data_3IO3 # _model_server_result.job_id XxSEe0M3KOxCz29upfa4dA _model_server_result.datetime_utc '2025-03-05 22:02:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3io3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":968}' # _entry.id 3IO3 # _exptl.entry_id 3IO3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3IO3 _cell.length_a 59.851 _cell.length_b 87.292 _cell.length_c 230.589 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IO3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 59.851 87.292 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 280 A CYS 280 1_555 C ZN ZN . A ZN 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc2 A SG CYS 283 A CYS 283 1_555 C ZN ZN . A ZN 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 173 n n C1 C2 GOL sing 174 n n C1 H11 GOL sing 175 n n C1 H12 GOL sing 176 n n O1 HO1 GOL sing 177 n n C2 O2 GOL sing 178 n n C2 C3 GOL sing 179 n n C2 H2 GOL sing 180 n n O2 HO2 GOL sing 181 n n C3 O3 GOL sing 182 n n C3 H31 GOL sing 183 n n C3 H32 GOL sing 184 n n O3 HO3 GOL sing 185 n n # _atom_sites.entry_id 3IO3 _atom_sites.fract_transf_matrix[1][1] 0.016708 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011456 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004337 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 590 590 ADP ADP . C 3 ZN A 1 349 1 ZN ZN . D 4 MG A 1 350 1 MG MG . E 5 GOL A 1 968 968 GOL GOL . F 5 GOL A 1 351 968 GOL GOL . G 5 GOL A 1 352 968 GOL GOL . H 6 NA A 1 353 1 NA NA . I 7 HOH A 1 354 354 HOH HOH . I 7 HOH A 2 355 355 HOH HOH . I 7 HOH A 3 356 356 HOH HOH . I 7 HOH A 4 357 357 HOH HOH . I 7 HOH A 5 358 358 HOH HOH . I 7 HOH A 6 359 359 HOH HOH . I 7 HOH A 7 360 360 HOH HOH . I 7 HOH A 8 361 361 HOH HOH . I 7 HOH A 9 362 362 HOH HOH . I 7 HOH A 10 363 363 HOH HOH . I 7 HOH A 11 364 364 HOH HOH . I 7 HOH A 12 365 365 HOH HOH . I 7 HOH A 13 366 366 HOH HOH . I 7 HOH A 14 367 367 HOH HOH . I 7 HOH A 15 368 368 HOH HOH . I 7 HOH A 16 369 369 HOH HOH . I 7 HOH A 17 370 370 HOH HOH . I 7 HOH A 18 371 371 HOH HOH . I 7 HOH A 19 372 372 HOH HOH . I 7 HOH A 20 373 373 HOH HOH . I 7 HOH A 21 374 374 HOH HOH . I 7 HOH A 22 375 375 HOH HOH . I 7 HOH A 23 376 376 HOH HOH . I 7 HOH A 24 377 377 HOH HOH . I 7 HOH A 25 378 378 HOH HOH . I 7 HOH A 26 379 379 HOH HOH . I 7 HOH A 27 380 380 HOH HOH . I 7 HOH A 28 381 381 HOH HOH . I 7 HOH A 29 382 382 HOH HOH . I 7 HOH A 30 383 383 HOH HOH . I 7 HOH A 31 384 384 HOH HOH . I 7 HOH A 32 385 385 HOH HOH . I 7 HOH A 33 386 386 HOH HOH . I 7 HOH A 34 387 387 HOH HOH . I 7 HOH A 35 388 388 HOH HOH . I 7 HOH A 36 389 389 HOH HOH . I 7 HOH A 37 390 390 HOH HOH . I 7 HOH A 38 391 391 HOH HOH . I 7 HOH A 39 392 392 HOH HOH . I 7 HOH A 40 393 393 HOH HOH . I 7 HOH A 41 394 394 HOH HOH . I 7 HOH A 42 395 395 HOH HOH . I 7 HOH A 43 396 396 HOH HOH . I 7 HOH A 44 397 397 HOH HOH . I 7 HOH A 45 398 398 HOH HOH . I 7 HOH A 46 399 399 HOH HOH . I 7 HOH A 47 400 400 HOH HOH . I 7 HOH A 48 401 401 HOH HOH . I 7 HOH A 49 402 402 HOH HOH . I 7 HOH A 50 403 403 HOH HOH . I 7 HOH A 51 404 404 HOH HOH . I 7 HOH A 52 405 405 HOH HOH . I 7 HOH A 53 406 406 HOH HOH . I 7 HOH A 54 407 407 HOH HOH . I 7 HOH A 55 408 408 HOH HOH . I 7 HOH A 56 409 409 HOH HOH . I 7 HOH A 57 410 410 HOH HOH . I 7 HOH A 58 411 6 HOH HOH . I 7 HOH A 59 412 9 HOH HOH . I 7 HOH A 60 413 10 HOH HOH . I 7 HOH A 61 414 12 HOH HOH . I 7 HOH A 62 415 13 HOH HOH . I 7 HOH A 63 416 14 HOH HOH . I 7 HOH A 64 417 15 HOH HOH . I 7 HOH A 65 418 16 HOH HOH . I 7 HOH A 66 419 19 HOH HOH . I 7 HOH A 67 420 21 HOH HOH . I 7 HOH A 68 421 22 HOH HOH . I 7 HOH A 69 422 24 HOH HOH . I 7 HOH A 70 423 26 HOH HOH . I 7 HOH A 71 424 27 HOH HOH . I 7 HOH A 72 425 28 HOH HOH . I 7 HOH A 73 426 30 HOH HOH . I 7 HOH A 74 427 31 HOH HOH . I 7 HOH A 75 428 32 HOH HOH . I 7 HOH A 76 429 33 HOH HOH . I 7 HOH A 77 430 34 HOH HOH . I 7 HOH A 78 431 35 HOH HOH . I 7 HOH A 79 432 36 HOH HOH . I 7 HOH A 80 433 37 HOH HOH . I 7 HOH A 81 434 38 HOH HOH . I 7 HOH A 82 435 40 HOH HOH . I 7 HOH A 83 436 42 HOH HOH . I 7 HOH A 84 437 43 HOH HOH . I 7 HOH A 85 438 44 HOH HOH . I 7 HOH A 86 439 49 HOH HOH . I 7 HOH A 87 440 50 HOH HOH . I 7 HOH A 88 441 51 HOH HOH . I 7 HOH A 89 442 53 HOH HOH . I 7 HOH A 90 443 54 HOH HOH . I 7 HOH A 91 444 55 HOH HOH . I 7 HOH A 92 445 58 HOH HOH . I 7 HOH A 93 446 59 HOH HOH . I 7 HOH A 94 447 60 HOH HOH . I 7 HOH A 95 448 61 HOH HOH . I 7 HOH A 96 449 67 HOH HOH . I 7 HOH A 97 450 69 HOH HOH . I 7 HOH A 98 451 75 HOH HOH . I 7 HOH A 99 452 77 HOH HOH . I 7 HOH A 100 453 78 HOH HOH . I 7 HOH A 101 454 79 HOH HOH . I 7 HOH A 102 455 81 HOH HOH . I 7 HOH A 103 456 82 HOH HOH . I 7 HOH A 104 457 83 HOH HOH . I 7 HOH A 105 458 85 HOH HOH . I 7 HOH A 106 459 86 HOH HOH . I 7 HOH A 107 460 92 HOH HOH . I 7 HOH A 108 461 93 HOH HOH . I 7 HOH A 109 462 96 HOH HOH . I 7 HOH A 110 463 98 HOH HOH . I 7 HOH A 111 464 100 HOH HOH . I 7 HOH A 112 465 101 HOH HOH . I 7 HOH A 113 466 104 HOH HOH . I 7 HOH A 114 467 111 HOH HOH . I 7 HOH A 115 468 112 HOH HOH . I 7 HOH A 116 469 114 HOH HOH . I 7 HOH A 117 470 115 HOH HOH . I 7 HOH A 118 471 121 HOH HOH . I 7 HOH A 119 472 122 HOH HOH . I 7 HOH A 120 473 124 HOH HOH . I 7 HOH A 121 474 129 HOH HOH . I 7 HOH A 122 475 132 HOH HOH . I 7 HOH A 123 476 134 HOH HOH . I 7 HOH A 124 477 136 HOH HOH . I 7 HOH A 125 478 137 HOH HOH . I 7 HOH A 126 479 140 HOH HOH . I 7 HOH A 127 480 141 HOH HOH . I 7 HOH A 128 481 143 HOH HOH . I 7 HOH A 129 482 145 HOH HOH . I 7 HOH A 130 483 146 HOH HOH . I 7 HOH A 131 484 149 HOH HOH . I 7 HOH A 132 485 150 HOH HOH . I 7 HOH A 133 486 152 HOH HOH . I 7 HOH A 134 487 153 HOH HOH . I 7 HOH A 135 488 154 HOH HOH . I 7 HOH A 136 489 155 HOH HOH . I 7 HOH A 137 490 158 HOH HOH . I 7 HOH A 138 491 165 HOH HOH . I 7 HOH A 139 492 170 HOH HOH . I 7 HOH A 140 493 178 HOH HOH . I 7 HOH A 141 494 209 HOH HOH . I 7 HOH A 142 495 307 HOH HOH . I 7 HOH A 143 496 308 HOH HOH . I 7 HOH A 144 497 309 HOH HOH . I 7 HOH A 145 498 310 HOH HOH . I 7 HOH A 146 499 311 HOH HOH . I 7 HOH A 147 500 312 HOH HOH . I 7 HOH A 148 501 313 HOH HOH . I 7 HOH A 149 502 314 HOH HOH . I 7 HOH A 150 503 315 HOH HOH . I 7 HOH A 151 504 316 HOH HOH . I 7 HOH A 152 505 317 HOH HOH . I 7 HOH A 153 506 318 HOH HOH . I 7 HOH A 154 507 319 HOH HOH . I 7 HOH A 155 508 320 HOH HOH . I 7 HOH A 156 509 321 HOH HOH . I 7 HOH A 157 510 322 HOH HOH . I 7 HOH A 158 511 323 HOH HOH . I 7 HOH A 159 512 324 HOH HOH . I 7 HOH A 160 513 325 HOH HOH . I 7 HOH A 161 514 326 HOH HOH . I 7 HOH A 162 515 327 HOH HOH . I 7 HOH A 163 516 328 HOH HOH . I 7 HOH A 164 517 329 HOH HOH . I 7 HOH A 165 518 330 HOH HOH . I 7 HOH A 166 519 331 HOH HOH . I 7 HOH A 167 520 332 HOH HOH . I 7 HOH A 168 521 333 HOH HOH . I 7 HOH A 169 522 334 HOH HOH . I 7 HOH A 170 523 335 HOH HOH . I 7 HOH A 171 524 336 HOH HOH . I 7 HOH A 172 525 337 HOH HOH . I 7 HOH A 173 526 338 HOH HOH . I 7 HOH A 174 527 339 HOH HOH . I 7 HOH A 175 528 340 HOH HOH . I 7 HOH A 176 529 341 HOH HOH . I 7 HOH A 177 530 342 HOH HOH . I 7 HOH A 178 531 343 HOH HOH . I 7 HOH A 179 532 344 HOH HOH . I 7 HOH A 180 533 345 HOH HOH . I 7 HOH A 181 534 346 HOH HOH . I 7 HOH A 182 535 347 HOH HOH . I 7 HOH A 183 536 348 HOH HOH . I 7 HOH A 184 537 349 HOH HOH . I 7 HOH A 185 538 350 HOH HOH . I 7 HOH A 186 539 351 HOH HOH . I 7 HOH A 187 540 352 HOH HOH . I 7 HOH A 188 541 353 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 5 33.813 36.257 70.621 1 42.31 ? C1 GOL 968 A 1 HETATM 2 O O1 GOL . . . E 5 33.532 36.066 69.248 1 38.81 ? O1 GOL 968 A 1 HETATM 3 C C2 GOL . . . E 5 35.289 35.95 70.899 1 43.7 ? C2 GOL 968 A 1 HETATM 4 O O2 GOL . . . E 5 36.078 37.111 70.717 1 43.54 ? O2 GOL 968 A 1 HETATM 5 C C3 GOL . . . E 5 35.471 35.385 72.31 1 45.18 ? C3 GOL 968 A 1 HETATM 6 O O3 GOL . . . E 5 35.988 36.363 73.192 1 46.56 ? O3 GOL 968 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 218 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #