data_3ING # _model_server_result.job_id JVWVGZqFmo4H5iQpV8unjA _model_server_result.datetime_utc '2024-11-13 12:19:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ing # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":329}' # _entry.id 3ING # _exptl.entry_id 3ING _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ING _cell.length_a 69.821 _cell.length_b 92.113 _cell.length_c 120.788 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ING _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 69.821 0 60.394 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 9 A LEU 8 1_555 A N MSE 10 A MSE 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C MSE 10 A MSE 9 1_555 A N GLY 11 A GLY 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C LEU 78 A LEU 77 1_555 A N MSE 79 A MSE 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? covale ? covale4 A C MSE 79 A MSE 78 1_555 A N GLY 80 A GLY 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C ARG 104 A ARG 103 1_555 A N MSE 105 A MSE 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 105 A MSE 104 1_555 A N ALA 106 A ALA 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 A C GLY 110 A GLY 109 1_555 A N MSE 111 A MSE 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C MSE 111 A MSE 110 1_555 A N ASN 112 A ASN 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale9 A C ILE 128 A ILE 127 1_555 A N MSE 129 A MSE 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale10 A C MSE 129 A MSE 128 1_555 A N ASP 130 A ASP 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale11 A C ASN 181 A ASN 180 1_555 A N MSE 182 A MSE 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale12 A C MSE 182 A MSE 181 1_555 A N ALA 183 A ALA 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale13 A C LEU 277 A LEU 276 1_555 A N MSE 278 A MSE 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale14 A C MSE 278 A MSE 277 1_555 A N SER 279 A SER 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale15 A C GLY 281 A GLY 280 1_555 A N MSE 282 A MSE 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale16 A C MSE 282 A MSE 281 1_555 A N ASP 283 A ASP 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A O GLU 142 A GLU 141 1_555 B NA NA . A NA 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc2 A OE2 GLU 142 A GLU 141 1_555 B NA NA . A NA 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? metalc ? metalc3 A O VAL 145 A VAL 144 1_555 B NA NA . A NA 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc4 A O ALA 146 A ALA 145 1_555 B NA NA . A NA 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? metalc ? metalc5 A O VAL 149 A VAL 148 1_555 B NA NA . A NA 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3ING _atom_sites.fract_transf_matrix[1][1] 0.014322 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010856 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008279 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 325 1 NA NA . C 3 NDP A 1 326 2 NDP NDP . D 4 EDO A 1 327 3 EDO EDO . E 4 EDO A 1 328 4 EDO EDO . F 4 EDO A 1 329 5 EDO EDO . G 4 EDO A 1 330 6 EDO EDO . H 4 EDO A 1 331 7 EDO EDO . I 4 EDO A 1 332 8 EDO EDO . J 5 HOH A 1 333 9 HOH HOH . J 5 HOH A 2 334 10 HOH HOH . J 5 HOH A 3 335 11 HOH HOH . J 5 HOH A 4 336 12 HOH HOH . J 5 HOH A 5 337 13 HOH HOH . J 5 HOH A 6 338 14 HOH HOH . J 5 HOH A 7 339 15 HOH HOH . J 5 HOH A 8 340 16 HOH HOH . J 5 HOH A 9 341 17 HOH HOH . J 5 HOH A 10 342 18 HOH HOH . J 5 HOH A 11 343 19 HOH HOH . J 5 HOH A 12 344 20 HOH HOH . J 5 HOH A 13 345 21 HOH HOH . J 5 HOH A 14 346 22 HOH HOH . J 5 HOH A 15 347 23 HOH HOH . J 5 HOH A 16 348 24 HOH HOH . J 5 HOH A 17 349 25 HOH HOH . J 5 HOH A 18 350 26 HOH HOH . J 5 HOH A 19 351 27 HOH HOH . J 5 HOH A 20 352 28 HOH HOH . J 5 HOH A 21 353 29 HOH HOH . J 5 HOH A 22 354 30 HOH HOH . J 5 HOH A 23 355 31 HOH HOH . J 5 HOH A 24 356 32 HOH HOH . J 5 HOH A 25 357 33 HOH HOH . J 5 HOH A 26 358 34 HOH HOH . J 5 HOH A 27 359 35 HOH HOH . J 5 HOH A 28 360 36 HOH HOH . J 5 HOH A 29 361 37 HOH HOH . J 5 HOH A 30 362 38 HOH HOH . J 5 HOH A 31 363 39 HOH HOH . J 5 HOH A 32 364 40 HOH HOH . J 5 HOH A 33 365 41 HOH HOH . J 5 HOH A 34 366 42 HOH HOH . J 5 HOH A 35 367 43 HOH HOH . J 5 HOH A 36 368 44 HOH HOH . J 5 HOH A 37 369 45 HOH HOH . J 5 HOH A 38 370 46 HOH HOH . J 5 HOH A 39 371 47 HOH HOH . J 5 HOH A 40 372 48 HOH HOH . J 5 HOH A 41 373 49 HOH HOH . J 5 HOH A 42 374 50 HOH HOH . J 5 HOH A 43 375 51 HOH HOH . J 5 HOH A 44 376 52 HOH HOH . J 5 HOH A 45 377 53 HOH HOH . J 5 HOH A 46 378 54 HOH HOH . J 5 HOH A 47 379 55 HOH HOH . J 5 HOH A 48 380 56 HOH HOH . J 5 HOH A 49 381 57 HOH HOH . J 5 HOH A 50 382 58 HOH HOH . J 5 HOH A 51 383 59 HOH HOH . J 5 HOH A 52 384 60 HOH HOH . J 5 HOH A 53 385 61 HOH HOH . J 5 HOH A 54 386 62 HOH HOH . J 5 HOH A 55 387 63 HOH HOH . J 5 HOH A 56 388 64 HOH HOH . J 5 HOH A 57 389 65 HOH HOH . J 5 HOH A 58 390 66 HOH HOH . J 5 HOH A 59 391 67 HOH HOH . J 5 HOH A 60 392 68 HOH HOH . J 5 HOH A 61 393 69 HOH HOH . J 5 HOH A 62 394 70 HOH HOH . J 5 HOH A 63 395 71 HOH HOH . J 5 HOH A 64 396 72 HOH HOH . J 5 HOH A 65 397 73 HOH HOH . J 5 HOH A 66 398 74 HOH HOH . J 5 HOH A 67 399 75 HOH HOH . J 5 HOH A 68 400 76 HOH HOH . J 5 HOH A 69 401 77 HOH HOH . J 5 HOH A 70 402 78 HOH HOH . J 5 HOH A 71 403 79 HOH HOH . J 5 HOH A 72 404 80 HOH HOH . J 5 HOH A 73 405 81 HOH HOH . J 5 HOH A 74 406 82 HOH HOH . J 5 HOH A 75 407 83 HOH HOH . J 5 HOH A 76 408 84 HOH HOH . J 5 HOH A 77 409 85 HOH HOH . J 5 HOH A 78 410 86 HOH HOH . J 5 HOH A 79 411 87 HOH HOH . J 5 HOH A 80 412 88 HOH HOH . J 5 HOH A 81 413 89 HOH HOH . J 5 HOH A 82 414 90 HOH HOH . J 5 HOH A 83 415 91 HOH HOH . J 5 HOH A 84 416 92 HOH HOH . J 5 HOH A 85 417 93 HOH HOH . J 5 HOH A 86 418 94 HOH HOH . J 5 HOH A 87 419 95 HOH HOH . J 5 HOH A 88 420 96 HOH HOH . J 5 HOH A 89 421 97 HOH HOH . J 5 HOH A 90 422 98 HOH HOH . J 5 HOH A 91 423 99 HOH HOH . J 5 HOH A 92 424 100 HOH HOH . J 5 HOH A 93 425 101 HOH HOH . J 5 HOH A 94 426 102 HOH HOH . J 5 HOH A 95 427 103 HOH HOH . J 5 HOH A 96 428 104 HOH HOH . J 5 HOH A 97 429 105 HOH HOH . J 5 HOH A 98 430 106 HOH HOH . J 5 HOH A 99 431 107 HOH HOH . J 5 HOH A 100 432 108 HOH HOH . J 5 HOH A 101 433 109 HOH HOH . J 5 HOH A 102 434 110 HOH HOH . J 5 HOH A 103 435 111 HOH HOH . J 5 HOH A 104 436 112 HOH HOH . J 5 HOH A 105 437 113 HOH HOH . J 5 HOH A 106 438 114 HOH HOH . J 5 HOH A 107 439 115 HOH HOH . J 5 HOH A 108 440 116 HOH HOH . J 5 HOH A 109 441 117 HOH HOH . J 5 HOH A 110 442 118 HOH HOH . J 5 HOH A 111 443 119 HOH HOH . J 5 HOH A 112 444 120 HOH HOH . J 5 HOH A 113 445 121 HOH HOH . J 5 HOH A 114 446 122 HOH HOH . J 5 HOH A 115 447 123 HOH HOH . J 5 HOH A 116 448 124 HOH HOH . J 5 HOH A 117 449 125 HOH HOH . J 5 HOH A 118 450 126 HOH HOH . J 5 HOH A 119 451 127 HOH HOH . J 5 HOH A 120 452 128 HOH HOH . J 5 HOH A 121 453 129 HOH HOH . J 5 HOH A 122 454 130 HOH HOH . J 5 HOH A 123 455 131 HOH HOH . J 5 HOH A 124 456 132 HOH HOH . J 5 HOH A 125 457 133 HOH HOH . J 5 HOH A 126 458 134 HOH HOH . J 5 HOH A 127 459 135 HOH HOH . J 5 HOH A 128 460 136 HOH HOH . J 5 HOH A 129 461 137 HOH HOH . J 5 HOH A 130 462 138 HOH HOH . J 5 HOH A 131 463 139 HOH HOH . J 5 HOH A 132 464 140 HOH HOH . J 5 HOH A 133 465 141 HOH HOH . J 5 HOH A 134 466 142 HOH HOH . J 5 HOH A 135 467 143 HOH HOH . J 5 HOH A 136 468 144 HOH HOH . J 5 HOH A 137 469 145 HOH HOH . J 5 HOH A 138 470 146 HOH HOH . J 5 HOH A 139 471 147 HOH HOH . J 5 HOH A 140 472 148 HOH HOH . J 5 HOH A 141 473 149 HOH HOH . J 5 HOH A 142 474 150 HOH HOH . J 5 HOH A 143 475 151 HOH HOH . J 5 HOH A 144 476 152 HOH HOH . J 5 HOH A 145 477 153 HOH HOH . J 5 HOH A 146 478 154 HOH HOH . J 5 HOH A 147 479 155 HOH HOH . J 5 HOH A 148 480 156 HOH HOH . J 5 HOH A 149 481 157 HOH HOH . J 5 HOH A 150 482 158 HOH HOH . J 5 HOH A 151 483 159 HOH HOH . J 5 HOH A 152 484 160 HOH HOH . J 5 HOH A 153 485 161 HOH HOH . J 5 HOH A 154 486 162 HOH HOH . J 5 HOH A 155 487 163 HOH HOH . J 5 HOH A 156 488 164 HOH HOH . J 5 HOH A 157 489 165 HOH HOH . J 5 HOH A 158 490 166 HOH HOH . J 5 HOH A 159 491 167 HOH HOH . J 5 HOH A 160 492 168 HOH HOH . J 5 HOH A 161 493 169 HOH HOH . J 5 HOH A 162 494 170 HOH HOH . J 5 HOH A 163 495 171 HOH HOH . J 5 HOH A 164 496 172 HOH HOH . J 5 HOH A 165 497 173 HOH HOH . J 5 HOH A 166 498 174 HOH HOH . J 5 HOH A 167 499 175 HOH HOH . J 5 HOH A 168 500 176 HOH HOH . J 5 HOH A 169 501 177 HOH HOH . J 5 HOH A 170 502 178 HOH HOH . J 5 HOH A 171 503 179 HOH HOH . J 5 HOH A 172 504 180 HOH HOH . J 5 HOH A 173 505 181 HOH HOH . J 5 HOH A 174 506 182 HOH HOH . J 5 HOH A 175 507 183 HOH HOH . J 5 HOH A 176 508 184 HOH HOH . J 5 HOH A 177 509 185 HOH HOH . J 5 HOH A 178 510 186 HOH HOH . J 5 HOH A 179 511 187 HOH HOH . J 5 HOH A 180 512 188 HOH HOH . J 5 HOH A 181 513 189 HOH HOH . J 5 HOH A 182 514 190 HOH HOH . J 5 HOH A 183 515 191 HOH HOH . J 5 HOH A 184 516 192 HOH HOH . J 5 HOH A 185 517 193 HOH HOH . J 5 HOH A 186 518 194 HOH HOH . J 5 HOH A 187 519 195 HOH HOH . J 5 HOH A 188 520 196 HOH HOH . J 5 HOH A 189 521 197 HOH HOH . J 5 HOH A 190 522 198 HOH HOH . J 5 HOH A 191 523 199 HOH HOH . J 5 HOH A 192 524 200 HOH HOH . J 5 HOH A 193 525 201 HOH HOH . J 5 HOH A 194 526 202 HOH HOH . J 5 HOH A 195 527 203 HOH HOH . J 5 HOH A 196 528 204 HOH HOH . J 5 HOH A 197 529 205 HOH HOH . J 5 HOH A 198 530 206 HOH HOH . J 5 HOH A 199 531 207 HOH HOH . J 5 HOH A 200 532 208 HOH HOH . J 5 HOH A 201 533 209 HOH HOH . J 5 HOH A 202 534 210 HOH HOH . J 5 HOH A 203 535 211 HOH HOH . J 5 HOH A 204 536 212 HOH HOH . J 5 HOH A 205 537 213 HOH HOH . J 5 HOH A 206 538 214 HOH HOH . J 5 HOH A 207 539 215 HOH HOH . J 5 HOH A 208 540 216 HOH HOH . J 5 HOH A 209 541 217 HOH HOH . J 5 HOH A 210 542 218 HOH HOH . J 5 HOH A 211 543 219 HOH HOH . J 5 HOH A 212 544 220 HOH HOH . J 5 HOH A 213 545 221 HOH HOH . J 5 HOH A 214 546 222 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 32.62 46.909 17.654 1 65.4 ? C1 EDO 329 A 1 HETATM 2 O O1 EDO . . . F 4 33.543 47.517 18.57 1 68.42 ? O1 EDO 329 A 1 HETATM 3 C C2 EDO . . . F 4 33.153 46.93 16.219 1 65.03 ? C2 EDO 329 A 1 HETATM 4 O O2 EDO . . . F 4 33.823 45.694 15.924 1 64.13 ? O2 EDO 329 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #