data_3IN7 # _model_server_result.job_id XstEO18JuGvvJ4FPx5nF-Q _model_server_result.datetime_utc '2025-02-27 00:13:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3in7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 3IN7 # _exptl.entry_id 3IN7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 556.463 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~2~-({(1R,2R,3S)-2-(methylcarbamoyl)-3-[4-(phosphonooxy)phenyl]cyclopropyl}carbonyl)-D-glutaminyl-D-aspartamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3IN7 _cell.length_a 40.384 _cell.length_b 63.955 _cell.length_c 92.725 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IN7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 A,B,C,D,E,F 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H29 N6 O10 P' _chem_comp.formula_weight 556.463 _chem_comp.id AYQ _chem_comp.mon_nstd_flag . _chem_comp.name N~2~-({(1R,2R,3S)-2-(methylcarbamoyl)-3-[4-(phosphonooxy)phenyl]cyclopropyl}carbonyl)-D-glutaminyl-D-aspartamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA HAA AYQ sing 70 n n CAA HAAA AYQ sing 71 n n OAJ CBD AYQ doub 72 n n OAM PBL AYQ doub 73 n n OAK PBL AYQ sing 74 n n OAK HOAK AYQ sing 75 n n OAL HOAL AYQ sing 76 n n CAN CAP AYQ sing 77 n y CAN HAN AYQ sing 78 n n CAO CAQ AYQ doub 79 n y CAO CBE AYQ sing 80 n y CAO HAO AYQ sing 81 n n CAP HAP AYQ sing 82 n n CAQ CBF AYQ sing 83 n y CAQ HAQ AYQ sing 84 n n NAU CAA AYQ sing 85 n n NAU CBC AYQ sing 86 n n OAX CBE AYQ sing 87 n n OAX PBL AYQ sing 88 n n CBC OAI AYQ doub 89 n n CBE CAN AYQ doub 90 n y CBF CAP AYQ doub 91 n y CBF CBK AYQ sing 92 n n CBI CBC AYQ sing 93 n n CBI CBJ AYQ sing 94 n n CBI HBI AYQ sing 95 n n CBJ CBD AYQ sing 96 n n CBJ HBJ AYQ sing 97 n n CBK CBI AYQ sing 98 n n CBK CBJ AYQ sing 99 n n CBK HBK AYQ sing 100 n n PBL OAL AYQ sing 101 n n CAA H28 AYQ sing 102 n n NAU H29 AYQ sing 103 n n N CA AYQ sing 104 n n N HN AYQ sing 105 n n CA C AYQ sing 106 n n CA CB AYQ sing 107 n n CA HA AYQ sing 108 n n C O AYQ doub 109 n n CB CG AYQ sing 110 n n CB HB AYQ sing 111 n n CB HBA AYQ sing 112 n n CG CD AYQ sing 113 n n CG HG AYQ sing 114 n n CG HGA AYQ sing 115 n n CD OE1 AYQ doub 116 n n CD NE2 AYQ sing 117 n n NE2 HNE2 AYQ sing 118 n n NE2 HNEA AYQ sing 119 n n NAV CBH AYQ sing 120 n n NAV HNAV AYQ sing 121 n n CBH CBA AYQ sing 122 n n CBH CAT AYQ sing 123 n n