data_3IMY # _model_server_result.job_id 1PwhYiSpig27dBK58xXNRg _model_server_result.datetime_utc '2024-12-02 19:50:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3imy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":462}' # _entry.id 3IMY # _exptl.entry_id 3IMY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 328.402 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{4-[4-hydroxy-3-(1-methylethyl)benzyl]-3,5-dimethylphenoxy}acetic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3IMY _cell.length_a 68.996 _cell.length_b 68.996 _cell.length_c 130.861 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IMY _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 43.620333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 93 A PHE 293 1_555 A N CAS 94 A CAS 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C CAS 94 A CAS 294 1_555 A N GLU 95 A GLU 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C ALA 187 A ALA 387 1_555 A N CAS 188 A CAS 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C CAS 188 A CAS 388 1_555 A N VAL 189 A VAL 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C ALA 233 A ALA 433 1_555 A N CAS 234 A CAS 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.306 ? covale ? covale6 A C CAS 234 A CAS 434 1_555 A N HIS 235 A HIS 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? # _chem_comp.formula 'C20 H24 O4' _chem_comp.formula_weight 328.402 _chem_comp.id B72 _chem_comp.mon_nstd_flag . _chem_comp.name '{4-[4-hydroxy-3-(1-methylethyl)benzyl]-3,5-dimethylphenoxy}acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 O2 B72 doub 70 n n C20 O1 B72 sing 71 n n C19 C20 B72 sing 72 n n C19 H119 B72 sing 73 n n C19 H219 B72 sing 74 n n O3 C19 B72 sing 75 n n C1 O3 B72 sing 76 n n C2 C1 B72 sing 77 n y C2 H2 B72 sing 78 n n C3 C2 B72 doub 79 n y C17 C3 B72 sing 80 n n C17 H117 B72 sing 81 n n C17 H217 B72 sing 82 n n C17 H317 B72 sing 83 n n C4 C5 B72 doub 84 n y C4 C3 B72 sing 85 n y C5 C6 B72 sing 86 n y C6 C1 B72 doub 87 n y C6 H6 B72 sing 88 n n C18 C5 B72 sing 89 n n C18 H118 B72 sing 90 n n C18 H218 B72 sing 91 n n C18 H318 B72 sing 92 n n C7 C4 B72 sing 93 n n C7 H17 B72 sing 94 n n C7 H27 B72 sing 95 n n C8 C9 B72 sing 96 n y C8 C7 B72 sing 97 n n C13 C8 B72 doub 98 n y C13 H13 B72 sing 99 n n C12 C11 B72 doub 100 n y C12 C13 B72 sing 101 n y C14 C12 B72 sing 102 n n C14 C15 B72 sing 103 n n C14 H14 B72 sing 104 n n C16 C14 B72 sing 105 n n C16 H116 B72 sing 106 n n C16 H216 B72 sing 107 n n C16 H316 B72 sing 108 n n C15 H115 B72 sing 109 n n C15 H215 B72 sing 110 n n C15 H315 B72 sing 111 n n C11 C10 B72 sing 112 n y O4 C11 B72 sing 113 n n O4 HO4 B72 sing 114 n n C10 C9 B72 doub 115 n y C10 H10 B72 sing 116 n n C9 H9 B72 sing 117 n n O1 H24 B72 sing 118 n n # _atom_sites.entry_id 3IMY _atom_sites.fract_transf_matrix[1][1] 0.014494 _atom_sites.fract_transf_matrix[1][2] 0.008368 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016736 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007642 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B72 A 1 462 462 B72 B72 . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 4 4 HOH HOH . C 3 HOH A 5 5 5 HOH HOH . C 3 HOH A 6 6 6 HOH HOH . C 3 HOH A 7 7 7 HOH HOH . C 3 HOH A 8 8 8 HOH HOH . C 3 HOH A 9 9 9 HOH HOH . C 3 HOH A 10 10 10 HOH HOH . C 3 HOH A 11 11 11 HOH HOH . C 3 HOH A 12 12 12 HOH HOH . C 3 HOH A 13 13 13 HOH HOH . C 3 HOH A 14 14 14 HOH HOH . C 3 HOH A 15 15 15 HOH HOH . C 3 HOH A 16 16 16 HOH HOH . C 3 HOH A 17 17 17 HOH HOH . C 3 HOH A 18 18 18 HOH HOH . C 3 HOH A 19 19 19 HOH HOH . C 3 HOH A 20 20 20 HOH HOH . C 3 HOH A 21 21 21 HOH HOH . C 3 HOH A 22 22 22 HOH HOH . C 3 HOH A 23 24 24 HOH HOH . C 3 HOH A 24 25 25 HOH HOH . C 3 HOH A 25 26 26 HOH HOH . C 3 HOH A 26 30 30 HOH HOH . C 3 HOH A 27 31 31 HOH HOH . C 3 HOH A 28 32 32 HOH HOH . C 3 HOH A 29 33 33 HOH HOH . C 3 HOH A 30 34 34 HOH HOH . C 3 HOH A 31 35 35 HOH HOH . C 3 HOH A 32 36 36 HOH HOH . C 3 HOH A 33 37 37 HOH HOH . C 3 HOH A 34 38 38 HOH HOH . C 3 HOH A 35 39 39 HOH HOH . C 3 HOH A 36 40 40 HOH HOH . C 3 HOH A 37 41 41 HOH HOH . C 3 HOH A 38 42 42 HOH HOH . C 3 HOH A 39 43 43 HOH HOH . C 3 HOH A 40 44 44 HOH HOH . C 3 HOH A 41 46 46 HOH HOH . C 3 HOH A 42 47 47 HOH HOH . C 3 HOH A 43 48 48 HOH HOH . C 3 HOH A 44 49 49 HOH HOH . C 3 HOH A 45 50 50 HOH HOH . C 3 HOH A 46 51 51 HOH HOH . C 3 HOH A 47 52 52 HOH HOH . C 3 HOH A 48 53 53 HOH HOH . C 3 HOH A 49 54 54 HOH HOH . C 3 HOH A 50 55 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 B72 . . . B 2 10.197 22.754 24.731 1 56.64 ? O1 B72 462 A 1 HETATM 2 C C20 B72 . . . B 2 9.399 22.791 25.611 1 50.71 ? C20 B72 462 A 1 HETATM 3 O O2 B72 . . . B 2 8.777 24.016 25.871 1 46.24 ? O2 B72 462 A 1 HETATM 4 C C19 B72 . . . B 2 8.589 21.532 25.949 1 48.48 ? C19 B72 462 A 1 HETATM 5 O O3 B72 . . . B 2 7.506 21.812 26.801 1 48.46 ? O3 B72 462 A 1 HETATM 6 C C1 B72 . . . B 2 6.694 20.772 27.325 1 48.54 ? C1 B72 462 A 1 HETATM 7 C C2 B72 . . . B 2 6.935 20.344 28.679 1 50.85 ? C2 B72 462 A 1 HETATM 8 C C3 B72 . . . B 2 6.154 19.352 29.236 1 51.6 ? C3 B72 462 A 1 HETATM 9 C C17 B72 . . . B 2 6.395 18.922 30.695 1 42.55 ? C17 B72 462 A 1 HETATM 10 C C4 B72 . . . B 2 5.047 18.743 28.391 1 46.47 ? C4 B72 462 A 1 HETATM 11 C C5 B72 . . . B 2 4.791 19.141 27.087 1 46.13 ? C5 B72 462 A 1 HETATM 12 C C6 B72 . . . B 2 5.633 20.191 26.532 1 45.33 ? C6 B72 462 A 1 HETATM 13 C C18 B72 . . . B 2 3.671 18.503 26.236 1 29.59 ? C18 B72 462 A 1 HETATM 14 C C7 B72 . . . B 2 4.236 17.587 28.999 1 43.89 ? C7 B72 462 A 1 HETATM 15 C C8 B72 . . . B 2 3.109 18.097 29.901 1 41.57 ? C8 B72 462 A 1 HETATM 16 C C13 B72 . . . B 2 2.802 17.365 31.08 1 44.83 ? C13 B72 462 A 1 HETATM 17 C C12 B72 . . . B 2 1.712 17.795 31.903 1 44.45 ? C12 B72 462 A 1 HETATM 18 C C14 B72 . . . B 2 1.373 17.054 33.198 1 39.55 ? C14 B72 462 A 1 HETATM 19 C C16 B72 . . . B 2 1.533 15.543 33.111 1 40.5 ? C16 B72 462 A 1 HETATM 20 C C15 B72 . . . B 2 2.092 17.718 34.372 1 46.47 ? C15 B72 462 A 1 HETATM 21 C C11 B72 . . . B 2 0.945 18.938 31.531 1 40.1 ? C11 B72 462 A 1 HETATM 22 O O4 B72 . . . B 2 -0.137 19.314 32.329 1 43.79 ? O4 B72 462 A 1 HETATM 23 C C10 B72 . . . B 2 1.269 19.69 30.319 1 43.56 ? C10 B72 462 A 1 HETATM 24 C C9 B72 . . . B 2 2.325 19.281 29.508 1 42.69 ? C9 B72 462 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #