data_3IND # _model_server_result.job_id BTXfmIk46pM5Zgewd7vvUQ _model_server_result.datetime_utc '2024-12-25 06:54:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ind # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3IND # _exptl.entry_id 3IND _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 323.432 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5S)-2-amino-3-methyl-5-phenyl-5-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]-3,5-dihydro-4H-imidazol-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.69 _cell.angle_gamma 90 _cell.entry_id 3IND _cell.length_a 73.137 _cell.length_b 104.33 _cell.length_c 49.551 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IND _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 171 A CYS 217 1_555 A SG CYS 375 A CYS 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 233 A CYS 279 1_555 A SG CYS 398 A CYS 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 285 A CYS 331 1_555 A SG CYS 335 A CYS 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C20 H25 N3 O' _chem_comp.formula_weight 323.432 _chem_comp.id 593 _chem_comp.mon_nstd_flag . _chem_comp.name (5S)-2-amino-3-methyl-5-phenyl-5-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]-3,5-dihydro-4H-imidazol-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 593 sing 1 n n C1 H1 593 sing 2 n n C1 H1A 593 sing 3 n n C1 H1B 593 sing 4 n n C4 N1 593 sing 5 n n N1 C2 593 sing 6 n n C2 O1 593 doub 7 n n C3 C2 593 sing 8 n n N2 C4 593 doub 9 n n N2 C3 593 sing 10 n n C11 C3 593 sing 11 n n C3 C5 593 sing 12 n n N3 C4 593 sing 13 n n N3 HN3 593 sing 14 n n N3 HN3A 593 sing 15 n n C6 C5 593 doub 16 n y C5 C10 593 sing 17 n y C6 C7 593 sing 18 n y C6 H6 593 sing 19 n n C7 C8 593 doub 20 n y C7 H7 593 sing 21 n n C8 C9 593 sing 22 n y C8 H8 593 sing 23 n n C10 C9 593 doub 24 n y C9 H9 593 sing 25 n n C10 H10 593 sing 26 n n C20 C11 593 sing 27 n n C16 C11 593 sing 28 n n C11 C12 593 sing 29 n n C13 C12 593 sing 30 n n C12 H12 593 sing 31 n n C12 H12A 593 sing 32 n n C19 C13 593 sing 33 n n C14 C13 593 sing 34 n n C13 H13 593 sing 35 n n C15 C14 593 sing 36 n n C14 H14 593 sing 37 n n C14 H14A 593 sing 38 n n C17 C15 593 sing 39 n n C15 C16 593 sing 40 n n C15 H15 593 sing 41 n n C16 H16 593 sing 42 n n C16 H16A 593 sing 43 n n C17 C18 593 sing 44 n n C17 H17 593 sing 45 n n C17 H17A 593 sing 46 n n C18 C20 593 sing 47 n n C18 C19 593 sing 48 n n C18 H18 593 sing 49 n n C19 H19 593 sing 50 n n C19 H19A 593 sing 51 n n C20 H20 593 sing 52 n n C20 H20A 593 sing 53 n n # _atom_sites.entry_id 3IND _atom_sites.fract_transf_matrix[1][1] 0.013673 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001122 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009585 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020249 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 593 A 1 1 1 593 593 . C 3 HOH A 1 3 3 HOH HOH . C 3 HOH A 2 4 4 HOH HOH . C 3 HOH A 3 6 6 HOH HOH . C 3 HOH A 4 7 7 HOH HOH . C 3 HOH A 5 8 8 HOH HOH . C 3 HOH A 6 9 9 HOH HOH . C 3 HOH A 7 10 10 HOH HOH . C 3 HOH A 8 11 11 HOH HOH . C 3 HOH A 9 12 12 HOH HOH . C 3 HOH A 10 13 13 HOH HOH . C 3 HOH A 11 14 14 HOH HOH . C 3 HOH A 12 15 15 HOH HOH . C 3 HOH A 13 16 16 HOH HOH . C 3 HOH A 14 17 17 HOH HOH . C 3 HOH A 15 18 18 HOH HOH . C 3 HOH A 16 19 19 HOH HOH . C 3 HOH A 17 20 20 HOH HOH . C 3 HOH A 18 21 21 HOH HOH . C 3 HOH A 19 22 22 HOH HOH . C 3 HOH A 20 23 23 HOH HOH . C 3 HOH A 21 24 24 HOH HOH . C 3 HOH A 22 25 25 HOH HOH . C 3 HOH A 23 26 26 HOH HOH . C 3 HOH A 24 27 27 HOH HOH . C 3 HOH A 25 28 28 HOH HOH . C 3 HOH A 26 29 29 HOH HOH . C 3 HOH A 27 30 30 HOH HOH . C 3 HOH A 28 31 31 HOH HOH . C 3 HOH A 29 32 32 HOH HOH . C 3 HOH A 30 33 33 HOH HOH . C 3 HOH A 31 34 34 HOH HOH . C 3 HOH A 32 35 35 HOH HOH . C 3 HOH A 33 36 36 HOH HOH . C 3 HOH A 34 37 37 HOH HOH . C 3 HOH A 35 38 38 HOH HOH . C 3 HOH A 36 39 39 HOH HOH . C 3 HOH A 37 40 40 HOH HOH . C 3 HOH A 38 41 41 HOH HOH . C 3 HOH A 39 42 42 HOH HOH . C 3 HOH A 40 43 43 HOH HOH . C 3 HOH A 41 44 44 HOH HOH . C 3 HOH A 42 462 1 HOH HOH . C 3 HOH A 43 463 47 HOH HOH . C 3 HOH A 44 464 48 HOH HOH . C 3 HOH A 45 465 49 HOH HOH . C 3 HOH A 46 466 51 HOH HOH . C 3 HOH A 47 467 52 HOH HOH . C 3 HOH A 48 468 53 HOH HOH . C 3 HOH A 49 469 54 HOH HOH . C 3 HOH A 50 470 55 HOH HOH . C 3 HOH A 51 471 56 HOH HOH . C 3 HOH A 52 472 57 HOH HOH . C 3 HOH A 53 473 58 HOH HOH . C 3 HOH A 54 474 59 HOH HOH . C 3 HOH A 55 475 60 HOH HOH . C 3 HOH A 56 476 61 HOH HOH . C 3 HOH A 57 477 62 HOH HOH . C 3 HOH A 58 478 63 HOH HOH . C 3 HOH A 59 479 64 HOH HOH . C 3 HOH A 60 480 65 HOH HOH . C 3 HOH A 61 481 66 HOH HOH . C 3 HOH A 62 482 67 HOH HOH . C 3 HOH A 63 483 68 HOH HOH . C 3 HOH A 64 484 70 HOH HOH . C 3 HOH A 65 485 71 HOH HOH . C 3 HOH A 66 486 72 HOH HOH . C 3 HOH A 67 487 73 HOH HOH . C 3 HOH A 68 488 74 HOH HOH . C 3 HOH A 69 489 75 HOH HOH . C 3 HOH A 70 490 76 HOH HOH . C 3 HOH A 71 491 77 HOH HOH . C 3 HOH A 72 492 78 HOH HOH . C 3 HOH A 73 493 80 HOH HOH . C 3 HOH A 74 494 81 HOH HOH . C 3 HOH A 75 495 82 HOH HOH . C 3 HOH A 76 496 84 HOH HOH . C 3 HOH A 77 497 85 HOH HOH . C 3 HOH A 78 498 87 HOH HOH . C 3 HOH A 79 499 88 HOH HOH . C 3 HOH A 80 500 90 HOH HOH . C 3 HOH A 81 501 91 HOH HOH . C 3 HOH A 82 502 93 HOH HOH . C 3 HOH A 83 503 95 HOH HOH . C 3 HOH A 84 504 96 HOH HOH . C 3 HOH A 85 505 97 HOH HOH . C 3 HOH A 86 506 98 HOH HOH . C 3 HOH A 87 507 100 HOH HOH . C 3 HOH A 88 508 101 HOH HOH . C 3 HOH A 89 509 102 HOH HOH . C 3 HOH A 90 510 104 HOH HOH . C 3 HOH A 91 511 105 HOH HOH . C 3 HOH A 92 512 106 HOH HOH . C 3 HOH A 93 513 107 HOH HOH . C 3 HOH A 94 514 108 HOH HOH . C 3 HOH A 95 515 109 HOH HOH . C 3 HOH A 96 516 110 HOH HOH . C 3 HOH A 97 517 111 HOH HOH . C 3 HOH A 98 518 112 HOH HOH . C 3 HOH A 99 519 113 HOH HOH . C 3 HOH A 100 520 114 HOH HOH . C 3 HOH A 101 521 115 HOH HOH . C 3 HOH A 102 522 117 HOH HOH . C 3 HOH A 103 523 118 HOH HOH . C 3 HOH A 104 524 120 HOH HOH . C 3 HOH A 105 525 121 HOH HOH . C 3 HOH A 106 526 122 HOH HOH . C 3 HOH A 107 527 123 HOH HOH . C 3 HOH A 108 528 124 HOH HOH . C 3 HOH A 109 529 125 HOH HOH . C 3 HOH A 110 530 126 HOH HOH . C 3 HOH A 111 531 127 HOH HOH . C 3 HOH A 112 532 128 HOH HOH . C 3 HOH A 113 533 129 HOH HOH . C 3 HOH A 114 534 132 HOH HOH . C 3 HOH A 115 535 133 HOH HOH . C 3 HOH A 116 536 134 HOH HOH . C 3 HOH A 117 537 135 HOH HOH . C 3 HOH A 118 538 136 HOH HOH . C 3 HOH A 119 539 137 HOH HOH . C 3 HOH A 120 540 138 HOH HOH . C 3 HOH A 121 541 139 HOH HOH . C 3 HOH A 122 542 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 593 . . . B 2 16.259 -4.192 17.568 1 14.29 ? C1 593 1 A 1 HETATM 2 N N1 593 . . . B 2 15.612 -5.365 16.999 1 18.92 ? N1 593 1 A 1 HETATM 3 O O1 593 . . . B 2 14.81 -6.314 18.948 1 15.8 ? O1 593 1 A 1 HETATM 4 C C2 593 . . . B 2 14.955 -6.311 17.737 1 15.17 ? C2 593 1 A 1 HETATM 5 N N2 593 . . . B 2 15.009 -6.857 15.454 1 16.56 ? N2 593 1 A 1 HETATM 6 C C3 593 . . . B 2 14.423 -7.364 16.741 1 19.99 ? C3 593 1 A 1 HETATM 7 N N3 593 . . . B 2 16.319 -5.036 14.764 1 13.01 ? N3 593 1 A 1 HETATM 8 C C4 593 . . . B 2 15.561 -5.704 15.683 1 15.47 ? C4 593 1 A 1 HETATM 9 C C5 593 . . . B 2 14.961 -8.782 17.019 1 14.77 ? C5 593 1 A 1 HETATM 10 C C6 593 . . . B 2 15.316 -9.654 15.977 1 16.2 ? C6 593 1 A 1 HETATM 11 C C7 593 . . . B 2 15.802 -10.94 16.231 1 17.99 ? C7 593 1 A 1 HETATM 12 C C8 593 . . . B 2 15.945 -11.389 17.541 1 20.18 ? C8 593 1 A 1 HETATM 13 C C9 593 . . . B 2 15.601 -10.549 18.593 1 20.63 ? C9 593 1 A 1 HETATM 14 C C10 593 . . . B 2 15.114 -9.263 18.335 1 24.75 ? C10 593 1 A 1 HETATM 15 C C11 593 . . . B 2 12.839 -7.293 16.611 1 17.35 ? C11 593 1 A 1 HETATM 16 C C12 593 . . . B 2 12.132 -7.944 17.847 1 21.78 ? C12 593 1 A 1 HETATM 17 C C13 593 . . . B 2 10.599 -7.851 17.739 1 20.64 ? C13 593 1 A 1 HETATM 18 C C14 593 . . . B 2 10.18 -6.376 17.667 1 21.72 ? C14 593 1 A 1 HETATM 19 C C15 593 . . . B 2 10.82 -5.712 16.439 1 23.13 ? C15 593 1 A 1 HETATM 20 C C16 593 . . . B 2 12.351 -5.808 16.546 1 16.83 ? C16 593 1 A 1 HETATM 21 C C17 593 . . . B 2 10.367 -6.433 15.162 1 15.6 ? C17 593 1 A 1 HETATM 22 C C18 593 . . . B 2 10.772 -7.911 15.229 1 17.57 ? C18 593 1 A 1 HETATM 23 C C19 593 . . . B 2 10.136 -8.567 16.463 1 20.98 ? C19 593 1 A 1 HETATM 24 C C20 593 . . . B 2 12.305 -8.013 15.336 1 18.21 ? C20 593 1 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 24 #