data_3IN6 # _model_server_result.job_id KEPoYG6qs8DNRD9P4axFBg _model_server_result.datetime_utc '2024-11-13 12:10:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3in6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":148}' # _entry.id 3IN6 # _exptl.entry_id 3IN6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3IN6 _cell.length_a 103.108 _cell.length_b 103.108 _cell.length_c 59.786 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IN6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 1 A GLY 0 1_555 A N MSE 2 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C MSE 2 A MSE 1 1_555 A N LEU 3 A LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C ILE 13 A ILE 12 1_555 A N MSE 14 A MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C MSE 14 A MSE 13 1_555 A N ASP 15 A ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C GLU 53 A GLU 52 1_555 A N MSE 54 A MSE 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C MSE 54 A MSE 53 1_555 A N ILE 55 A ILE 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale7 A C PHE 82 A PHE 81 1_555 A N MSE 83 A MSE 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale8 A C MSE 83 A MSE 82 1_555 A N VAL 84 A VAL 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 B C GLY 1 B GLY 0 1_555 B N MSE 2 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale10 B C MSE 2 B MSE 1 1_555 B N LEU 3 B LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale11 B C ILE 13 B ILE 12 1_555 B N MSE 14 B MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale12 B C MSE 14 B MSE 13 1_555 B N ASP 15 B ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale13 B C GLU 53 B GLU 52 1_555 B N MSE 54 B MSE 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 B C MSE 54 B MSE 53 1_555 B N ILE 55 B ILE 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale15 B C PHE 82 B PHE 81 1_555 B N MSE 83 B MSE 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale16 B C MSE 83 B MSE 82 1_555 B N VAL 84 B VAL 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # _atom_sites.entry_id 3IN6 _atom_sites.fract_transf_matrix[1][1] 0.009699 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009699 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016726 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 148 2 FMN FMN . D 3 MPD A 1 149 3 MPD MPD . E 2 FMN B 1 148 1 FMN FMN . F 4 HOH A 1 150 4 HOH HOH . F 4 HOH A 2 151 5 HOH HOH . F 4 HOH A 3 152 6 HOH HOH . F 4 HOH A 4 153 7 HOH HOH . F 4 HOH A 5 154 8 HOH HOH . F 4 HOH A 6 155 9 HOH HOH . F 4 HOH A 7 156 14 HOH HOH . F 4 HOH A 8 157 15 HOH HOH . F 4 HOH A 9 158 16 HOH HOH . F 4 HOH A 10 159 17 HOH HOH . F 4 HOH A 11 160 20 HOH HOH . F 4 HOH A 12 161 21 HOH HOH . F 4 HOH A 13 162 22 HOH HOH . F 4 HOH A 14 163 23 HOH HOH . F 4 HOH A 15 164 25 HOH HOH . F 4 HOH A 16 165 26 HOH HOH . F 4 HOH A 17 166 27 HOH HOH . F 4 HOH A 18 167 28 HOH HOH . F 4 HOH A 19 168 30 HOH HOH . F 4 HOH A 20 169 31 HOH HOH . F 4 HOH A 21 170 32 HOH HOH . F 4 HOH A 22 171 33 HOH HOH . F 4 HOH A 23 172 34 HOH HOH . F 4 HOH A 24 173 35 HOH HOH . F 4 HOH A 25 174 36 HOH HOH . F 4 HOH A 26 175 37 HOH HOH . F 4 HOH A 27 176 40 HOH HOH . F 4 HOH A 28 177 41 HOH HOH . F 4 HOH A 29 178 42 HOH HOH . F 4 HOH A 30 179 43 HOH HOH . G 4 HOH B 1 149 10 HOH HOH . G 4 HOH B 2 150 11 HOH HOH . G 4 HOH B 3 151 12 HOH HOH . G 4 HOH B 4 152 13 HOH HOH . G 4 HOH B 5 153 18 HOH HOH . G 4 HOH B 6 154 19 HOH HOH . G 4 HOH B 7 155 24 HOH HOH . G 4 HOH B 8 156 29 HOH HOH . G 4 HOH B 9 157 38 HOH HOH . G 4 HOH B 10 158 39 HOH HOH . G 4 HOH B 11 159 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 2 -25.78 -31.521 13.963 1 49.24 ? N1 FMN 148 A 1 HETATM 2 C C2 FMN . . . C 2 -25.674 -32.663 13.189 1 50.09 ? C2 FMN 148 A 1 HETATM 3 O O2 FMN . . . C 2 -26.181 -32.699 12.063 1 41.44 ? O2 FMN 148 A 1 HETATM 4 N N3 FMN . . . C 2 -24.995 -33.77 13.685 1 52.35 ? N3 FMN 148 A 1 HETATM 5 C C4 FMN . . . C 2 -24.429 -33.748 14.952 1 51.85 ? C4 FMN 148 A 1 HETATM 6 O O4 FMN . . . C 2 -23.834 -34.759 15.364 1 54.12 ? O4 FMN 148 A 1 HETATM 7 C C4A FMN . . . C 2 -24.554 -32.593 15.741 1 52.57 ? C4A FMN 148 A 1 HETATM 8 N N5 FMN . . . C 2 -24.009 -32.535 17.02 1 56.26 ? N5 FMN 148 A 1 HETATM 9 C C5A FMN . . . C 2 -24.119 -31.393 17.805 1 54.61 ? C5A FMN 148 A 1 HETATM 10 C C6 FMN . . . C 2 -23.544 -31.372 19.084 1 55.39 ? C6 FMN 148 A 1 HETATM 11 C C7 FMN . . . C 2 -23.656 -30.232 19.883 1 56.89 ? C7 FMN 148 A 1 HETATM 12 C C7M FMN . . . C 2 -23.036 -30.236 21.248 1 60.38 ? C7M FMN 148 A 1 HETATM 13 C C8 FMN . . . C 2 -24.328 -29.098 19.406 1 57.56 ? C8 FMN 148 A 1 HETATM 14 C C8M FMN . . . C 2 -24.446 -27.853 20.247 1 46.5 ? C8M FMN 148 A 1 HETATM 15 C C9 FMN . . . C 2 -24.893 -29.117 18.123 1 57.87 ? C9 FMN 148 A 1 HETATM 16 C C9A FMN . . . C 2 -24.798 -30.27 17.311 1 56.8 ? C9A FMN 148 A 1 HETATM 17 N N10 FMN . . . C 2 -25.348 -30.319 16.021 1 54.62 ? N10 FMN 148 A 1 HETATM 18 C C10 FMN . . . C 2 -25.234 -31.475 15.243 1 52.25 ? C10 FMN 148 A 1 HETATM 19 C C1' FMN . . . C 2 -26.103 -29.138 15.452 1 55.33 ? C1' FMN 148 A 1 HETATM 20 C C2' FMN . . . C 2 -25.261 -28.288 14.501 1 52.93 ? C2' FMN 148 A 1 HETATM 21 O O2' FMN . . . C 2 -24.064 -27.878 15.126 1 44.21 ? O2' FMN 148 A 1 HETATM 22 C C3' FMN . . . C 2 -26.097 -27.088 14.038 1 54.58 ? C3' FMN 148 A 1 HETATM 23 O O3' FMN . . . C 2 -27.109 -27.558 13.169 1 52.12 ? O3' FMN 148 A 1 HETATM 24 C C4' FMN . . . C 2 -25.279 -25.99 13.349 1 52.3 ? C4' FMN 148 A 1 HETATM 25 O O4' FMN . . . C 2 -26.069 -24.831 13.199 1 54.94 ? O4' FMN 148 A 1 HETATM 26 C C5' FMN . . . C 2 -24.79 -26.406 11.972 1 49.68 ? C5' FMN 148 A 1 HETATM 27 O O5' FMN . . . C 2 -23.988 -25.383 11.435 1 46.14 ? O5' FMN 148 A 1 HETATM 28 P P FMN . . . C 2 -23.856 -25.143 9.84 1 39.4 ? P FMN 148 A 1 HETATM 29 O O1P FMN . . . C 2 -25.131 -24.587 9.267 1 47.01 ? O1P FMN 148 A 1 HETATM 30 O O2P FMN . . . C 2 -23.523 -26.424 9.092 1 35.86 ? O2P FMN 148 A 1 HETATM 31 O O3P FMN . . . C 2 -22.792 -24.102 9.729 1 32.65 ? O3P FMN 148 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 31 #