data_3IN6 # _model_server_result.job_id XcOSKnI0YWtPcMTLvyqukg _model_server_result.datetime_utc '2024-11-13 12:14:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3in6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":149}' # _entry.id 3IN6 # _exptl.entry_id 3IN6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3IN6 _cell.length_a 103.108 _cell.length_b 103.108 _cell.length_c 59.786 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IN6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 1 A GLY 0 1_555 A N MSE 2 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C MSE 2 A MSE 1 1_555 A N LEU 3 A LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C ILE 13 A ILE 12 1_555 A N MSE 14 A MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C MSE 14 A MSE 13 1_555 A N ASP 15 A ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C GLU 53 A GLU 52 1_555 A N MSE 54 A MSE 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C MSE 54 A MSE 53 1_555 A N ILE 55 A ILE 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale7 A C PHE 82 A PHE 81 1_555 A N MSE 83 A MSE 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale8 A C MSE 83 A MSE 82 1_555 A N VAL 84 A VAL 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 B C GLY 1 B GLY 0 1_555 B N MSE 2 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale10 B C MSE 2 B MSE 1 1_555 B N LEU 3 B LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale11 B C ILE 13 B ILE 12 1_555 B N MSE 14 B MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale12 B C MSE 14 B MSE 13 1_555 B N ASP 15 B ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale13 B C GLU 53 B GLU 52 1_555 B N MSE 54 B MSE 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 B C MSE 54 B MSE 53 1_555 B N ILE 55 B ILE 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale15 B C PHE 82 B PHE 81 1_555 B N MSE 83 B MSE 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale16 B C MSE 83 B MSE 82 1_555 B N VAL 84 B VAL 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3IN6 _atom_sites.fract_transf_matrix[1][1] 0.009699 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009699 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016726 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 148 2 FMN FMN . D 3 MPD A 1 149 3 MPD MPD . E 2 FMN B 1 148 1 FMN FMN . F 4 HOH A 1 150 4 HOH HOH . F 4 HOH A 2 151 5 HOH HOH . F 4 HOH A 3 152 6 HOH HOH . F 4 HOH A 4 153 7 HOH HOH . F 4 HOH A 5 154 8 HOH HOH . F 4 HOH A 6 155 9 HOH HOH . F 4 HOH A 7 156 14 HOH HOH . F 4 HOH A 8 157 15 HOH HOH . F 4 HOH A 9 158 16 HOH HOH . F 4 HOH A 10 159 17 HOH HOH . F 4 HOH A 11 160 20 HOH HOH . F 4 HOH A 12 161 21 HOH HOH . F 4 HOH A 13 162 22 HOH HOH . F 4 HOH A 14 163 23 HOH HOH . F 4 HOH A 15 164 25 HOH HOH . F 4 HOH A 16 165 26 HOH HOH . F 4 HOH A 17 166 27 HOH HOH . F 4 HOH A 18 167 28 HOH HOH . F 4 HOH A 19 168 30 HOH HOH . F 4 HOH A 20 169 31 HOH HOH . F 4 HOH A 21 170 32 HOH HOH . F 4 HOH A 22 171 33 HOH HOH . F 4 HOH A 23 172 34 HOH HOH . F 4 HOH A 24 173 35 HOH HOH . F 4 HOH A 25 174 36 HOH HOH . F 4 HOH A 26 175 37 HOH HOH . F 4 HOH A 27 176 40 HOH HOH . F 4 HOH A 28 177 41 HOH HOH . F 4 HOH A 29 178 42 HOH HOH . F 4 HOH A 30 179 43 HOH HOH . G 4 HOH B 1 149 10 HOH HOH . G 4 HOH B 2 150 11 HOH HOH . G 4 HOH B 3 151 12 HOH HOH . G 4 HOH B 4 152 13 HOH HOH . G 4 HOH B 5 153 18 HOH HOH . G 4 HOH B 6 154 19 HOH HOH . G 4 HOH B 7 155 24 HOH HOH . G 4 HOH B 8 156 29 HOH HOH . G 4 HOH B 9 157 38 HOH HOH . G 4 HOH B 10 158 39 HOH HOH . G 4 HOH B 11 159 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . D 3 -5.637 -42.972 8.09 1 47.98 ? C1 MPD 149 A 1 HETATM 2 C C2 MPD . . . D 3 -4.249 -43.538 8.35 1 46.97 ? C2 MPD 149 A 1 HETATM 3 O O2 MPD . . . D 3 -4.35 -44.962 8.128 1 44.38 ? O2 MPD 149 A 1 HETATM 4 C CM MPD . . . D 3 -3.228 -42.979 7.359 1 44.43 ? CM MPD 149 A 1 HETATM 5 C C3 MPD . . . D 3 -3.877 -43.303 9.816 1 46.89 ? C3 MPD 149 A 1 HETATM 6 C C4 MPD . . . D 3 -2.7 -42.367 10.076 1 49.5 ? C4 MPD 149 A 1 HETATM 7 O O4 MPD . . . D 3 -2.891 -41.073 9.522 1 38.43 ? O4 MPD 149 A 1 HETATM 8 C C5 MPD . . . D 3 -2.517 -42.24 11.586 1 52.92 ? C5 MPD 149 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #