data_3IN8 # _model_server_result.job_id aC4nFr6PffschlPZcRHZfg _model_server_result.datetime_utc '2024-12-26 20:55:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3in8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3IN8 # _exptl.entry_id 3IN8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 543.507 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{(2S)-4-(methylamino)-4-oxo-2-[4-(phosphonooxy)benzyl]butanoyl}-L-isoleucyl-L-aspartamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3IN8 _cell.length_a 42.034 _cell.length_b 42.034 _cell.length_c 109.757 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IN8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H34 N5 O9 P' _chem_comp.formula_weight 543.507 _chem_comp.id FYI _chem_comp.mon_nstd_flag . _chem_comp.name N-{(2S)-4-(methylamino)-4-oxo-2-[4-(phosphonooxy)benzyl]butanoyl}-L-isoleucyl-L-aspartamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FYI sing 74 n y C1 C6 FYI doub 75 n y C1 H1 FYI sing 76 n n C2 C3 FYI doub 77 n y C2 H2 FYI sing 78 n n C3 C4 FYI sing 79 n y C3 O1 FYI sing 80 n n C4 C5 FYI doub 81 n y C4 H3 FYI sing 82 n n C5 C6 FYI sing 83 n y C5 H4 FYI sing 84 n n C6 C7 FYI sing 85 n n O1 P1 FYI sing 86 n n P1 O2 FYI sing 87 n n P1 O3 FYI doub 88 n n P1 O4 FYI sing 89 n n O2 H5 FYI sing 90 n n O4 H6 FYI sing 91 n n C7 C8 FYI sing 92 n n C7 H7 FYI sing 93 n n C7 H8 FYI sing 94 n n C8 C9 FYI sing 95 n n C8 C10 FYI sing 96 n n C8 H9 FYI sing 97 n n C9 O5 FYI doub 98 n n C9 N2 FYI sing 99 n n C10 C11 FYI sing 100 n n C10 H11 FYI sing 101 n n C10 H12 FYI sing 102 n n C11 N1 FYI sing 103 n n C11 O7 FYI doub 104 n n N1 C12 FYI sing 105 n n N1 H13 FYI sing 106 n n C12 H14 FYI sing 107 n n C12 H15 FYI sing 108 n n C12 H16 FYI sing 109 n n N2 C13 FYI sing 110 n n N2 H17 FYI sing 111 n n C13 C14 FYI sing 112 n n C13 C15 FYI sing 113 n n C13 H19 FYI sing 114 n n C14 O8 FYI doub 115 n n C14 N3 FYI sing 116 n n C15 C16 FYI sing 117 n n C15 C17 FYI sing 118 n n C15 H20 FYI sing 119 n n C16 C18 FYI sing 120 n n C16 H21 FYI sing 121 n n C16 H22 FYI sing 122 n n C17 H23 FYI sing 123 n n C17 H24 FYI sing 124 n n C17 H25 FYI sing 125 n n C18 H26 FYI sing 126 n n C18 H27 FYI sing 127 n n C18 H28 FYI sing 128 n n N3 C19 FYI sing 129 n n N3 H30 FYI sing 130 n n C19 C20 FYI sing 131 n n C19 C21 FYI sing 132 n n C19 H32 FYI sing 133 n n C20 O10 FYI doub 134 n n C20 N5 FYI sing 135 n n C21 C22 FYI sing 136 n n C21 H33 FYI sing 137 n n C21 H34 FYI sing 138 n n C22 O11 FYI doub 139 n n C22 N4 FYI sing 140 n n N4 H35 FYI sing 141 n n N4 H36 FYI sing 142 n n N5 H38 FYI sing 143 n n N5 H39 FYI sing 144 n n # _atom_sites.entry_id 3IN8 _atom_sites.fract_transf_matrix[1][1] 0.02379 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02379 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FYI A 1 1 1 FYI FYI . C 3 FMT A 1 170 170 FMT FMT . D 4 HOH A 1 2 2 HOH HOH . D 4 HOH A 2 3 3 HOH HOH . D 4 HOH A 3 4 4 HOH HOH . D 4 HOH A 4 5 5 HOH HOH . D 4 HOH A 5 6 6 HOH HOH . D 4 HOH A 6 7 7 HOH HOH . D 4 HOH A 7 8 8 HOH HOH . D 4 HOH A 8 9 9 HOH HOH . D 4 HOH A 9 10 10 HOH HOH . D 4 HOH A 10 11 11 HOH HOH . D 4 HOH A 11 12 12 HOH HOH . D 4 HOH A 12 13 13 HOH HOH . D 4 HOH A 13 14 14 HOH HOH . D 4 HOH A 14 15 15 HOH HOH . D 4 HOH A 15 16 16 HOH HOH . D 4 HOH A 16 17 17 HOH HOH . D 4 HOH A 17 18 18 HOH HOH . D 4 HOH A 18 19 19 HOH HOH . D 4 HOH A 19 20 20 HOH HOH . D 4 HOH A 20 21 21 HOH HOH . D 4 HOH A 21 22 22 HOH HOH . D 4 HOH A 22 23 23 HOH HOH . D 4 HOH A 23 24 24 HOH HOH . D 4 HOH A 24 25 25 HOH HOH . D 4 HOH A 25 26 26 HOH HOH . D 4 HOH A 26 27 27 HOH HOH . D 4 HOH A 27 28 28 HOH HOH . D 4 HOH A 28 29 29 HOH HOH . D 4 HOH A 29 30 30 HOH HOH . D 4 HOH A 30 31 31 HOH HOH . D 4 HOH A 31 32 32 HOH HOH . D 4 HOH A 32 33 33 HOH HOH . D 4 HOH A 33 34 34 HOH HOH . D 4 HOH A 34 35 35 HOH HOH . D 4 HOH A 35 36 36 HOH HOH . D 4 HOH A 36 37 37 HOH HOH . D 4 HOH A 37 38 38 HOH HOH . D 4 HOH A 38 39 39 HOH HOH . D 4 HOH A 39 40 40 HOH HOH . D 4 HOH A 40 41 41 HOH HOH . D 4 HOH A 41 42 42 HOH HOH . D 4 HOH A 42 43 43 HOH HOH . D 4 HOH A 43 44 44 HOH HOH . D 4 HOH A 44 45 45 HOH HOH . D 4 HOH A 45 46 46 HOH HOH . D 4 HOH A 46 47 47 HOH HOH . D 4 HOH A 47 48 48 HOH HOH . D 4 HOH A 48 49 49 HOH HOH . D 4 HOH A 49 50 50 HOH HOH . D 4 HOH A 50 51 51 HOH HOH . D 4 HOH A 51 52 52 HOH HOH . D 4 HOH A 52 171 171 HOH HOH . D 4 HOH A 53 172 172 HOH HOH . D 4 HOH A 54 173 173 HOH HOH . D 4 HOH A 55 174 174 HOH HOH . D 4 HOH A 56 175 175 HOH HOH . D 4 HOH A 57 176 176 HOH HOH . D 4 HOH A 58 177 177 HOH HOH . D 4 HOH A 59 178 178 HOH HOH . D 4 HOH A 60 179 179 HOH HOH . D 4 HOH A 61 180 180 HOH HOH . D 4 HOH A 62 181 181 HOH HOH . D 4 HOH A 63 182 182 HOH HOH . D 4 HOH A 64 183 183 HOH HOH . D 4 HOH A 65 184 184 HOH HOH . D 4 HOH A 66 185 185 HOH HOH . D 4 HOH A 67 186 186 HOH HOH . D 4 HOH A 68 187 187 HOH HOH . D 4 HOH A 69 188 188 HOH HOH . D 4 HOH A 70 189 189 HOH HOH . D 4 HOH A 71 190 190 HOH HOH . D 4 HOH A 72 191 191 HOH HOH . D 4 HOH A 73 192 192 HOH HOH . D 4 HOH A 74 193 193 HOH HOH . D 4 HOH A 75 194 194 HOH HOH . D 4 HOH A 76 195 195 HOH HOH . D 4 HOH A 77 196 196 HOH HOH . D 4 HOH A 78 197 197 HOH HOH . D 4 HOH A 79 198 198 HOH HOH . D 4 HOH A 80 199 199 HOH HOH . D 4 HOH A 81 200 200 HOH HOH . D 4 HOH A 82 201 201 HOH HOH . D 4 HOH A 83 202 202 HOH HOH . D 4 HOH A 84 203 203 HOH HOH . D 4 HOH A 85 204 204 HOH HOH . D 4 HOH A 86 205 205 HOH HOH . D 4 HOH A 87 206 206 HOH HOH . D 4 HOH A 88 207 207 HOH HOH . D 4 HOH A 89 208 208 HOH HOH . D 4 HOH A 90 209 209 HOH HOH . D 4 HOH A 91 210 210 HOH HOH . D 4 HOH A 92 211 211 HOH HOH . D 4 HOH A 93 212 212 HOH HOH . D 4 HOH A 94 213 213 HOH HOH . D 4 HOH A 95 214 214 HOH HOH . D 4 HOH A 96 215 215 HOH HOH . D 4 HOH A 97 216 216 HOH HOH . D 4 HOH A 98 217 217 HOH HOH . D 4 HOH A 99 218 218 HOH HOH . D 4 HOH A 100 219 219 HOH HOH . D 4 HOH A 101 220 220 HOH HOH . D 4 HOH A 102 221 221 HOH HOH . D 4 HOH A 103 222 222 HOH HOH . D 4 HOH A 104 223 223 HOH HOH . D 4 HOH A 105 224 224 HOH HOH . D 4 HOH A 106 225 225 HOH HOH . D 4 HOH A 107 226 226 HOH HOH . D 4 HOH A 108 227 227 HOH HOH . D 4 HOH A 109 228 228 HOH HOH . D 4 HOH A 110 229 229 HOH HOH . D 4 HOH A 111 230 230 HOH HOH . D 4 HOH A 112 231 231 HOH HOH . D 4 HOH A 113 232 232 HOH HOH . D 4 HOH A 114 233 233 HOH HOH . D 4 HOH A 115 234 234 HOH HOH . D 4 HOH A 116 235 235 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FYI . . . B 2 -10.935 10.611 -2.039 1 11.41 ? C1 FYI 1 A 1 HETATM 2 C C2 FYI . . . B 2 -10.611 10 -3.249 1 13.44 ? C2 FYI 1 A 1 HETATM 3 C C3 FYI . . . B 2 -9.921 10.708 -4.232 1 12.47 ? C3 FYI 1 A 1 HETATM 4 C C4 FYI . . . B 2 -9.548 12.025 -3.98 1 12.39 ? C4 FYI 1 A 1 HETATM 5 C C5 FYI . . . B 2 -9.869 12.639 -2.773 1 11.07 ? C5 FYI 1 A 1 HETATM 6 C C6 FYI . . . B 2 -10.573 11.936 -1.8 1 12.22 ? C6 FYI 1 A 1 HETATM 7 O O1 FYI . . . B 2 -9.628 10.217 -5.469 1 12.72 ? O1 FYI 1 A 1 HETATM 8 P P1 FYI . . . B 2 -10.044 8.698 -5.82 1 13.5 ? P1 FYI 1 A 1 HETATM 9 O O2 FYI . . . B 2 -11.433 8.335 -5.461 1 13.3 ? O2 FYI 1 A 1 HETATM 10 O O3 FYI . . . B 2 -9.796 8.577 -7.407 1 15.06 ? O3 FYI 1 A 1 HETATM 11 O O4 FYI . . . B 2 -8.948 7.739 -5.134 1 11.81 ? O4 FYI 1 A 1 HETATM 12 C C7 FYI . . . B 2 -10.986 12.661 -0.515 1 12.61 ? C7 FYI 1 A 1 HETATM 13 C C8 FYI . . . B 2 -12.429 13.177 -0.532 1 14.09 ? C8 FYI 1 A 1 HETATM 14 C C9 FYI . . . B 2 -12.771 13.881 0.783 1 14.16 ? C9 FYI 1 A 1 HETATM 15 O O5 FYI . . . B 2 -12.37 15.021 1.015 1 13.69 ? O5 FYI 1 A 1 HETATM 16 C C10 FYI . . . B 2 -12.696 14.162 -1.675 1 16 ? C10 FYI 1 A 1 HETATM 17 C C11 FYI . . . B 2 -12.922 13.48 -3.027 1 19.49 ? C11 FYI 1 A 1 HETATM 18 N N1 FYI . . . B 2 -12.441 14.153 -4.07 1 21.49 ? N1 FYI 1 A 1 HETATM 19 C C12 FYI . . . B 2 -12.635 13.576 -5.409 1 21.72 ? C12 FYI 1 A 1 HETATM 20 O O7 FYI . . . B 2 -13.521 12.409 -3.111 1 19.29 ? O7 FYI 1 A 1 HETATM 21 N N2 FYI . . . B 2 -13.517 13.17 1.625 1 14.22 ? N2 FYI 1 A 1 HETATM 22 C C13 FYI . . . B 2 -13.976 13.686 2.924 1 14.28 ? C13 FYI 1 A 1 HETATM 23 C C14 FYI . . . B 2 -12.837 14.25 3.776 1 14.65 ? C14 FYI 1 A 1 HETATM 24 O O8 FYI . . . B 2 -12.989 15.309 4.385 1 14.68 ? O8 FYI 1 A 1 HETATM 25 C C15 FYI . . . B 2 -14.719 12.585 3.685 1 14.94 ? C15 FYI 1 A 1 HETATM 26 C C16 FYI . . . B 2 -15.926 12.06 2.901 1 15.66 ? C16 FYI 1 A 1 HETATM 27 C C17 FYI . . . B 2 -15.136 13.058 5.081 1 15.17 ? C17 FYI 1 A 1 HETATM 28 C C18 FYI . . . B 2 -16.942 13.153 2.558 1 17.56 ? C18 FYI 1 A 1 HETATM 29 N N3 FYI . . . B 2 -11.714 13.537 3.806 1 12.32 ? N3 FYI 1 A 1 HETATM 30 C C19 FYI . . . B 2 -10.552 13.96 4.602 1 13.32 ? C19 FYI 1 A 1 HETATM 31 C C20 FYI . . . B 2 -9.504 14.661 3.731 1 14.99 ? C20 FYI 1 A 1 HETATM 32 O O10 FYI . . . B 2 -8.336 14.756 4.103 1 17.43 ? O10 FYI 1 A 1 HETATM 33 C C21 FYI . . . B 2 -9.94 12.755 5.321 1 11.34 ? C21 FYI 1 A 1 HETATM 34 C C22 FYI . . . B 2 -9.434 11.682 4.352 1 10.8 ? C22 FYI 1 A 1 HETATM 35 O O11 FYI . . . B 2 -9.909 11.572 3.224 1 10.44 ? O11 FYI 1 A 1 HETATM 36 N N4 FYI . . . B 2 -8.459 10.913 4.828 1 9.59 ? N4 FYI 1 A 1 HETATM 37 N N5 FYI . . . B 2 -9.954 15.157 2.582 1 15.91 ? N5 FYI 1 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 37 #