data_3INC # _model_server_result.job_id ipCthTbW8FB_i5u6cAe4SQ _model_server_result.datetime_utc '2025-03-04 23:26:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3inc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":31}' # _entry.id 3INC # _exptl.entry_id 3INC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3INC _cell.length_a 81.654 _cell.length_b 81.654 _cell.length_c 33.767 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3INC _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? disulf ? disulf2 A SG CYS 7 A CYS 7 1_555 B SG CYS 7 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf3 A SG CYS 20 A CYS 20 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf4 C SG CYS 6 C CYS 6 1_555 C SG CYS 11 C CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf5 C SG CYS 7 C CYS 7 1_555 D SG CYS 7 D CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? disulf ? disulf6 C SG CYS 20 C CYS 20 1_555 D SG CYS 19 D CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc1 B NE2 HIS 10 B HIS 10 1_555 E NI NI . B NI 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc2 E NI NI . B NI 31 1_555 H O HOH . B HOH 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc3 D NE2 HIS 10 D HIS 10 1_555 F NI NI . D NI 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc4 F NI NI . D NI 31 1_555 J O HOH . D HOH 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3INC _atom_sites.fract_transf_matrix[1][1] 0.012247 _atom_sites.fract_transf_matrix[1][2] 0.007071 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014141 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029615 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NI B 1 31 2 NI NI . F 3 NI D 1 31 1 NI NI . G 4 HOH A 1 22 8 HOH HOH . G 4 HOH A 2 23 9 HOH HOH . G 4 HOH A 3 24 10 HOH HOH . G 4 HOH A 4 25 15 HOH HOH . G 4 HOH A 5 26 3 HOH HOH . G 4 HOH A 6 32 32 HOH HOH . G 4 HOH A 7 33 33 HOH HOH . G 4 HOH A 8 37 5 HOH HOH . H 4 HOH B 1 32 1 HOH HOH . H 4 HOH B 2 34 34 HOH HOH . H 4 HOH B 3 35 35 HOH HOH . H 4 HOH B 4 36 4 HOH HOH . H 4 HOH B 5 38 7 HOH HOH . H 4 HOH B 6 39 39 HOH HOH . H 4 HOH B 7 40 40 HOH HOH . H 4 HOH B 8 41 13 HOH HOH . H 4 HOH B 9 42 14 HOH HOH . H 4 HOH B 10 43 17 HOH HOH . H 4 HOH B 11 44 44 HOH HOH . H 4 HOH B 12 45 19 HOH HOH . H 4 HOH B 13 47 30 HOH HOH . H 4 HOH B 14 49 49 HOH HOH . I 4 HOH C 1 22 2 HOH HOH . I 4 HOH C 2 23 18 HOH HOH . I 4 HOH C 3 24 21 HOH HOH . I 4 HOH C 4 27 27 HOH HOH . I 4 HOH C 5 36 36 HOH HOH . I 4 HOH C 6 42 42 HOH HOH . J 4 HOH D 1 32 6 HOH HOH . J 4 HOH D 2 33 11 HOH HOH . J 4 HOH D 3 34 12 HOH HOH . J 4 HOH D 4 35 16 HOH HOH . J 4 HOH D 5 36 20 HOH HOH . J 4 HOH D 6 37 37 HOH HOH . J 4 HOH D 7 38 38 HOH HOH . J 4 HOH D 8 39 22 HOH HOH . J 4 HOH D 9 40 23 HOH HOH . J 4 HOH D 10 41 41 HOH HOH . J 4 HOH D 11 42 24 HOH HOH . J 4 HOH D 12 43 25 HOH HOH . J 4 HOH D 13 44 28 HOH HOH . J 4 HOH D 14 45 45 HOH HOH . J 4 HOH D 15 46 26 HOH HOH . J 4 HOH D 16 47 47 HOH HOH . J 4 HOH D 17 48 48 HOH HOH . J 4 HOH D 18 49 29 HOH HOH . J 4 HOH D 19 50 50 HOH HOH . J 4 HOH D 20 51 51 HOH HOH . J 4 HOH D 21 52 46 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 0 _atom_site.Cartn_y 0 _atom_site.Cartn_z -7.951 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 27.23 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 31 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #