data_3INH # _model_server_result.job_id vbjVetUZNtpFjUiUpEVWhQ _model_server_result.datetime_utc '2024-12-24 17:39:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3inh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3INH # _exptl.entry_id 3INH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 445.37 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5R)-2-amino-5-(4-fluoro-3-pyrimidin-5-ylphenyl)-3-methyl-5-[4-(trifluoromethoxy)phenyl]-3,5-dihydro-4H-imidazol-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.69 _cell.angle_gamma 90 _cell.entry_id 3INH _cell.length_a 73.137 _cell.length_b 104.33 _cell.length_c 49.551 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3INH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 171 A CYS 217 1_555 A SG CYS 375 A CYS 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 233 A CYS 279 1_555 A SG CYS 398 A CYS 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 285 A CYS 331 1_555 A SG CYS 335 A CYS 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C21 H15 F4 N5 O2' _chem_comp.formula_weight 445.37 _chem_comp.id 569 _chem_comp.mon_nstd_flag . _chem_comp.name (5R)-2-amino-5-(4-fluoro-3-pyrimidin-5-ylphenyl)-3-methyl-5-[4-(trifluoromethoxy)phenyl]-3,5-dihydro-4H-imidazol-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 569 sing 1 n n C1 H1 569 sing 2 n n C1 H1A 569 sing 3 n n C1 H1B 569 sing 4 n n F1 C11 569 sing 5 n n C4 N1 569 sing 6 n n N1 C2 569 sing 7 n n C2 O1 569 doub 8 n n C3 C2 569 sing 9 n n C11 F2 569 sing 10 n n N2 C4 569 doub 11 n n N2 C3 569 sing 12 n n C8 O2 569 sing 13 n n O2 C11 569 sing 14 n n C12 C3 569 sing 15 n n C3 C5 569 sing 16 n n F3 C11 569 sing 17 n n N3 C4 569 sing 18 n n N3 HN3 569 sing 19 n n N3 HN3A 569 sing 20 n n F4 C15 569 sing 21 n n N4 C19 569 doub 22 n y N4 C20 569 sing 23 n y C6 C5 569 doub 24 n y C5 C10 569 sing 25 n y C20 N5 569 doub 26 n y N5 C21 569 sing 27 n y C6 C7 569 sing 28 n y C6 H6 569 sing 29 n n C7 C8 569 doub 30 n y C7 H7 569 sing 31 n n C8 C9 569 sing 32 n y C10 C9 569 doub 33 n y C9 H9 569 sing 34 n n C10 H10 569 sing 35 n n C17 C12 569 doub 36 n y C12 C13 569 sing 37 n y C14 C13 569 doub 38 n y C13 H13 569 sing 39 n n C15 C14 569 sing 40 n y C14 H14 569 sing 41 n n C16 C15 569 doub 42 n y C18 C16 569 sing 43 n y C16 C17 569 sing 44 n y C17 H17 569 sing 45 n n C19 C18 569 sing 46 n y C18 C21 569 doub 47 n y C19 H19 569 sing 48 n n C20 H20 569 sing 49 n n C21 H21 569 sing 50 n n # _atom_sites.entry_id 3INH _atom_sites.fract_transf_matrix[1][1] 0.013673 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001122 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009585 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020249 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 569 A 1 1 1 569 569 . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 7 7 HOH HOH . C 3 HOH A 7 8 8 HOH HOH . C 3 HOH A 8 9 9 HOH HOH . C 3 HOH A 9 10 10 HOH HOH . C 3 HOH A 10 11 11 HOH HOH . C 3 HOH A 11 12 12 HOH HOH . C 3 HOH A 12 13 13 HOH HOH . C 3 HOH A 13 14 14 HOH HOH . C 3 HOH A 14 15 15 HOH HOH . C 3 HOH A 15 16 16 HOH HOH . C 3 HOH A 16 17 17 HOH HOH . C 3 HOH A 17 18 18 HOH HOH . C 3 HOH A 18 19 19 HOH HOH . C 3 HOH A 19 20 20 HOH HOH . C 3 HOH A 20 21 21 HOH HOH . C 3 HOH A 21 22 22 HOH HOH . C 3 HOH A 22 23 23 HOH HOH . C 3 HOH A 23 24 24 HOH HOH . C 3 HOH A 24 25 25 HOH HOH . C 3 HOH A 25 26 26 HOH HOH . C 3 HOH A 26 27 27 HOH HOH . C 3 HOH A 27 28 28 HOH HOH . C 3 HOH A 28 29 29 HOH HOH . C 3 HOH A 29 30 30 HOH HOH . C 3 HOH A 30 31 31 HOH HOH . C 3 HOH A 31 32 32 HOH HOH . C 3 HOH A 32 33 33 HOH HOH . C 3 HOH A 33 34 34 HOH HOH . C 3 HOH A 34 35 35 HOH HOH . C 3 HOH A 35 36 36 HOH HOH . C 3 HOH A 36 37 37 HOH HOH . C 3 HOH A 37 38 38 HOH HOH . C 3 HOH A 38 39 39 HOH HOH . C 3 HOH A 39 40 40 HOH HOH . C 3 HOH A 40 41 41 HOH HOH . C 3 HOH A 41 42 42 HOH HOH . C 3 HOH A 42 43 43 HOH HOH . C 3 HOH A 43 44 44 HOH HOH . C 3 HOH A 44 45 45 HOH HOH . C 3 HOH A 45 46 46 HOH HOH . C 3 HOH A 46 462 1 HOH HOH . C 3 HOH A 47 463 47 HOH HOH . C 3 HOH A 48 464 48 HOH HOH . C 3 HOH A 49 465 49 HOH HOH . C 3 HOH A 50 466 50 HOH HOH . C 3 HOH A 51 467 51 HOH HOH . C 3 HOH A 52 468 52 HOH HOH . C 3 HOH A 53 469 53 HOH HOH . C 3 HOH A 54 470 54 HOH HOH . C 3 HOH A 55 471 55 HOH HOH . C 3 HOH A 56 472 56 HOH HOH . C 3 HOH A 57 473 57 HOH HOH . C 3 HOH A 58 474 58 HOH HOH . C 3 HOH A 59 475 59 HOH HOH . C 3 HOH A 60 476 60 HOH HOH . C 3 HOH A 61 477 61 HOH HOH . C 3 HOH A 62 478 62 HOH HOH . C 3 HOH A 63 479 63 HOH HOH . C 3 HOH A 64 480 64 HOH HOH . C 3 HOH A 65 481 65 HOH HOH . C 3 HOH A 66 482 66 HOH HOH . C 3 HOH A 67 483 67 HOH HOH . C 3 HOH A 68 484 68 HOH HOH . C 3 HOH A 69 485 69 HOH HOH . C 3 HOH A 70 486 71 HOH HOH . C 3 HOH A 71 487 72 HOH HOH . C 3 HOH A 72 488 73 HOH HOH . C 3 HOH A 73 489 74 HOH HOH . C 3 HOH A 74 490 76 HOH HOH . C 3 HOH A 75 491 77 HOH HOH . C 3 HOH A 76 492 78 HOH HOH . C 3 HOH A 77 493 79 HOH HOH . C 3 HOH A 78 494 80 HOH HOH . C 3 HOH A 79 495 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 569 . . . B 2 16.09 -4.37 17.583 1 24.61 ? C1 569 1 A 1 HETATM 2 F F1 569 . . . B 2 18.093 -12.235 16.436 1 44.69 ? F1 569 1 A 1 HETATM 3 N N1 569 . . . B 2 15.412 -5.495 16.958 1 21.44 ? N1 569 1 A 1 HETATM 4 O O1 569 . . . B 2 14.424 -6.461 18.829 1 25.27 ? O1 569 1 A 1 HETATM 5 C C2 569 . . . B 2 14.665 -6.423 17.63 1 22.18 ? C2 569 1 A 1 HETATM 6 F F2 569 . . . B 2 17.981 -12.446 18.606 1 41.71 ? F2 569 1 A 1 HETATM 7 N N2 569 . . . B 2 14.683 -6.827 15.31 1 21.21 ? N2 569 1 A 1 HETATM 8 O O2 569 . . . B 2 16.093 -12.731 17.423 1 32.82 ? O2 569 1 A 1 HETATM 9 C C3 569 . . . B 2 14.143 -7.411 16.579 1 20.67 ? C3 569 1 A 1 HETATM 10 F F3 569 . . . B 2 17.816 -14.23 17.34 1 42.67 ? F3 569 1 A 1 HETATM 11 N N3 569 . . . B 2 16.175 -5.082 14.75 1 19.06 ? N3 569 1 A 1 HETATM 12 C C4 569 . . . B 2 15.419 -5.803 15.633 1 21.08 ? C4 569 1 A 1 HETATM 13 F F4 569 . . . B 2 8.502 -7.107 16.382 1 24.03 ? F4 569 1 A 1 HETATM 14 N N4 569 . . . B 2 9.872 -3.027 13.929 1 23.22 ? N4 569 1 A 1 HETATM 15 C C5 569 . . . B 2 14.668 -8.833 16.84 1 21.64 ? C5 569 1 A 1 HETATM 16 N N5 569 . . . B 2 8.463 -2.955 15.874 1 28.03 ? N5 569 1 A 1 HETATM 17 C C6 569 . . . B 2 14.874 -9.732 15.784 1 23.33 ? C6 569 1 A 1 HETATM 18 C C7 569 . . . B 2 15.351 -11.023 16.025 1 26.44 ? C7 569 1 A 1 HETATM 19 C C8 569 . . . B 2 15.631 -11.447 17.326 1 30.19 ? C8 569 1 A 1 HETATM 20 C C9 569 . . . B 2 15.43 -10.566 18.386 1 27.31 ? C9 569 1 A 1 HETATM 21 C C10 569 . . . B 2 14.954 -9.273 18.145 1 30.36 ? C10 569 1 A 1 HETATM 22 C C11 569 . . . B 2 17.499 -12.921 17.434 1 36.62 ? C11 569 1 A 1 HETATM 23 C C12 569 . . . B 2 12.613 -7.384 16.541 1 20.92 ? C12 569 1 A 1 HETATM 24 C C13 569 . . . B 2 11.808 -8.468 16.917 1 25.45 ? C13 569 1 A 1 HETATM 25 C C14 569 . . . B 2 10.421 -8.359 16.855 1 24.59 ? C14 569 1 A 1 HETATM 26 C C15 569 . . . B 2 9.838 -7.172 16.422 1 21.59 ? C15 569 1 A 1 HETATM 27 C C16 569 . . . B 2 10.602 -6.063 16.038 1 21.21 ? C16 569 1 A 1 HETATM 28 C C17 569 . . . B 2 11.995 -6.196 16.108 1 22.34 ? C17 569 1 A 1 HETATM 29 C C18 569 . . . B 2 10.007 -4.803 15.58 1 22.72 ? C18 569 1 A 1 HETATM 30 C C19 569 . . . B 2 10.387 -4.186 14.394 1 23.19 ? C19 569 1 A 1 HETATM 31 C C20 569 . . . B 2 8.928 -2.474 14.708 1 23.24 ? C20 569 1 A 1 HETATM 32 C C21 569 . . . B 2 9.022 -4.117 16.282 1 23.19 ? C21 569 1 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 423 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #