data_3INM # _model_server_result.job_id -L4dqNAD-5tw1CdnPe7qQA _model_server_result.datetime_utc '2024-11-30 10:34:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3inm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":522}' # _entry.id 3INM # _exptl.entry_id 3INM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3INM _cell.length_a 96.12 _cell.length_b 274.69 _cell.length_c 116.5 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3INM _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,H,I,J,K,L,M,S,T 1 1 C,N,O,P,Q,R,U 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_554 x,-y,-z-1 1 0 0 0 -1 0 0 0 -1 0 0 -116.5 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 M N N ? 5 Q N N # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3INM _atom_sites.fract_transf_matrix[1][1] 0.010404 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00364 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008584 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NDP A 1 501 501 NDP NDP . E 3 AKG A 1 511 511 AKG AKG . F 4 CA A 1 521 521 CA CA . G 5 NA A 1 522 522 NA NA . H 6 GOL A 1 531 531 GOL GOL . I 6 GOL A 1 532 532 GOL GOL . J 2 NDP B 1 501 501 NDP NDP . K 3 AKG B 1 511 511 AKG AKG . L 4 CA B 1 521 521 CA CA . M 5 NA B 1 522 522 NA NA . N 2 NDP C 1 501 501 NDP NDP . O 3 AKG C 1 511 511 AKG AKG . P 4 CA C 1 521 521 CA CA . Q 5 NA C 1 522 522 NA NA . R 6 GOL C 1 532 532 GOL GOL . S 7 HOH A 1 426 101 HOH HOH . S 7 HOH A 2 427 102 HOH HOH . S 7 HOH A 3 428 103 HOH HOH . S 7 HOH A 4 429 104 HOH HOH . S 7 HOH A 5 430 105 HOH HOH . S 7 HOH A 6 431 106 HOH HOH . S 7 HOH A 7 432 107 HOH HOH . S 7 HOH A 8 433 108 HOH HOH . S 7 HOH A 9 434 109 HOH HOH . S 7 HOH A 10 435 110 HOH HOH . S 7 HOH A 11 436 111 HOH HOH . S 7 HOH A 12 437 112 HOH HOH . S 7 HOH A 13 438 113 HOH HOH . S 7 HOH A 14 439 114 HOH HOH . S 7 HOH A 15 440 115 HOH HOH . S 7 HOH A 16 441 116 HOH HOH . S 7 HOH A 17 442 205 HOH HOH . S 7 HOH A 18 443 209 HOH HOH . S 7 HOH A 19 444 217 HOH HOH . S 7 HOH A 20 1001 1001 HOH HOH . S 7 HOH A 21 1002 1002 HOH HOH . S 7 HOH A 22 1003 1003 HOH HOH . S 7 HOH A 23 1005 1005 HOH HOH . S 7 HOH A 24 1008 1008 HOH HOH . S 7 HOH A 25 1009 1009 HOH HOH . S 7 HOH A 26 1025 1025 HOH HOH . S 7 HOH A 27 1026 1026 HOH HOH . S 7 HOH A 28 1027 1027 HOH HOH . S 7 HOH A 29 1029 1029 HOH HOH . S 7 HOH A 30 1031 1031 HOH HOH . S 7 HOH A 31 1032 1032 HOH HOH . S 7 HOH A 32 1034 1034 HOH HOH . S 7 HOH A 33 1040 1040 HOH HOH . S 7 HOH A 34 1041 1041 HOH HOH . S 7 HOH A 35 1042 1042 HOH HOH . S 7 HOH A 36 1050 1050 HOH HOH . S 7 HOH A 37 1051 1051 HOH HOH . S 7 HOH A 38 1052 1052 HOH HOH . S 7 HOH A 39 1054 1054 HOH HOH . S 7 HOH A 40 1058 1058 HOH HOH . S 7 HOH A 41 1062 1062 HOH HOH . S 7 HOH A 42 1064 1064 HOH HOH . S 7 HOH A 43 1066 1066 HOH HOH . S 7 HOH A 44 1068 1068 HOH HOH . S 7 HOH A 45 1069 1069 HOH HOH . S 7 HOH A 46 1075 1075 HOH HOH . S 7 HOH A 47 1076 1076 HOH HOH . S 7 HOH A 48 1078 1078 HOH HOH . S 7 HOH A 49 1080 1080 HOH HOH . S 7 HOH A 50 1084 1084 HOH HOH . S 7 HOH A 51 1087 1087 HOH HOH . S 7 HOH A 52 1090 1090 HOH HOH . S 7 HOH A 53 1091 1091 HOH HOH . S 7 HOH A 54 1095 1095 HOH HOH . S 7 HOH A 55 1097 1097 HOH HOH . S 7 HOH A 56 1100 1100 HOH HOH . S 7 HOH A 57 1102 1102 HOH HOH . S 7 HOH A 58 1105 1105 HOH HOH . S 7 HOH A 59 1106 1106 HOH HOH . S 7 HOH A 60 1108 1108 HOH HOH . S 7 HOH A 61 1110 1110 HOH HOH . S 7 HOH A 62 1115 1115 HOH HOH . S 7 HOH A 63 1117 1117 HOH HOH . S 7 HOH A 64 1123 1123 HOH HOH . S 7 HOH A 65 1128 1128 HOH HOH . S 7 HOH A 66 1141 1141 HOH HOH . S 7 HOH A 67 1145 1145 HOH HOH . S 7 HOH A 68 1149 1149 HOH HOH . S 7 HOH A 69 1150 1150 HOH HOH . S 7 HOH A 70 1151 1151 HOH HOH . S 7 HOH A 71 1152 1152 HOH HOH . S 7 HOH A 72 1153 1153 HOH HOH . S 7 HOH A 73 1154 1154 HOH HOH . S 7 HOH A 74 1156 1156 HOH HOH . S 7 HOH A 75 1160 1160 HOH HOH . S 7 HOH A 76 1162 1162 HOH HOH . S 7 HOH A 77 1163 1163 HOH HOH . S 7 HOH A 78 1165 1165 HOH HOH . S 7 HOH A 79 1167 1167 HOH HOH . S 7 HOH A 80 1169 1169 HOH HOH . S 7 HOH A 81 1171 1171 HOH HOH . S 7 HOH A 82 1175 1175 HOH HOH . S 7 HOH A 83 1176 1176 HOH HOH . S 7 HOH A 84 1179 1179 HOH HOH . S 7 HOH A 85 1184 1184 HOH HOH . S 7 HOH A 86 1188 1188 HOH HOH . S 7 HOH A 87 1189 1189 HOH HOH . S 7 HOH A 88 1191 1191 HOH HOH . S 7 HOH A 89 1193 1193 HOH HOH . S 7 HOH A 90 1194 1194 HOH HOH . S 7 HOH A 91 1197 1197 HOH HOH . S 7 HOH A 92 1199 1199 HOH HOH . S 7 HOH A 93 1200 1200 HOH HOH . S 7 HOH A 94 1201 1201 HOH HOH . S 7 HOH A 95 1206 1206 HOH HOH . S 7 HOH A 96 1214 1214 HOH HOH . S 7 HOH A 97 1218 1218 HOH HOH . S 7 HOH A 98 1225 1225 HOH HOH . S 7 HOH A 99 1226 1226 HOH HOH . S 7 HOH A 100 1228 1228 HOH HOH . S 7 HOH A 101 1229 1229 HOH HOH . S 7 HOH A 102 1231 1231 HOH HOH . S 7 HOH A 103 1235 1235 HOH HOH . S 7 HOH A 104 1236 1236 HOH HOH . S 7 HOH A 105 1244 1244 HOH HOH . S 7 HOH A 106 1245 1245 HOH HOH . S 7 HOH A 107 1246 1246 HOH HOH . S 7 HOH A 108 1249 1249 HOH HOH . S 7 HOH A 109 1251 1251 HOH HOH . S 7 HOH A 110 1253 1253 HOH HOH . S 7 HOH A 111 1254 1254 HOH HOH . S 7 HOH A 112 1255 1255 HOH HOH . T 7 HOH B 1 426 117 HOH HOH . T 7 HOH B 2 427 201 HOH HOH . T 7 HOH B 3 428 202 HOH HOH . T 7 HOH B 4 429 203 HOH HOH . T 7 HOH B 5 430 204 HOH HOH . T 7 HOH B 6 431 206 HOH HOH . T 7 HOH B 7 432 207 HOH HOH . T 7 HOH B 8 433 208 HOH HOH . T 7 HOH B 9 434 210 HOH HOH . T 7 HOH B 10 435 212 HOH HOH . T 7 HOH B 11 436 213 HOH HOH . T 7 HOH B 12 437 214 HOH HOH . T 7 HOH B 13 438 215 HOH HOH . T 7 HOH B 14 439 216 HOH HOH . T 7 HOH B 15 1004 1004 HOH HOH . T 7 HOH B 16 1007 1007 HOH HOH . T 7 HOH B 17 1010 1010 HOH HOH . T 7 HOH B 18 1014 1014 HOH HOH . T 7 HOH B 19 1016 1016 HOH HOH . T 7 HOH B 20 1017 1017 HOH HOH . T 7 HOH B 21 1019 1019 HOH HOH . T 7 HOH B 22 1020 1020 HOH HOH . T 7 HOH B 23 1023 1023 HOH HOH . T 7 HOH B 24 1030 1030 HOH HOH . T 7 HOH B 25 1035 1035 HOH HOH . T 7 HOH B 26 1036 1036 HOH HOH . T 7 HOH B 27 1038 1038 HOH HOH . T 7 HOH B 28 1039 1039 HOH HOH . T 7 HOH B 29 1043 1043 HOH HOH . T 7 HOH B 30 1046 1046 HOH HOH . T 7 HOH B 31 1047 1047 HOH HOH . T 7 HOH B 32 1048 1048 HOH HOH . T 7 HOH B 33 1049 1049 HOH HOH . T 7 HOH B 34 1056 1056 HOH HOH . T 7 HOH B 35 1061 1061 HOH HOH . T 7 HOH B 36 1067 1067 HOH HOH . T 7 HOH B 37 1070 1070 HOH HOH . T 7 HOH B 38 1072 1072 HOH HOH . T 7 HOH B 39 1073 1073 HOH HOH . T 7 HOH B 40 1077 1077 HOH HOH . T 7 HOH B 41 1079 1079 HOH HOH . T 7 HOH B 42 1081 1081 HOH HOH . T 7 HOH B 43 1083 1083 HOH HOH . T 7 HOH B 44 1088 1088 HOH HOH . T 7 HOH B 45 1094 1094 HOH HOH . T 7 HOH B 46 1096 1096 HOH HOH . T 7 HOH B 47 1098 1098 HOH HOH . T 7 HOH B 48 1101 1101 HOH HOH . T 7 HOH B 49 1103 1103 HOH HOH . T 7 HOH B 50 1104 1104 HOH HOH . T 7 HOH B 51 1107 1107 HOH HOH . T 7 HOH B 52 1109 1109 HOH HOH . T 7 HOH B 53 1112 1112 HOH HOH . T 7 HOH B 54 1113 1113 HOH HOH . T 7 HOH B 55 1114 1114 HOH HOH . T 7 HOH B 56 1116 1116 HOH HOH . T 7 HOH B 57 1118 1118 HOH HOH . T 7 HOH B 58 1124 1124 HOH HOH . T 7 HOH B 59 1125 1125 HOH HOH . T 7 HOH B 60 1126 1126 HOH HOH . T 7 HOH B 61 1129 1129 HOH HOH . T 7 HOH B 62 1132 1132 HOH HOH . T 7 HOH B 63 1136 1136 HOH HOH . T 7 HOH B 64 1144 1144 HOH HOH . T 7 HOH B 65 1146 1146 HOH HOH . T 7 HOH B 66 1147 1147 HOH HOH . T 7 HOH B 67 1148 1148 HOH HOH . T 7 HOH B 68 1155 1155 HOH HOH . T 7 HOH B 69 1157 1157 HOH HOH . T 7 HOH B 70 1158 1158 HOH HOH . T 7 HOH B 71 1161 1161 HOH HOH . T 7 HOH B 72 1166 1166 HOH HOH . T 7 HOH B 73 1168 1168 HOH HOH . T 7 HOH B 74 1170 1170 HOH HOH . T 7 HOH B 75 1172 1172 HOH HOH . T 7 HOH B 76 1174 1174 HOH HOH . T 7 HOH B 77 1178 1178 HOH HOH . T 7 HOH B 78 1180 1180 HOH HOH . T 7 HOH B 79 1181 1181 HOH HOH . T 7 HOH B 80 1183 1183 HOH HOH . T 7 HOH B 81 1185 1185 HOH HOH . T 7 HOH B 82 1186 1186 HOH HOH . T 7 HOH B 83 1190 1190 HOH HOH . T 7 HOH B 84 1196 1196 HOH HOH . T 7 HOH B 85 1198 1198 HOH HOH . T 7 HOH B 86 1202 1202 HOH HOH . T 7 HOH B 87 1204 1204 HOH HOH . T 7 HOH B 88 1208 1208 HOH HOH . T 7 HOH B 89 1210 1210 HOH HOH . T 7 HOH B 90 1211 1211 HOH HOH . T 7 HOH B 91 1212 1212 HOH HOH . T 7 HOH B 92 1213 1213 HOH HOH . T 7 HOH B 93 1219 1219 HOH HOH . T 7 HOH B 94 1220 1220 HOH HOH . T 7 HOH B 95 1221 1221 HOH HOH . T 7 HOH B 96 1222 1222 HOH HOH . T 7 HOH B 97 1223 1223 HOH HOH . T 7 HOH B 98 1224 1224 HOH HOH . T 7 HOH B 99 1227 1227 HOH HOH . T 7 HOH B 100 1230 1230 HOH HOH . T 7 HOH B 101 1232 1232 HOH HOH . T 7 HOH B 102 1233 1233 HOH HOH . T 7 HOH B 103 1234 1234 HOH HOH . T 7 HOH B 104 1237 1237 HOH HOH . T 7 HOH B 105 1238 1238 HOH HOH . T 7 HOH B 106 1239 1239 HOH HOH . T 7 HOH B 107 1240 1240 HOH HOH . T 7 HOH B 108 1241 1241 HOH HOH . T 7 HOH B 109 1242 1242 HOH HOH . T 7 HOH B 110 1248 1248 HOH HOH . T 7 HOH B 111 1250 1250 HOH HOH . T 7 HOH B 112 1252 1252 HOH HOH . U 7 HOH C 1 426 301 HOH HOH . U 7 HOH C 2 427 302 HOH HOH . U 7 HOH C 3 428 303 HOH HOH . U 7 HOH C 4 429 304 HOH HOH . U 7 HOH C 5 430 305 HOH HOH . U 7 HOH C 6 431 306 HOH HOH . U 7 HOH C 7 432 307 HOH HOH . U 7 HOH C 8 433 308 HOH HOH . U 7 HOH C 9 434 309 HOH HOH . U 7 HOH C 10 435 310 HOH HOH . U 7 HOH C 11 436 311 HOH HOH . U 7 HOH C 12 437 316 HOH HOH . U 7 HOH C 13 438 317 HOH HOH . U 7 HOH C 14 1006 1006 HOH HOH . U 7 HOH C 15 1011 1011 HOH HOH . U 7 HOH C 16 1012 1012 HOH HOH . U 7 HOH C 17 1013 1013 HOH HOH . U 7 HOH C 18 1015 1015 HOH HOH . U 7 HOH C 19 1018 1018 HOH HOH . U 7 HOH C 20 1021 1021 HOH HOH . U 7 HOH C 21 1022 1022 HOH HOH . U 7 HOH C 22 1024 1024 HOH HOH . U 7 HOH C 23 1028 1028 HOH HOH . U 7 HOH C 24 1033 1033 HOH HOH . U 7 HOH C 25 1037 1037 HOH HOH . U 7 HOH C 26 1044 1044 HOH HOH . U 7 HOH C 27 1045 1045 HOH HOH . U 7 HOH C 28 1053 1053 HOH HOH . U 7 HOH C 29 1055 1055 HOH HOH . U 7 HOH C 30 1057 1057 HOH HOH . U 7 HOH C 31 1059 1059 HOH HOH . U 7 HOH C 32 1060 1060 HOH HOH . U 7 HOH C 33 1063 1063 HOH HOH . U 7 HOH C 34 1065 1065 HOH HOH . U 7 HOH C 35 1071 1071 HOH HOH . U 7 HOH C 36 1074 1074 HOH HOH . U 7 HOH C 37 1082 1082 HOH HOH . U 7 HOH C 38 1085 1085 HOH HOH . U 7 HOH C 39 1086 1086 HOH HOH . U 7 HOH C 40 1089 1089 HOH HOH . U 7 HOH C 41 1092 1092 HOH HOH . U 7 HOH C 42 1093 1093 HOH HOH . U 7 HOH C 43 1099 1099 HOH HOH . U 7 HOH C 44 1111 1111 HOH HOH . U 7 HOH C 45 1119 1119 HOH HOH . U 7 HOH C 46 1120 1120 HOH HOH . U 7 HOH C 47 1121 1121 HOH HOH . U 7 HOH C 48 1122 1122 HOH HOH . U 7 HOH C 49 1127 1127 HOH HOH . U 7 HOH C 50 1130 1130 HOH HOH . U 7 HOH C 51 1131 1131 HOH HOH . U 7 HOH C 52 1133 1133 HOH HOH . U 7 HOH C 53 1134 1134 HOH HOH . U 7 HOH C 54 1135 1135 HOH HOH . U 7 HOH C 55 1137 1137 HOH HOH . U 7 HOH C 56 1138 1138 HOH HOH . U 7 HOH C 57 1139 1139 HOH HOH . U 7 HOH C 58 1140 1140 HOH HOH . U 7 HOH C 59 1142 1142 HOH HOH . U 7 HOH C 60 1143 1143 HOH HOH . U 7 HOH C 61 1159 1159 HOH HOH . U 7 HOH C 62 1164 1164 HOH HOH . U 7 HOH C 63 1173 1173 HOH HOH . U 7 HOH C 64 1177 1177 HOH HOH . U 7 HOH C 65 1182 1182 HOH HOH . U 7 HOH C 66 1187 1187 HOH HOH . U 7 HOH C 67 1192 1192 HOH HOH . U 7 HOH C 68 1195 1195 HOH HOH . U 7 HOH C 69 1203 1203 HOH HOH . U 7 HOH C 70 1205 1205 HOH HOH . U 7 HOH C 71 1207 1207 HOH HOH . U 7 HOH C 72 1209 1209 HOH HOH . U 7 HOH C 73 1215 1215 HOH HOH . U 7 HOH C 74 1216 1216 HOH HOH . U 7 HOH C 75 1217 1217 HOH HOH . U 7 HOH C 76 1243 1243 HOH HOH . U 7 HOH C 77 1247 1247 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 5 _atom_site.Cartn_x 37.041 _atom_site.Cartn_y 52.124 _atom_site.Cartn_z 9.323 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 522 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #