data_3IN6 # _model_server_result.job_id GRZNDdogloJ_lh1XVltwHg _model_server_result.datetime_utc '2024-11-13 11:56:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3in6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":148}' # _entry.id 3IN6 # _exptl.entry_id 3IN6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3IN6 _cell.length_a 103.108 _cell.length_b 103.108 _cell.length_c 59.786 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IN6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 1 A GLY 0 1_555 A N MSE 2 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C MSE 2 A MSE 1 1_555 A N LEU 3 A LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C ILE 13 A ILE 12 1_555 A N MSE 14 A MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C MSE 14 A MSE 13 1_555 A N ASP 15 A ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C GLU 53 A GLU 52 1_555 A N MSE 54 A MSE 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C MSE 54 A MSE 53 1_555 A N ILE 55 A ILE 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale7 A C PHE 82 A PHE 81 1_555 A N MSE 83 A MSE 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale8 A C MSE 83 A MSE 82 1_555 A N VAL 84 A VAL 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 B C GLY 1 B GLY 0 1_555 B N MSE 2 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale10 B C MSE 2 B MSE 1 1_555 B N LEU 3 B LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale11 B C ILE 13 B ILE 12 1_555 B N MSE 14 B MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale12 B C MSE 14 B MSE 13 1_555 B N ASP 15 B ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale13 B C GLU 53 B GLU 52 1_555 B N MSE 54 B MSE 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 B C MSE 54 B MSE 53 1_555 B N ILE 55 B ILE 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale15 B C PHE 82 B PHE 81 1_555 B N MSE 83 B MSE 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale16 B C MSE 83 B MSE 82 1_555 B N VAL 84 B VAL 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # _atom_sites.entry_id 3IN6 _atom_sites.fract_transf_matrix[1][1] 0.009699 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009699 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016726 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 148 2 FMN FMN . D 3 MPD A 1 149 3 MPD MPD . E 2 FMN B 1 148 1 FMN FMN . F 4 HOH A 1 150 4 HOH HOH . F 4 HOH A 2 151 5 HOH HOH . F 4 HOH A 3 152 6 HOH HOH . F 4 HOH A 4 153 7 HOH HOH . F 4 HOH A 5 154 8 HOH HOH . F 4 HOH A 6 155 9 HOH HOH . F 4 HOH A 7 156 14 HOH HOH . F 4 HOH A 8 157 15 HOH HOH . F 4 HOH A 9 158 16 HOH HOH . F 4 HOH A 10 159 17 HOH HOH . F 4 HOH A 11 160 20 HOH HOH . F 4 HOH A 12 161 21 HOH HOH . F 4 HOH A 13 162 22 HOH HOH . F 4 HOH A 14 163 23 HOH HOH . F 4 HOH A 15 164 25 HOH HOH . F 4 HOH A 16 165 26 HOH HOH . F 4 HOH A 17 166 27 HOH HOH . F 4 HOH A 18 167 28 HOH HOH . F 4 HOH A 19 168 30 HOH HOH . F 4 HOH A 20 169 31 HOH HOH . F 4 HOH A 21 170 32 HOH HOH . F 4 HOH A 22 171 33 HOH HOH . F 4 HOH A 23 172 34 HOH HOH . F 4 HOH A 24 173 35 HOH HOH . F 4 HOH A 25 174 36 HOH HOH . F 4 HOH A 26 175 37 HOH HOH . F 4 HOH A 27 176 40 HOH HOH . F 4 HOH A 28 177 41 HOH HOH . F 4 HOH A 29 178 42 HOH HOH . F 4 HOH A 30 179 43 HOH HOH . G 4 HOH B 1 149 10 HOH HOH . G 4 HOH B 2 150 11 HOH HOH . G 4 HOH B 3 151 12 HOH HOH . G 4 HOH B 4 152 13 HOH HOH . G 4 HOH B 5 153 18 HOH HOH . G 4 HOH B 6 154 19 HOH HOH . G 4 HOH B 7 155 24 HOH HOH . G 4 HOH B 8 156 29 HOH HOH . G 4 HOH B 9 157 38 HOH HOH . G 4 HOH B 10 158 39 HOH HOH . G 4 HOH B 11 159 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . E 2 0.237 -21.221 16.765 1 50.35 ? N1 FMN 148 B 1 HETATM 2 C C2 FMN . . . E 2 0.254 -19.986 16.167 1 48.24 ? C2 FMN 148 B 1 HETATM 3 O O2 FMN . . . E 2 0.908 -19.827 15.132 1 51.36 ? O2 FMN 148 B 1 HETATM 4 N N3 FMN . . . E 2 -0.474 -18.943 16.727 1 54.04 ? N3 FMN 148 B 1 HETATM 5 C C4 FMN . . . E 2 -1.207 -19.14 17.889 1 47.72 ? C4 FMN 148 B 1 HETATM 6 O O4 FMN . . . E 2 -1.842 -18.212 18.392 1 50.66 ? O4 FMN 148 B 1 HETATM 7 C C4A FMN . . . E 2 -1.215 -20.389 18.493 1 49.15 ? C4A FMN 148 B 1 HETATM 8 N N5 FMN . . . E 2 -1.941 -20.596 19.653 1 44.55 ? N5 FMN 148 B 1 HETATM 9 C C5A FMN . . . E 2 -1.941 -21.84 20.249 1 45.52 ? C5A FMN 148 B 1 HETATM 10 C C6 FMN . . . E 2 -2.682 -22.014 21.416 1 50.44 ? C6 FMN 148 B 1 HETATM 11 C C7 FMN . . . E 2 -2.712 -23.251 22.046 1 50.83 ? C7 FMN 148 B 1 HETATM 12 C C7M FMN . . . E 2 -3.519 -23.414 23.304 1 51.93 ? C7M FMN 148 B 1 HETATM 13 C C8 FMN . . . E 2 -2.004 -24.322 21.5 1 47.21 ? C8 FMN 148 B 1 HETATM 14 C C8M FMN . . . E 2 -2.039 -25.667 22.171 1 47.67 ? C8M FMN 148 B 1 HETATM 15 C C9 FMN . . . E 2 -1.271 -24.153 20.324 1 45.77 ? C9 FMN 148 B 1 HETATM 16 C C9A FMN . . . E 2 -1.225 -22.903 19.686 1 47.63 ? C9A FMN 148 B 1 HETATM 17 N N10 FMN . . . E 2 -0.498 -22.694 18.503 1 46.93 ? N10 FMN 148 B 1 HETATM 18 C C10 FMN . . . E 2 -0.486 -21.437 17.923 1 45.86 ? C10 FMN 148 B 1 HETATM 19 C C1' FMN . . . E 2 0.322 -23.783 17.848 1 51.72 ? C1' FMN 148 B 1 HETATM 20 C C2' FMN . . . E 2 -0.361 -24.417 16.634 1 54.11 ? C2' FMN 148 B 1 HETATM 21 O O2' FMN . . . E 2 -1.627 -24.907 16.992 1 43.2 ? O2' FMN 148 B 1 HETATM 22 C C3' FMN . . . E 2 0.529 -25.537 16.082 1 52.25 ? C3' FMN 148 B 1 HETATM 23 O O3' FMN . . . E 2 1.658 -24.928 15.479 1 50.63 ? O3' FMN 148 B 1 HETATM 24 C C4' FMN . . . E 2 -0.209 -26.462 15.101 1 49.31 ? C4' FMN 148 B 1 HETATM 25 O O4' FMN . . . E 2 0.509 -27.656 14.873 1 54.48 ? O4' FMN 148 B 1 HETATM 26 C C5' FMN . . . E 2 -0.406 -25.793 13.758 1 47.3 ? C5' FMN 148 B 1 HETATM 27 O O5' FMN . . . E 2 -1.138 -26.639 12.916 1 42.57 ? O5' FMN 148 B 1 HETATM 28 P P FMN . . . E 2 -0.927 -26.632 11.318 1 43.14 ? P FMN 148 B 1 HETATM 29 O O1P FMN . . . E 2 -1.27 -25.266 10.775 1 43.18 ? O1P FMN 148 B 1 HETATM 30 O O2P FMN . . . E 2 -1.865 -27.662 10.735 1 43.61 ? O2P FMN 148 B 1 HETATM 31 O O3P FMN . . . E 2 0.504 -27.006 10.954 1 47.16 ? O3P FMN 148 B 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #