data_3INE # _model_server_result.job_id N2DvoIrNA6UyJ6FCBMDpLQ _model_server_result.datetime_utc '2024-12-26 20:47:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ine # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3INE # _exptl.entry_id 3INE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 367.485 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5S)-2-amino-5-(4-methoxy-3-methylphenyl)-3-methyl-5-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]-3,5-dihydro-4H-imidazol-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.69 _cell.angle_gamma 90 _cell.entry_id 3INE _cell.length_a 73.137 _cell.length_b 104.33 _cell.length_c 49.551 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3INE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 171 A CYS 217 1_555 A SG CYS 375 A CYS 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 233 A CYS 279 1_555 A SG CYS 398 A CYS 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 285 A CYS 331 1_555 A SG CYS 335 A CYS 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'C22 H29 N3 O2' _chem_comp.formula_weight 367.485 _chem_comp.id X17 _chem_comp.mon_nstd_flag . _chem_comp.name (5S)-2-amino-5-(4-methoxy-3-methylphenyl)-3-methyl-5-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]-3,5-dihydro-4H-imidazol-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 X17 sing 376 n n C1 H1 X17 sing 377 n n C1 H1A X17 sing 378 n n C1 H1B X17 sing 379 n n C11 N1 X17 sing 380 n n N1 C12 X17 sing 381 n n N1 C10 X17 sing 382 n n C8 O1 X17 sing 383 n n C7 O1 X17 sing 384 n n C7 C2 X17 doub 385 n y C3 C2 X17 sing 386 n y N2 C11 X17 doub 387 n n N2 C9 X17 sing 388 n n C10 O2 X17 doub 389 n n C4 C3 X17 doub 390 n y C3 H3 X17 sing 391 n n N3 C11 X17 sing 392 n n N3 HN3 X17 sing 393 n n N3 HN3A X17 sing 394 n n C5 C4 X17 sing 395 n y C9 C4 X17 sing 396 n n C5 C6 X17 doub 397 n y C5 H5 X17 sing 398 n n C6 C7 X17 sing 399 n y C6 H6 X17 sing 400 n n C8 H8 X17 sing 401 n n C8 H8A X17 sing 402 n n C8 H8B X17 sing 403 n n C13 C9 X17 sing 404 n n C9 C10 X17 sing 405 n n C12 H12 X17 sing 406 n n C12 H12A X17 sing 407 n n C12 H12B X17 sing 408 n n C22 C13 X17 sing 409 n n C14 C13 X17 sing 410 n n C13 C18 X17 sing 411 n n C15 C14 X17 sing 412 n n C14 H14 X17 sing 413 n n C14 H14A X17 sing 414 n n C21 C15 X17 sing 415 n n C15 C16 X17 sing 416 n n C15 H15 X17 sing 417 n n C16 C17 X17 sing 418 n n C16 H16 X17 sing 419 n n C16 H16A X17 sing 420 n n C19 C17 X17 sing 421 n n C17 C18 X17 sing 422 n n C17 H17 X17 sing 423 n n C18 H18 X17 sing 424 n n C18 H18A X17 sing 425 n n C20 C19 X17 sing 426 n n C19 H19 X17 sing 427 n n C19 H19A X17 sing 428 n n C21 C20 X17 sing 429 n n C20 C22 X17 sing 430 n n C20 H20 X17 sing 431 n n C21 H21 X17 sing 432 n n C21 H21A X17 sing 433 n n C22 H22 X17 sing 434 n n C22 H22A X17 sing 435 n n # _atom_sites.entry_id 3INE _atom_sites.fract_transf_matrix[1][1] 0.013673 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001122 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009585 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020249 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 X17 A 1 1 1 X17 X17 . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 7 7 HOH HOH . C 3 HOH A 7 8 8 HOH HOH . C 3 HOH A 8 9 9 HOH HOH . C 3 HOH A 9 10 10 HOH HOH . C 3 HOH A 10 11 11 HOH HOH . C 3 HOH A 11 12 12 HOH HOH . C 3 HOH A 12 13 13 HOH HOH . C 3 HOH A 13 14 14 HOH HOH . C 3 HOH A 14 15 15 HOH HOH . C 3 HOH A 15 16 16 HOH HOH . C 3 HOH A 16 17 17 HOH HOH . C 3 HOH A 17 18 18 HOH HOH . C 3 HOH A 18 19 19 HOH HOH . C 3 HOH A 19 20 20 HOH HOH . C 3 HOH A 20 21 21 HOH HOH . C 3 HOH A 21 22 22 HOH HOH . C 3 HOH A 22 23 23 HOH HOH . C 3 HOH A 23 24 24 HOH HOH . C 3 HOH A 24 25 25 HOH HOH . C 3 HOH A 25 26 26 HOH HOH . C 3 HOH A 26 27 27 HOH HOH . C 3 HOH A 27 28 28 HOH HOH . C 3 HOH A 28 29 29 HOH HOH . C 3 HOH A 29 30 30 HOH HOH . C 3 HOH A 30 31 31 HOH HOH . C 3 HOH A 31 32 32 HOH HOH . C 3 HOH A 32 33 33 HOH HOH . C 3 HOH A 33 34 34 HOH HOH . C 3 HOH A 34 35 35 HOH HOH . C 3 HOH A 35 36 36 HOH HOH . C 3 HOH A 36 37 37 HOH HOH . C 3 HOH A 37 39 39 HOH HOH . C 3 HOH A 38 40 40 HOH HOH . C 3 HOH A 39 41 41 HOH HOH . C 3 HOH A 40 42 42 HOH HOH . C 3 HOH A 41 43 43 HOH HOH . C 3 HOH A 42 44 44 HOH HOH . C 3 HOH A 43 45 45 HOH HOH . C 3 HOH A 44 46 46 HOH HOH . C 3 HOH A 45 462 462 HOH HOH . C 3 HOH A 46 463 463 HOH HOH . C 3 HOH A 47 464 464 HOH HOH . C 3 HOH A 48 465 465 HOH HOH . C 3 HOH A 49 466 466 HOH HOH . C 3 HOH A 50 467 467 HOH HOH . C 3 HOH A 51 468 468 HOH HOH . C 3 HOH A 52 469 469 HOH HOH . C 3 HOH A 53 470 470 HOH HOH . C 3 HOH A 54 471 471 HOH HOH . C 3 HOH A 55 472 472 HOH HOH . C 3 HOH A 56 473 473 HOH HOH . C 3 HOH A 57 474 474 HOH HOH . C 3 HOH A 58 475 475 HOH HOH . C 3 HOH A 59 476 476 HOH HOH . C 3 HOH A 60 477 477 HOH HOH . C 3 HOH A 61 478 478 HOH HOH . C 3 HOH A 62 479 479 HOH HOH . C 3 HOH A 63 480 480 HOH HOH . C 3 HOH A 64 481 481 HOH HOH . C 3 HOH A 65 482 482 HOH HOH . C 3 HOH A 66 483 483 HOH HOH . C 3 HOH A 67 484 484 HOH HOH . C 3 HOH A 68 485 485 HOH HOH . C 3 HOH A 69 486 486 HOH HOH . C 3 HOH A 70 487 487 HOH HOH . C 3 HOH A 71 488 488 HOH HOH . C 3 HOH A 72 489 489 HOH HOH . C 3 HOH A 73 490 490 HOH HOH . C 3 HOH A 74 491 491 HOH HOH . C 3 HOH A 75 492 492 HOH HOH . C 3 HOH A 76 493 493 HOH HOH . C 3 HOH A 77 494 494 HOH HOH . C 3 HOH A 78 495 495 HOH HOH . C 3 HOH A 79 496 496 HOH HOH . C 3 HOH A 80 497 497 HOH HOH . C 3 HOH A 81 498 498 HOH HOH . C 3 HOH A 82 499 499 HOH HOH . C 3 HOH A 83 500 500 HOH HOH . C 3 HOH A 84 501 501 HOH HOH . C 3 HOH A 85 502 502 HOH HOH . C 3 HOH A 86 503 503 HOH HOH . C 3 HOH A 87 504 504 HOH HOH . C 3 HOH A 88 505 505 HOH HOH . C 3 HOH A 89 506 506 HOH HOH . C 3 HOH A 90 507 507 HOH HOH . C 3 HOH A 91 508 508 HOH HOH . C 3 HOH A 92 509 509 HOH HOH . C 3 HOH A 93 510 510 HOH HOH . C 3 HOH A 94 511 511 HOH HOH . C 3 HOH A 95 512 512 HOH