data_3INY # _model_server_result.job_id Qee-MMYrvUkl66TcMgDqBw _model_server_result.datetime_utc '2024-11-15 18:39:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3iny # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":293}' # _entry.id 3INY # _exptl.entry_id 3INY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.138 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-DEAZAGUANINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3INY _cell.length_a 138.748 _cell.length_b 138.748 _cell.length_c 159.366 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3INY _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H6 N4 O' _chem_comp.formula_weight 150.138 _chem_comp.id 7DG _chem_comp.mon_nstd_flag . _chem_comp.name 7-DEAZAGUANINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C8 7DG doub 1 n n N9 C4 7DG sing 2 n n C8 C7 7DG sing 3 n n C8 H8 7DG sing 4 n n C7 C5 7DG sing 5 n n C7 H71 7DG sing 6 n n C7 H72 7DG sing 7 n n C5 C6 7DG sing 8 n n C5 C4 7DG doub 9 n n C6 O6 7DG doub 10 n n C6 N1 7DG sing 11 n n N1 C2 7DG sing 12 n n N1 HN1 7DG sing 13 n n C2 N2 7DG sing 14 n n C2 N3 7DG doub 15 n n N2 HN21 7DG sing 16 n n N2 HN22 7DG sing 17 n n N3 C4 7DG sing 18 n n # _atom_sites.entry_id 3INY _atom_sites.fract_transf_matrix[1][1] 0.007207 _atom_sites.fract_transf_matrix[1][2] 0.004161 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008322 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006275 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 290 290 SO4 SO4 . C 2 SO4 A 1 291 291 SO4 SO4 . D 2 SO4 A 1 292 292 SO4 SO4 . E 3 7DG A 1 293 293 7DG DEA . F 4 HOH A 1 295 295 HOH HOH . F 4 HOH A 2 296 296 HOH HOH . F 4 HOH A 3 302 302 HOH HOH . F 4 HOH A 4 303 303 HOH HOH . F 4 HOH A 5 307 307 HOH HOH . F 4 HOH A 6 308 308 HOH HOH . F 4 HOH A 7 309 309 HOH HOH . F 4 HOH A 8 314 314 HOH HOH . F 4 HOH A 9 319 319 HOH HOH . F 4 HOH A 10 335 335 HOH HOH . F 4 HOH A 11 336 336 HOH HOH . F 4 HOH A 12 338 338 HOH HOH . F 4 HOH A 13 341 341 HOH HOH . F 4 HOH A 14 343 343 HOH HOH . F 4 HOH A 15 345 345 HOH HOH . F 4 HOH A 16 346 346 HOH HOH . F 4 HOH A 17 347 347 HOH HOH . F 4 HOH A 18 350 350 HOH HOH . F 4 HOH A 19 351 351 HOH HOH . F 4 HOH A 20 353 353 HOH HOH . F 4 HOH A 21 354 354 HOH HOH . F 4 HOH A 22 361 361 HOH HOH . F 4 HOH A 23 362 362 HOH HOH . F 4 HOH A 24 366 366 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 7DG . . . E 3 -16.821 6.213 53.944 1 27.63 ? N9 7DG 293 A 1 HETATM 2 C C8 7DG . . . E 3 -17.978 6.75 53.412 1 27.47 ? C8 7DG 293 A 1 HETATM 3 C C7 7DG . . . E 3 -17.642 7.713 52.412 1 29.43 ? C7 7DG 293 A 1 HETATM 4 C C5 7DG . . . E 3 -16.179 7.739 52.327 1 27.65 ? C5 7DG 293 A 1 HETATM 5 C C6 7DG . . . E 3 -15.201 8.498 51.511 1 22.4 ? C6 7DG 293 A 1 HETATM 6 O O6 7DG . . . E 3 -15.548 9.339 50.665 0.17 24.3 ? O6 7DG 293 A 1 HETATM 7 N N1 7DG . . . E 3 -13.913 8.206 51.796 1 25.47 ? N1 7DG 293 A 1 HETATM 8 C C2 7DG . . . E 3 -13.561 7.289 52.764 0.5 25.31 ? C2 7DG 293 A 1 HETATM 9 N N2 7DG . . . E 3 -12.279 6.993 53.029 1 27.71 ? N2 7DG 293 A 1 HETATM 10 N N3 7DG . . . E 3 -14.379 6.573 53.551 1 20.13 ? N3 7DG 293 A 1 HETATM 11 C C4 7DG . . . E 3 -15.679 6.762 53.362 1 26.65 ? C4 7DG 293 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #