing 103 n n CAQ CBD AYI sing 104 n y CAQ HAQ AYI sing 105 n n CAR CAA AYI sing 106 n n CAR HAR AYI sing 107 n n CAR HARA AYI sing 108 n n NAT CAB AYI sing 109 n n NAT CAZ AYI sing 110 n n NAV CBG AYI sing 111 n n NAV HNAV AYI sing 112 n n OAW CBC AYI sing 113 n n OAW PBK AYI sing 114 n n CAZ OAH AYI doub 115 n n CBA CBG AYI sing 116 n n CBB NAV AYI sing 117 n n CBC CAN AYI doub 118 n y CBD CAP AYI doub 119 n y CBD CBJ AYI sing 120 n n CBE CAC AYI sing 121 n n CBE CAR AYI sing 122 n n CBE HBE AYI sing 123 n n CBG CBE AYI sing 124 n n CBG HBG AYI sing 125 n n CBH CAZ AYI sing 126 n n CBH CBI AYI sing 127 n n CBH HBH AYI sing 128 n n CBI CBB AYI sing 129 n n CBI HBI AYI sing 130 n n CBJ CBH AYI sing 131 n n CBJ CBI AYI sing 132 n n CBJ HBJ AYI sing 133 n n PBK OAM AYI sing 134 n n ND2 CG AYI sing 135 n n ND2 HND2 AYI sing 136 n n ND2 HNDA AYI sing 137 n n CAB H31 AYI sing 138 n n NAT H32 AYI sing 139 n n # _atom_sites.entry_id 3IMJ _atom_sites.fract_transf_matrix[1][1] 0.031651 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004713 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011694 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02428 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AYI A 1 1 1 AYI AYI . D 2 AYI B 1 1 1 AYI AYI . E 3 HOH A 1 2 2 HOH HOH . E 3 HOH A 2 4 4 HOH HOH . E 3 HOH A 3 5 5 HOH HOH . E 3 HOH A 4 6 6 HOH HOH . E 3 HOH A 5 7 7 HOH HOH . E 3 HOH A 6 9 9 HOH HOH . E 3 HOH A 7 11 11 HOH HOH . E 3 HOH A 8 13 13 HOH HOH . E 3 HOH A 9 16 16 HOH HOH . E 3 HOH A 10 17 17 HOH HOH . E 3 HOH A 11 18 18 HOH HOH . E 3 HOH A 12 19 19 HOH HOH . E 3 HOH A 13 20 20 HOH HOH . E 3 HOH A 14 22 22 HOH HOH . E 3 HOH A 15 24 24 HOH HOH . E 3 HOH A 16 26 26 HOH HOH . E 3 HOH A 17 27 27 HOH HOH . E 3 HOH A 18 30 30 HOH HOH . E 3 HOH A 19 35 35 HOH HOH . E 3 HOH A 20 37 37 HOH HOH . E 3 HOH A 21 38 38 HOH HOH . E 3 HOH A 22 40 40 HOH HOH . E 3 HOH A 23 41 41 HOH HOH . E 3 HOH A 24 44 44 HOH HOH . E 3 HOH A 25 48 48 HOH HOH . E 3 HOH A 26 49 49 HOH HOH . E 3 HOH A 27 50 50 HOH HOH . E 3 HOH A 28 51 51 HOH HOH . E 3 HOH A 29 170 170 HOH HOH . E 3 HOH A 30 171 53 HOH HOH . E 3 HOH A 31 172 89 HOH HOH . E 3 HOH A 32 173 54 HOH HOH . E 3 HOH A 33 174 57 HOH HOH . E 3 HOH A 34 175 175 HOH HOH . E 3 HOH A 35 176 176 HOH HOH . E 3 HOH A 36 177 177 HOH HOH . E 3 HOH A 37 178 178 HOH HOH . E 3 HOH A 38 179 179 HOH HOH . E 3 HOH A 39 180 58 HOH HOH . E 3 HOH A 40 181 181 HOH HOH . E 3 HOH A 41 182 182 HOH HOH . E 3 HOH A 42 183 59 HOH HOH . E 3 HOH A 43 184 184 HOH HOH . E 3 HOH A 44 185 61 HOH HOH . E 3 HOH A 45 186 62 HOH HOH . E 3 HOH A 46 187 63 HOH HOH . E 3 HOH A 47 188 64 HOH HOH . E 3 HOH A 48 189 66 HOH HOH . E 3 HOH A 49 190 67 HOH HOH . E 3 HOH A 50 191 68 HOH HOH . E 3 HOH A 51 192 69 HOH HOH . E 3 HOH A 52 193 72 HOH HOH . E 3 HOH A 53 194 73 HOH HOH . E 3 HOH A 54 195 74 HOH HOH . E 3 HOH A 55 196 75 HOH HOH . E 3 HOH A 56 197 80 HOH HOH . E 3 HOH A 57 198 81 HOH HOH . E 3 HOH A 58 199 82 HOH HOH . E 3 HOH A 59 200 85 HOH HOH . E 3 HOH A 60 201 86 HOH HOH . E 3 HOH A 61 202 87 HOH HOH . E 3 HOH A 62 203 88 HOH HOH . E 3 HOH A 63 204 93 HOH HOH . E 3 HOH A 64 205 94 HOH HOH . E 3 HOH A 65 206 96 HOH HOH . E 3 HOH A 66 207 97 HOH HOH . E 3 HOH A 67 208 98 HOH HOH . E 3 HOH A 68 209 114 HOH HOH . E 3 HOH A 69 211 104 HOH HOH . E 3 HOH A 70 212 109 HOH HOH . E 3 HOH A 71 213 112 HOH HOH . E 3 HOH A 72 214 113 HOH HOH . E 3 HOH A 73 215 116 HOH HOH . E 3 HOH A 74 216 118 HOH HOH . E 3 HOH A 75 217 123 HOH HOH . E 3 HOH A 76 218 130 HOH HOH . E 3 HOH A 77 219 131 HOH HOH . E 3 HOH A 78 220 132 HOH HOH . E 3 HOH A 79 221 133 HOH HOH . E 3 HOH A 80 223 140 HOH HOH . E 3 HOH A 81 224 142 HOH HOH . E 3 HOH A 82 225 143 HOH HOH . E 3 HOH A 83 226 150 HOH HOH . E 3 HOH A 84 227 151 HOH HOH . E 3 HOH A 85 228 152 HOH HOH . E 3 HOH A 86 229 153 HOH HOH . E 3 HOH A 87 230 159 HOH HOH . E 3 HOH A 88 231 160 HOH HOH . E 3 HOH A 89 232 161 HOH HOH . E 3 HOH A 90 233 162 HOH HOH . E 3 HOH A 91 234 163 HOH HOH . E 3 HOH A 92 235 164 HOH HOH . E 3 HOH A 93 236 165 HOH HOH . E 3 HOH A 94 237 166 HOH HOH . F 3 HOH B 1 3 3 HOH HOH . F 3 HOH B 2 8 8 HOH HOH . F 3 HOH B 3 10 10 HOH HOH . F 3 HOH B 4 12 12 HOH HOH . F 3 HOH B 5 14 14 HOH HOH . F 3 HOH B 6 15 15 HOH HOH . F 3 HOH B 7 21 21 HOH HOH . F 3 HOH B 8 23 23 HOH HOH . F 3 HOH B 9 25 25 HOH HOH . F 3 HOH B 10 28 28 HOH HOH . F 3 HOH B 11 29 29 HOH HOH . F 3 HOH B 12 31 31 HOH HOH . F 3 HOH B 13 32 32 HOH HOH . F 3 HOH B 14 33 33 HOH HOH . F 3 HOH B 15 34 34 HOH HOH . F 3 HOH B 16 36 36 HOH HOH . F 3 HOH B 17 39 39 HOH HOH . F 3 HOH B 18 42 42 HOH HOH . F 3 HOH B 19 43 43 HOH HOH . F 3 HOH B 20 45 45 HOH HOH . F 3 HOH B 21 46 46 HOH HOH . F 3 HOH B 22 47 47 HOH HOH . F 3 HOH B 23 52 52 HOH HOH . F 3 HOH B 24 170 1 HOH HOH . F 3 HOH B 25 171 171 HOH HOH . F 3 HOH B 26 172 172 HOH HOH . F 3 HOH B 27 173 173 HOH HOH . F 3 HOH B 28 174 174 HOH HOH . F 3 HOH B 29 175 56 HOH HOH . F 3 HOH B 30 176 60 HOH HOH . F 3 HOH B 31 177 65 HOH HOH . F 3 HOH B 32 178 70 HOH HOH . F 3 HOH B 33 179 71 HOH HOH . F 3 HOH B 34 180 180 HOH HOH . F 3 HOH B 35 181 76 HOH HOH . F 3 HOH B 36 182 77 HOH HOH . F 3 HOH B 37 183 183 HOH HOH . F 3 HOH B 38 184 78 HOH HOH . F 3 HOH B 39 185 79 HOH HOH . F 3 HOH B 40 186 83 HOH HOH . F 3 HOH B 41 187 84 HOH HOH . F 3 HOH B 42 188 55 HOH HOH . F 3 HOH B 43 189 90 HOH HOH . F 3 HOH B 44 190 91 HOH HOH . F 3 HOH B 45 191 92 HOH HOH . F 3 HOH B 46 192 95 HOH HOH . F 3 HOH B 47 193 99 HOH HOH . F 3 HOH B 48 194 100 HOH HOH . F 3 HOH B 49 195 102 HOH HOH . F 3 HOH B 50 196 105 HOH HOH . F 3 HOH B 51 197 106 HOH HOH . F 3 HOH B 52 198 107 HOH HOH . F 3 HOH B 53 199 108 HOH HOH . F 3 HOH B 54 200 110 HOH HOH . F 3 HOH B 55 201 111 HOH HOH . F 3 HOH B 56 202 124 HOH HOH . F 3 HOH B 57 203 115 HOH HOH . F 3 HOH B 58 204 117 HOH HOH . F 3 HOH B 59 205 119 HOH HOH . F 3 HOH B 60 206 120 HOH HOH . F 3 HOH B 61 207 121 HOH HOH . F 3 HOH B 62 208 122 HOH HOH . F 3 HOH B 63 209 101 HOH HOH . F 3 HOH B 64 210 103 HOH HOH . F 3 HOH B 65 211 126 HOH HOH . F 3 HOH B 66 212 127 HOH HOH . F 3 HOH B 67 213 128 HOH HOH . F 3 HOH B 68 214 129 HOH HOH . F 3 HOH B 69 215 135 HOH HOH . F 3 HOH B 70 216 136 HOH HOH . F 3 HOH B 71 217 137 HOH HOH . F 3 HOH B 72 218 138 HOH HOH . F 3 HOH B 73 219 139 HOH HOH . F 3 HOH B 74 220 141 HOH HOH . F 3 HOH B 75 221 144 HOH HOH . F 3 HOH B 76 222 134 HOH HOH . F 3 HOH B 77 223 146 HOH HOH . F 3 HOH B 78 224 147 HOH HOH . F 3 HOH B 79 225 148 HOH HOH . F 3 HOH B 80 226 149 HOH HOH . F 3 HOH B 81 227 156 HOH HOH . F 3 HOH B 82 228 157 HOH HOH . F 3 HOH B 83 229 158 HOH HOH . F 3 HOH B 84 230 167 HOH HOH . F 3 HOH B 85 231 168 HOH HOH . F 3 HOH B 86 232 125 HOH HOH . F 3 HOH B 87 233 145 HOH HOH . F 3 HOH B 88 238 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAB AYI . . . C 2 5.955 -19.41 13.421 1 32.64 ? CAB AYI 1 A 1 HETATM 2 O OAH AYI . . . C 2 3.642 -18.092 13.918 1 26.67 ? OAH AYI 1 A 1 HETATM 3 O OAJ AYI . . . C 2 -0.35 -20.706 12.625 1 24.62 ? OAJ AYI 1 A 1 HETATM 4 O OAK AYI . . . C 2 6.6 -14.261 10.518 1 26.03 ? OAK AYI 1 A 1 HETATM 5 O OAL AYI . . . C 2 5.77 -11.84 10.648 1 26.28 ? OAL AYI 1 A 1 HETATM 6 O OAM AYI . . . C 2 5.271 -13.466 12.568 1 25.2 ? OAM AYI 1 A 1 HETATM 7 C CAN AYI . . . C 2 2.318 -14.918 11.347 1 24.37 ? CAN AYI 1 A 1 HETATM 8 C CAO AYI . . . C 2 4.164 -16.101 10.364 1 27.23 ? CAO AYI 1 A 1 HETATM 9 C CAP AYI . . . C 2 1.699 -16.129 11.636 1 25.2 ? CAP AYI 1 A 1 HETATM 10 C CAQ AYI . . . C 2 3.544 -17.312 10.653 1 28.17 ? CAQ AYI 1 A 1 HETATM 11 N NAT AYI . . . C 2 4.66 -19.811 12.854 1 31.47 ? NAT AYI 1 A 1 HETATM 12 O OAW AYI . . . C 2 4.071 -13.712 10.29 1 25.65 ? OAW AYI 1 A 1 HETATM 13 C CAZ AYI . . . C 2 3.598 -19.081 13.188 1 28.62 ? CAZ AYI 1 A 1 HETATM 14 C CBB AYI . . . C 2 -0.235 -19.615 13.18 1 24.38 ? CBB AYI 1 A 1 HETATM 15 C CBC AYI . . . C 2 3.551 -14.9 10.705 1 25.82 ? CBC AYI 1 A 1 HETATM 16 C CBD AYI . . . C 2 2.307 -17.33 11.288 1 26.35 ? CBD AYI 1 A 1 HETATM 17 C CBH AYI . . . C 2 2.272 -19.572 12.607 1 26.8 ? CBH AYI 1 A 1 HETATM 18 C CBI AYI . . . C 2 1.032 -18.772 13.005 1 25.64 ? CBI AYI 1 A 1 HETATM 19 C CBJ AYI . . . C 2 1.594 -18.653 11.586 1 26.69 ? CBJ AYI 1 A 1 HETATM 20 P PBK AYI . . . C 2 5.493 -13.391 10.976 1 25.47 ? PBK AYI 1 A 1 HETATM 21 C CAA AYI . . . C 2 -2.119 -19.695 17.244 1 26.11 ? CAA AYI 1 A 1 HETATM 22 O OAI AYI . . . C 2 -3.808 -21.224 12.97 1 20.09 ? OAI AYI 1 A 1 HETATM 23 C CAR AYI . . . C 2 -2.544 -18.466 16.439 1 21.49 ? CAR AYI 1 A 1 HETATM 24 C CAC AYI . . . C 2 -4.602 -19.587 15.525 1 20.39 ? CAC AYI 1 A 1 HETATM 25 N NAV AYI . . . C 2 -1.169 -19.072 13.956 1 22.56 ? NAV AYI 1 A 1 HETATM 26 C CBA AYI . . . C 2 -3.223 -20.142 13.023 1 22.21 ? CBA AYI 1 A 1 HETATM 27 C CBE AYI . . . C 2 -3.297 -18.87 15.169 1 22.75 ? CBE AYI 1 A 1 HETATM 28 C CBG AYI . . . C 2 -2.431 -19.756 14.273 1 20.42 ? CBG AYI 1 A 1 HETATM 29 C C AYI . . . C 2 -3.059 -20.043 9.725 1 22.23 ? C AYI 1 A 1 HETATM 30 N N AYI . . . C 2 -3.255 -19.243 12.043 1 22.2 ? N AYI 1 A 1 HETATM 31 O O AYI . . . C 2 -3.396 -20.048 8.542 1 21.84 ? O AYI 1 A 1 HETATM 32 C CA AYI . . . C 2 -4.003 -19.519 10.808 1 21.59 ? CA AYI 1 A 1 HETATM 33 C CB AYI . . . C 2 -4.723 -18.261 10.316 1 21.51 ? CB AYI 1 A 1 HETATM 34 C CG AYI . . . C 2 -3.746 -17.157 9.909 1 19.8 ? CG AYI 1 A 1 HETATM 35 N NAE AYI . . . C 2 -1.888 -20.486 10.172 1 20.26 ? NAE AYI 1 A 1 HETATM 36 O OD1 AYI . . . C 2 -2.672 -17.013 10.49 1 20.94 ? OD1 AYI 1 A 1 HETATM 37 N ND2 AYI . . . C 2 -4.16 -16.386 8.906 1 19.94 ? ND2 AYI 1 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 37 #