HOH . C 3 HOH A 96 513 513 HOH HOH . C 3 HOH A 97 514 514 HOH HOH . C 3 HOH A 98 515 515 HOH HOH . C 3 HOH A 99 516 516 HOH HOH . C 3 HOH A 100 517 517 HOH HOH . C 3 HOH A 101 518 518 HOH HOH . C 3 HOH A 102 519 519 HOH HOH . C 3 HOH A 103 520 520 HOH HOH . C 3 HOH A 104 521 521 HOH HOH . C 3 HOH A 105 522 522 HOH HOH . C 3 HOH A 106 523 523 HOH HOH . C 3 HOH A 107 524 524 HOH HOH . C 3 HOH A 108 525 525 HOH HOH . C 3 HOH A 109 526 526 HOH HOH . C 3 HOH A 110 527 527 HOH HOH . C 3 HOH A 111 528 528 HOH HOH . C 3 HOH A 112 529 529 HOH HOH . C 3 HOH A 113 530 530 HOH HOH . C 3 HOH A 114 531 531 HOH HOH . C 3 HOH A 115 532 532 HOH HOH . C 3 HOH A 116 533 533 HOH HOH . C 3 HOH A 117 534 534 HOH HOH . C 3 HOH A 118 535 535 HOH HOH . C 3 HOH A 119 536 536 HOH HOH . C 3 HOH A 120 537 537 HOH HOH . C 3 HOH A 121 538 538 HOH HOH . C 3 HOH A 122 539 539 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 X17 . . . B 2 16.038 -11.107 19.841 1 28.82 ? C1 X17 1 A 1 HETATM 2 N N1 X17 . . . B 2 15.736 -5.481 17.051 1 19.37 ? N1 X17 1 A 1 HETATM 3 O O1 X17 . . . B 2 16.584 -12.715 17.637 1 24.93 ? O1 X17 1 A 1 HETATM 4 C C2 X17 . . . B 2 15.803 -10.642 18.428 1 23.64 ? C2 X17 1 A 1 HETATM 5 N N2 X17 . . . B 2 14.992 -6.847 15.441 1 18.82 ? N2 X17 1 A 1 HETATM 6 O O2 X17 . . . B 2 14.949 -6.492 18.972 1 21.75 ? O2 X17 1 A 1 HETATM 7 C C3 X17 . . . B 2 15.295 -9.351 18.206 1 21.93 ? C3 X17 1 A 1 HETATM 8 N N3 X17 . . . B 2 16.412 -5.092 14.809 1 16.52 ? N3 X17 1 A 1 HETATM 9 C C4 X17 . . . B 2 15.055 -8.858 16.912 1 18.65 ? C4 X17 1 A 1 HETATM 10 C C5 X17 . . . B 2 15.34 -9.705 15.83 1 16.46 ? C5 X17 1 A 1 HETATM 11 C C6 X17 . . . B 2 15.849 -10.996 16.034 1 20.46 ? C6 X17 1 A 1 HETATM 12 C C7 X17 . . . B 2 16.083 -11.471 17.332 1 21.57 ? C7 X17 1 A 1 HETATM 13 C C8 X17 . . . B 2 17.096 -13.472 16.546 1 25.98 ? C8 X17 1 A 1 HETATM 14 C C9 X17 . . . B 2 14.493 -7.437 16.727 1 21.49 ? C9 X17 1 A 1 HETATM 15 C C10 X17 . . . B 2 15.071 -6.441 17.756 1 20.99 ? C10 X17 1 A 1 HETATM 16 C C11 X17 . . . B 2 15.649 -5.76 15.722 1 19.63 ? C11 X17 1 A 1 HETATM 17 C C12 X17 . . . B 2 16.41 -4.348 17.669 1 18.13 ? C12 X17 1 A 1 HETATM 18 C C13 X17 . . . B 2 12.904 -7.389 16.713 1 20.31 ? C13 X17 1 A 1 HETATM 19 C C14 X17 . . . B 2 12.393 -5.912 16.644 1 19.66 ? C14 X17 1 A 1 HETATM 20 C C15 X17 . . . B 2 10.858 -5.846 16.619 1 23.32 ? C15 X17 1 A 1 HETATM 21 C C16 X17 . . . B 2 10.305 -6.502 17.893 1 21.72 ? C16 X17 1 A 1 HETATM 22 C C17 X17 . . . B 2 10.737 -7.973 17.949 1 23.09 ? C17 X17 1 A 1 HETATM 23 C C18 X17 . . . B 2 12.277 -8.04 17.984 1 21.17 ? C18 X17 1 A 1 HETATM 24 C C19 X17 . . . B 2 10.222 -8.707 16.704 1 21.99 ? C19 X17 1 A 1 HETATM 25 C C20 X17 . . . B 2 10.784 -8.058 15.432 1 21.56 ? C20 X17 1 A 1 HETATM 26 C C21 X17 . . . B 2 10.341 -6.59 15.376 1 21.37 ? C21 X17 1 A 1 HETATM 27 C C22 X17 . . . B 2 12.324 -8.136 15.469 1 21.26 ? C22 X17 1 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 27 #