CBH HBH AYQ sing 124 n n CBA OAG AYQ doub 125 n n CAT CAZ AYQ sing 126 n n CAT HAT AYQ sing 127 n n CAT HATA AYQ sing 128 n n CAZ OAF AYQ doub 129 n n CAZ NAC AYQ sing 130 n n NAC HNAC AYQ sing 131 n n NAC HNAA AYQ sing 132 n n NAD HNAD AYQ sing 133 n n NAD HNAB AYQ sing 134 n n CBD N AYQ sing 135 n n C NAV AYQ sing 136 n n CBA NAD AYQ sing 137 n n # _atom_sites.entry_id 3IN7 _atom_sites.fract_transf_matrix[1][1] 0.024762 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015636 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010785 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AYQ A 1 1 1 AYQ AYQ . D 2 AYQ C 1 1 1 AYQ AYQ . E 3 HOH A 1 2 2 HOH HOH . E 3 HOH A 2 3 3 HOH HOH . E 3 HOH A 3 7 7 HOH HOH . E 3 HOH A 4 8 8 HOH HOH . E 3 HOH A 5 9 9 HOH HOH . E 3 HOH A 6 10 10 HOH HOH . E 3 HOH A 7 11 11 HOH HOH . E 3 HOH A 8 12 12 HOH HOH . E 3 HOH A 9 13 13 HOH HOH . E 3 HOH A 10 14 14 HOH HOH . E 3 HOH A 11 15 15 HOH HOH . E 3 HOH A 12 16 16 HOH HOH . E 3 HOH A 13 17 17 HOH HOH . E 3 HOH A 14 20 20 HOH HOH . E 3 HOH A 15 21 21 HOH HOH . E 3 HOH A 16 22 22 HOH HOH . E 3 HOH A 17 23 23 HOH HOH . E 3 HOH A 18 24 24 HOH HOH . E 3 HOH A 19 25 25 HOH HOH . E 3 HOH A 20 26 26 HOH HOH . E 3 HOH A 21 27 27 HOH HOH . E 3 HOH A 22 28 28 HOH HOH . E 3 HOH A 23 36 36 HOH HOH . E 3 HOH A 24 49 49 HOH HOH . E 3 HOH A 25 51 51 HOH HOH . E 3 HOH A 26 52 52 HOH HOH . E 3 HOH A 27 170 1 HOH HOH . E 3 HOH A 28 171 53 HOH HOH . E 3 HOH A 29 172 54 HOH HOH . E 3 HOH A 30 173 55 HOH HOH . E 3 HOH A 31 174 56 HOH HOH . E 3 HOH A 32 175 57 HOH HOH . E 3 HOH A 33 176 58 HOH HOH . E 3 HOH A 34 177 59 HOH HOH . E 3 HOH A 35 178 60 HOH HOH . E 3 HOH A 36 179 61 HOH HOH . E 3 HOH A 37 180 62 HOH HOH . E 3 HOH A 38 181 63 HOH HOH . E 3 HOH A 39 182 73 HOH HOH . E 3 HOH A 40 183 74 HOH HOH . E 3 HOH A 41 184 75 HOH HOH . E 3 HOH A 42 185 76 HOH HOH . E 3 HOH A 43 186 77 HOH HOH . E 3 HOH A 44 187 79 HOH HOH . E 3 HOH A 45 188 81 HOH HOH . E 3 HOH A 46 189 82 HOH HOH . E 3 HOH A 47 190 83 HOH HOH . E 3 HOH A 48 191 84 HOH HOH . E 3 HOH A 49 192 85 HOH HOH . E 3 HOH A 50 193 89 HOH HOH . E 3 HOH A 51 194 90 HOH HOH . E 3 HOH A 52 195 93 HOH HOH . E 3 HOH A 53 196 94 HOH HOH . E 3 HOH A 54 197 95 HOH HOH . E 3 HOH A 55 198 96 HOH HOH . E 3 HOH A 56 199 97 HOH HOH . E 3 HOH A 57 200 98 HOH HOH . E 3 HOH A 58 201 99 HOH HOH . E 3 HOH A 59 202 100 HOH HOH . E 3 HOH A 60 203 101 HOH HOH . E 3 HOH A 61 204 102 HOH HOH . E 3 HOH A 62 205 103 HOH HOH . E 3 HOH A 63 206 109 HOH HOH . E 3 HOH A 64 207 110 HOH HOH . E 3 HOH A 65 208 117 HOH HOH . E 3 HOH A 66 209 118 HOH HOH . E 3 HOH A 67 210 119 HOH HOH . E 3 HOH A 68 211 120 HOH HOH . E 3 HOH A 69 212 112 HOH HOH . F 3 HOH C 1 4 4 HOH HOH . F 3 HOH C 2 5 5 HOH HOH . F 3 HOH C 3 6 6 HOH HOH . F 3 HOH C 4 18 18 HOH HOH . F 3 HOH C 5 19 19 HOH HOH . F 3 HOH C 6 29 29 HOH HOH . F 3 HOH C 7 30 30 HOH HOH . F 3 HOH C 8 31 31 HOH HOH . F 3 HOH C 9 32 32 HOH HOH . F 3 HOH C 10 33 33 HOH HOH . F 3 HOH C 11 34 34 HOH HOH . F 3 HOH C 12 35 35 HOH HOH . F 3 HOH C 13 37 37 HOH HOH . F 3 HOH C 14 38 38 HOH HOH . F 3 HOH C 15 39 39 HOH HOH . F 3 HOH C 16 40 40 HOH HOH . F 3 HOH C 17 41 41 HOH HOH . F 3 HOH C 18 42 42 HOH HOH . F 3 HOH C 19 43 43 HOH HOH . F 3 HOH C 20 44 44 HOH HOH . F 3 HOH C 21 45 45 HOH HOH . F 3 HOH C 22 46 46 HOH HOH . F 3 HOH C 23 47 47 HOH HOH . F 3 HOH C 24 48 48 HOH HOH . F 3 HOH C 25 50 50 HOH HOH . F 3 HOH C 26 170 64 HOH HOH . F 3 HOH C 27 171 65 HOH HOH . F 3 HOH C 28 172 66 HOH HOH . F 3 HOH C 29 173 67 HOH HOH . F 3 HOH C 30 174 68 HOH HOH . F 3 HOH C 31 175 69 HOH HOH . F 3 HOH C 32 176 70 HOH HOH . F 3 HOH C 33 177 71 HOH HOH . F 3 HOH C 34 178 72 HOH HOH . F 3 HOH C 35 179 80 HOH HOH . F 3 HOH C 36 180 86 HOH HOH . F 3 HOH C 37 181 87 HOH HOH . F 3 HOH C 38 182 88 HOH HOH . F 3 HOH C 39 183 91 HOH HOH . F 3 HOH C 40 184 92 HOH HOH . F 3 HOH C 41 185 104 HOH HOH . F 3 HOH C 42 186 105 HOH HOH . F 3 HOH C 43 187 106 HOH HOH . F 3 HOH C 44 188 107 HOH HOH . F 3 HOH C 45 189 108 HOH HOH . F 3 HOH C 46 190 111 HOH HOH . F 3 HOH C 47 192 113 HOH HOH . F 3 HOH C 48 193 114 HOH HOH . F 3 HOH C 49 194 115 HOH HOH . F 3 HOH C 50 195 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA AYQ . . . D 2 -4.817 7.127 31.451 1 36.25 ? CAA AYQ 1 C 1 HETATM 2 O OAI AYQ . . . D 2 -6.604 7.622 29.478 1 32.97 ? OAI AYQ 1 C 1 HETATM 3 O OAJ AYQ . . . D 2 -11.1 5.938 30.497 1 33.98 ? OAJ AYQ 1 C 1 HETATM 4 O OAM AYQ . . . D 2 -2.298 4.447 24.238 1 31.33 ? OAM AYQ 1 C 1 HETATM 5 O OAK AYQ . . . D 2 -2.646 4.386 26.917 1 36.3 ? OAK AYQ 1 C 1 HETATM 6 O OAL AYQ . . . D 2 -3.558 6.459 25.436 1 30.64 ? OAL AYQ 1 C 1 HETATM 7 C CAN AYQ . . . D 2 -5.164 4.084 27.579 1 33.16 ? CAN AYQ 1 C 1 HETATM 8 C CAO AYQ . . . D 2 -6.538 5.098 25.895 1 31.17 ? CAO AYQ 1 C 1 HETATM 9 C CAP AYQ . . . D 2 -6.174 4.288 28.52 1 33.5 ? CAP AYQ 1 C 1 HETATM 10 C CAQ AYQ . . . D 2 -7.544 5.304 26.833 1 30.22 ? CAQ AYQ 1 C 1 HETATM 11 N NAU AYQ . . . D 2 -6.073 6.38 31.293 1 34.66 ? NAU AYQ 1 C 1 HETATM 12 O OAX AYQ . . . D 2 -4.402 4.254 25.304 1 30.94 ? OAX AYQ 1 C 1 HETATM 13 C CBC AYQ . . . D 2 -6.889 6.769 30.315 1 34.73 ? CBC AYQ 1 C 1 HETATM 14 C CBD AYQ . . . D 2 -10.663 6.507 29.5 1 34.02 ? CBD AYQ 1 C 1 HETATM 15 C CBE AYQ . . . D 2 -5.346 4.483 26.262 1 31.16 ? CBE AYQ 1 C 1 HETATM 16 C CBF AYQ . . . D 2 -7.367 4.895 28.151 1 33.63 ? CBF AYQ 1 C 1 HETATM 17 C CBI AYQ . . . D 2 -8.253 6.076 30.301 1 33.67 ? CBI AYQ 1 C 1 HETATM 18 C CBJ AYQ . . . D 2 -9.176 6.456 29.142 1 33.6 ? CBJ AYQ 1 C 1 HETATM 19 C CBK AYQ . . . D 2 -8.503 5.079 29.163 1 33.32 ? CBK AYQ 1 C 1 HETATM 20 P PBL AYQ . . . D 2 -2.986 4.963 25.6 1 30.09 ? PBL AYQ 1 C 1 HETATM 21 N N AYQ . . . D 2 -11.415 7.211 28.653 1 31.25 ? N AYQ 1 C 1 HETATM 22 C CA AYQ . . . D 2 -12.858 7.422 28.832 1 32.13 ? CA AYQ 1 C 1 HETATM 23 C C AYQ . . . D 2 -13.645 6.122 29.011 1 32.23 ? C AYQ 1 C 1 HETATM 24 O O AYQ . . . D 2 -14.557 6.06 29.833 1 31.81 ? O AYQ 1 C 1 HETATM 25 C CB AYQ . . . D 2 -13.416 8.2 27.638 1 30.93 ? CB AYQ 1 C 1 HETATM 26 C CG AYQ . . . D 2 -12.725 9.555 27.475 1 33.92 ? CG AYQ 1 C 1 HETATM 27 C CD AYQ . . . D 2 -12.977 10.459 28.684 1 35.54 ? CD AYQ 1 C 1 HETATM 28 O OE1 AYQ . . . D 2 -14.064 10.455 29.259 1 36.32 ? OE1 AYQ 1 C 1 HETATM 29 N NE2 AYQ . . . D 2 -11.952 11.229 29.039 1 34.83 ? NE2 AYQ 1 C 1 HETATM 30 N NAV AYQ . . . D 2 -13.302 5.108 28.22 1 30.94 ? NAV AYQ 1 C 1 HETATM 31 C CBH AYQ . . . D 2 -14.003 3.819 28.308 1 31.8 ? CBH AYQ 1 C 1 HETATM 32 C CBA AYQ . . . D 2 -13.177 2.793 29.087 1 31.67 ? CBA AYQ 1 C 1 HETATM 33 O OAG AYQ . . . D 2 -13.308 1.588 28.88 1 31.43 ? OAG AYQ 1 C 1 HETATM 34 C CAT AYQ . . . D 2 -14.334 3.294 26.908 1 31.07 ? CAT AYQ 1 C 1 HETATM 35 C CAZ AYQ . . . D 2 -13.088 3.122 26.037 1 29.07 ? CAZ AYQ 1 C 1 HETATM 36 O OAF AYQ . . . D 2 -11.999 3.581 26.382 1 28.1 ? OAF AYQ 1 C 1 HETATM 37 N NAC AYQ . . . D 2 -13.284 2.45 24.907 1 30.9 ? NAC AYQ 1 C 1 HETATM 38 N NAD AYQ . . . D 2 -12.354 3.304 29.999 1 33.01 ? NAD AYQ 1 C 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 38 #