data_3INA # _model_server_result.job_id QO1F1t42x8cEfpaWAgKfyA _model_server_result.datetime_utc '2025-02-05 10:39:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ina # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":379}' # _entry.id 3INA # _exptl.entry_id 3INA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.39 _cell.angle_gamma 90 _cell.entry_id 3INA _cell.length_a 112.185 _cell.length_b 63.433 _cell.length_c 65.29 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3INA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 SGN IDS C1 O1 . O4 HO4 . sing 2 ? 2 3 2 IDS SGN C1 O1 . O4 HO4 . sing 3 ? 2 4 3 SGN IDS C1 O1 . O4 HO4 . sing 4 ? 2 5 4 IDS SGN C1 O1 . O4 HO4 . sing 5 ? 2 6 5 SUS IDS C1 O1 . O4 HO4 . sing 6 ? 2 7 6 IDS SUS C1 O1 . O4 HO4 . sing 7 ? 2 8 7 SGN IDS C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B IDS 1 B 1 IDS L 501 IDS 2 n B SGN 2 B 2 SGN L 502 SGN 2 n B IDS 3 B 3 IDS L 503 IDS 2 n B SGN 4 B 4 SGN L 504 SGN 2 n B IDS 5 B 5 IDS L 505 IDS 2 n B SUS 6 B 6 SUS L 506 SUS 2 n B IDS 7 B 7 IDS L 507 IDS 2 n B SGN 8 B 8 SGN L 508 SGN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O4 IDS . B IDS 1 1_555 B C1 SGN . B SGN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 sing covale ? covale2 B O4 SGN . B SGN 2 1_555 B C1 IDS . B IDS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 sing covale ? covale3 B O4 IDS . B IDS 3 1_555 B C1 SGN . B SGN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 sing covale ? covale4 B O4 SGN . B SGN 4 1_555 B C1 IDS . B IDS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 sing covale ? covale5 B O4 IDS . B IDS 5 1_555 B C1 SUS . B SUS 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 sing covale ? covale6 B O4 SUS . B SUS 6 1_555 B C1 IDS . B IDS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 sing covale ? covale7 B O4 IDS . B IDS 7 1_555 B C1 SGN . B SGN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 sing metalc ? metalc1 A OE1 GLU 222 A GLU 222 1_555 C CA CA . A CA 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc2 A OE2 GLU 222 A GLU 222 1_555 C CA CA . A CA 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc3 A O TRP 248 A TRP 248 1_555 C CA CA . A CA 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc4 A O ASN 345 A ASN 345 1_555 C CA CA . A CA 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc5 A OD1 ASP 346 A ASP 346 1_555 C CA CA . A CA 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? metalc ? metalc6 C CA CA . A CA 379 1_555 D O HOH . A HOH 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc7 C CA CA . A CA 379 1_555 D O HOH . A HOH 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3INA _atom_sites.fract_transf_matrix[1][1] 0.008914 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003672 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015765 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016565 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 379 1 CA CA . D 4 HOH A 1 380 1 HOH HOH . D 4 HOH A 2 381 2 HOH HOH . D 4 HOH A 3 382 3 HOH HOH . D 4 HOH A 4 383 4 HOH HOH . D 4 HOH A 5 384 5 HOH HOH . D 4 HOH A 6 385 6 HOH HOH . D 4 HOH A 7 386 7 HOH HOH . D 4 HOH A 8 387 8 HOH HOH . D 4 HOH A 9 388 9 HOH HOH . D 4 HOH A 10 389 10 HOH HOH . D 4 HOH A 11 390 11 HOH HOH . D 4 HOH A 12 391 12 HOH HOH . D 4 HOH A 13 392 13 HOH HOH . D 4 HOH A 14 393 14 HOH HOH . D 4 HOH A 15 394 15 HOH HOH . D 4 HOH A 16 395 16 HOH HOH . D 4 HOH A 17 396 17 HOH HOH . D 4 HOH A 18 397 18 HOH HOH . D 4 HOH A 19 398 19 HOH HOH . D 4 HOH A 20 399 20 HOH HOH . D 4 HOH A 21 400 21 HOH HOH . D 4 HOH A 22 401 22 HOH HOH . D 4 HOH A 23 402 23 HOH HOH . D 4 HOH A 24 403 24 HOH HOH . D 4 HOH A 25 404 25 HOH HOH . D 4 HOH A 26 405 26 HOH HOH . D 4 HOH A 27 406 27 HOH HOH . D 4 HOH A 28 407 28 HOH HOH . D 4 HOH A 29 408 29 HOH HOH . D 4 HOH A 30 409 30 HOH HOH . D 4 HOH A 31 410 31 HOH HOH . D 4 HOH A 32 411 32 HOH HOH . D 4 HOH A 33 412 33 HOH HOH . D 4 HOH A 34 413 34 HOH HOH . D 4 HOH A 35 414 35 HOH HOH . D 4 HOH A 36 415 36 HOH HOH . D 4 HOH A 37 416 37 HOH HOH . D 4 HOH A 38 417 38 HOH HOH . D 4 HOH A 39 418 39 HOH HOH . D 4 HOH A 40 419 40 HOH HOH . D 4 HOH A 41 420 41 HOH HOH . D 4 HOH A 42 421 42 HOH HOH . D 4 HOH A 43 422 43 HOH HOH . D 4 HOH A 44 423 44 HOH HOH . D 4 HOH A 45 424 45 HOH HOH . D 4 HOH A 46 425 46 HOH HOH . D 4 HOH A 47 426 47 HOH HOH . D 4 HOH A 48 427 48 HOH HOH . D 4 HOH A 49 428 49 HOH HOH . D 4 HOH A 50 429 50 HOH HOH . D 4 HOH A 51 430 51 HOH HOH . D 4 HOH A 52 431 52 HOH HOH . D 4 HOH A 53 432 53 HOH HOH . D 4 HOH A 54 433 54 HOH HOH . D 4 HOH A 55 434 55 HOH HOH . D 4 HOH A 56 435 56 HOH HOH . D 4 HOH A 57 436 57 HOH HOH . D 4 HOH A 58 437 58 HOH HOH . D 4 HOH A 59 438 59 HOH HOH . D 4 HOH A 60 439 60 HOH HOH . D 4 HOH A 61 440 61 HOH HOH . D 4 HOH A 62 441 62 HOH HOH . D 4 HOH A 63 442 63 HOH HOH . D 4 HOH A 64 443 64 HOH HOH . D 4 HOH A 65 444 65 HOH HOH . D 4 HOH A 66 445 66 HOH HOH . D 4 HOH A 67 446 67 HOH HOH . D 4 HOH A 68 447 68 HOH HOH . D 4 HOH A 69 448 69 HOH HOH . D 4 HOH A 70 449 70 HOH HOH . D 4 HOH A 71 450 71 HOH HOH . D 4 HOH A 72 451 72 HOH HOH . D 4 HOH A 73 452 73 HOH HOH . D 4 HOH A 74 453 74 HOH HOH . D 4 HOH A 75 454 75 HOH HOH . D 4 HOH A 76 455 76 HOH HOH . D 4 HOH A 77 456 77 HOH HOH . D 4 HOH A 78 457 78 HOH HOH . D 4 HOH A 79 458 79 HOH HOH . D 4 HOH A 80 459 80 HOH HOH . D 4 HOH A 81 460 81 HOH HOH . D 4 HOH A 82 461 82 HOH HOH . D 4 HOH A 83 462 83 HOH HOH . D 4 HOH A 84 463 84 HOH HOH . D 4 HOH A 85 464 85 HOH HOH . D 4 HOH A 86 465 86 HOH HOH . D 4 HOH A 87 466 87 HOH HOH . D 4 HOH A 88 467 88 HOH HOH . D 4 HOH A 89 468 89 HOH HOH . D 4 HOH A 90 469 90 HOH HOH . D 4 HOH A 91 470 91 HOH HOH . D 4 HOH A 92 471 92 HOH HOH . D 4 HOH A 93 472 93 HOH HOH . D 4 HOH A 94 473 94 HOH HOH . D 4 HOH A 95 474 95 HOH HOH . D 4 HOH A 96 475 96 HOH HOH . D 4 HOH A 97 476 97 HOH HOH . D 4 HOH A 98 477 98 HOH HOH . D 4 HOH A 99 478 99 HOH HOH . D 4 HOH A 100 479 100 HOH HOH . D 4 HOH A 101 480 101 HOH HOH . D 4 HOH A 102 481 102 HOH HOH . D 4 HOH A 103 482 103 HOH HOH . D 4 HOH A 104 483 104 HOH HOH . D 4 HOH A 105 484 105 HOH HOH . D 4 HOH A 106 485 106 HOH HOH . D 4 HOH A 107 486 107 HOH HOH . D 4 HOH A 108 487 108 HOH HOH . D 4 HOH A 109 488 109 HOH HOH . D 4 HOH A 110 489 110 HOH HOH . D 4 HOH A 111 490 111 HOH HOH . D 4 HOH A 112 491 112 HOH HOH . D 4 HOH A 113 492 113 HOH HOH . D 4 HOH A 114 493 114 HOH HOH . D 4 HOH A 115 494 115 HOH HOH . D 4 HOH A 116 495 116 HOH HOH . D 4 HOH A 117 496 117 HOH HOH . D 4 HOH A 118 497 118 HOH HOH . D 4 HOH A 119 498 119 HOH HOH . D 4 HOH A 120 499 120 HOH HOH . D 4 HOH A 121 500 121 HOH HOH . D 4 HOH A 122 509 122 HOH HOH . D 4 HOH A 123 510 123 HOH HOH . D 4 HOH A 124 511 124 HOH HOH . D 4 HOH A 125 512 125 HOH HOH . D 4 HOH A 126 513 126 HOH HOH . D 4 HOH A 127 514 127 HOH HOH . D 4 HOH A 128 515 128 HOH HOH . D 4 HOH A 129 516 129 HOH HOH . D 4 HOH A 130 517 130 HOH HOH . D 4 HOH A 131 518 131 HOH HOH . D 4 HOH A 132 519 132 HOH HOH . D 4 HOH A 133 520 133 HOH HOH . D 4 HOH A 134 521 134 HOH HOH . D 4 HOH A 135 522 135 HOH HOH . D 4 HOH A 136 523 136 HOH HOH . D 4 HOH A 137 524 137 HOH HOH . D 4 HOH A 138 525 138 HOH HOH . D 4 HOH A 139 526 139 HOH HOH . D 4 HOH A 140 527 140 HOH HOH . D 4 HOH A 141 528 141 HOH HOH . D 4 HOH A 142 529 142 HOH HOH . D 4 HOH A 143 530 143 HOH HOH . D 4 HOH A 144 531 144 HOH HOH . D 4 HOH A 145 532 145 HOH HOH . D 4 HOH A 146 533 146 HOH HOH . D 4 HOH A 147 534 147 HOH HOH . D 4 HOH A 148 535 148 HOH HOH . D 4 HOH A 149 536 149 HOH HOH . D 4 HOH A 150 537 150 HOH HOH . D 4 HOH A 151 538 151 HOH HOH . D 4 HOH A 152 539 152 HOH HOH . D 4 HOH A 153 540 153 HOH HOH . D 4 HOH A 154 541 154 HOH HOH . D 4 HOH A 155 542 155 HOH HOH . D 4 HOH A 156 543 156 HOH HOH . D 4 HOH A 157 544 157 HOH HOH . D 4 HOH A 158 545 158 HOH HOH . D 4 HOH A 159 546 159 HOH HOH . D 4 HOH A 160 547 160 HOH HOH . D 4 HOH A 161 548 161 HOH HOH . D 4 HOH A 162 549 162 HOH HOH . D 4 HOH A 163 550 163 HOH HOH . D 4 HOH A 164 551 164 HOH HOH . D 4 HOH A 165 552 165 HOH HOH . D 4 HOH A 166 553 166 HOH HOH . D 4 HOH A 167 554 167 HOH HOH . D 4 HOH A 168 555 168 HOH HOH . D 4 HOH A 169 556 169 HOH HOH . D 4 HOH A 170 557 170 HOH HOH . D 4 HOH A 171 558 171 HOH HOH . D 4 HOH A 172 559 172 HOH HOH . D 4 HOH A 173 560 173 HOH HOH . D 4 HOH A 174 561 174 HOH HOH . D 4 HOH A 175 562 175 HOH HOH . D 4 HOH A 176 563 176 HOH HOH . D 4 HOH A 177 564 177 HOH HOH . D 4 HOH A 178 565 178 HOH HOH . D 4 HOH A 179 566 179 HOH HOH . D 4 HOH A 180 567 180 HOH HOH . D 4 HOH A 181 568 181 HOH HOH . D 4 HOH A 182 569 182 HOH HOH . D 4 HOH A 183 570 183 HOH HOH . D 4 HOH A 184 571 184 HOH HOH . D 4 HOH A 185 572 185 HOH HOH . D 4 HOH A 186 573 186 HOH HOH . D 4 HOH A 187 574 187 HOH HOH . D 4 HOH A 188 575 188 HOH HOH . D 4 HOH A 189 576 189 HOH HOH . D 4 HOH A 190 577 190 HOH HOH . D 4 HOH A 191 578 191 HOH HOH . D 4 HOH A 192 579 192 HOH HOH . D 4 HOH A 193 580 193 HOH HOH . D 4 HOH A 194 581 194 HOH HOH . D 4 HOH A 195 582 195 HOH HOH . D 4 HOH A 196 583 196 HOH HOH . D 4 HOH A 197 584 197 HOH HOH . D 4 HOH A 198 585 198 HOH HOH . D 4 HOH A 199 586 199 HOH HOH . D 4 HOH A 200 587 200 HOH HOH . D 4 HOH A 201 588 201 HOH HOH . D 4 HOH A 202 589 202 HOH HOH . D 4 HOH A 203 590 203 HOH HOH . D 4 HOH A 204 591 204 HOH HOH . D 4 HOH A 205 592 205 HOH HOH . D 4 HOH A 206 593 206 HOH HOH . D 4 HOH A 207 594 207 HOH HOH . D 4 HOH A 208 595 208 HOH HOH . D 4 HOH A 209 596 209 HOH HOH . D 4 HOH A 210 597 210 HOH HOH . D 4 HOH A 211 598 211 HOH HOH . D 4 HOH A 212 599 212 HOH HOH . D 4 HOH A 213 600 213 HOH HOH . D 4 HOH A 214 601 214 HOH HOH . D 4 HOH A 215 602 215 HOH HOH . D 4 HOH A 216 603 216 HOH HOH . D 4 HOH A 217 604 217 HOH HOH . D 4 HOH A 218 605 218 HOH HOH . D 4 HOH A 219 606 219 HOH HOH . D 4 HOH A 220 607 220 HOH HOH . D 4 HOH A 221 608 221 HOH HOH . D 4 HOH A 222 609 222 HOH HOH . D 4 HOH A 223 610 223 HOH HOH . D 4 HOH A 224 611 224 HOH HOH . D 4 HOH A 225 612 225 HOH HOH . D 4 HOH A 226 613 226 HOH HOH . D 4 HOH A 227 614 227 HOH HOH . D 4 HOH A 228 615 228 HOH HOH . D 4 HOH A 229 616 229 HOH HOH . D 4 HOH A 230 617 230 HOH HOH . D 4 HOH A 231 618 231 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 30.302 _atom_site.Cartn_y 1.263 _atom_site.Cartn_z -1.705 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.13 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 379 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #