data_3IO7 # _model_server_result.job_id YLvP1f6sK8k_Zi2d_OCr2w _model_server_result.datetime_utc '2025-01-02 19:34:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3io7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3IO7 # _exptl.entry_id 3IO7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details 'chemical synthesis' _entity.formula_weight 394.473 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S)-1-[6-(2-aminopyrazolo[1,5-a]pyrimidin-3-yl)pyrimidin-4-yl]-N,N-diethylpiperidine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3IO7 _cell.length_a 93.922 _cell.length_b 101.752 _cell.length_c 67.194 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IO7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 187 A GLU 1006 1_555 A N PTR 188 A PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C PTR 188 A PTR 1007 1_555 A N PTR 189 A PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C PTR 189 A PTR 1008 1_555 A N LYS 190 A LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C20 H26 N8 O' _chem_comp.formula_weight 394.473 _chem_comp.id 1P5 _chem_comp.mon_nstd_flag . _chem_comp.name (3S)-1-[6-(2-aminopyrazolo[1,5-a]pyrimidin-3-yl)pyrimidin-4-yl]-N,N-diethylpiperidine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C4 1P5 sing 1 n n N3 C6 1P5 sing 2 n n N3 C2 1P5 sing 3 n n C4 C5 1P5 sing 4 n n C6 C8 1P5 sing 5 n n C6 O7 1P5 doub 6 n n C8 C10 1P5 sing 7 n n C8 C14 1P5 sing 8 n n C10 C11 1P5 sing 9 n n C15 N13 1P5 sing 10 n n C15 C16 1P5 doub 11 n y C15 N20 1P5 sing 12 n y C17 C21 1P5 sing 13 n y C17 C16 1P5 sing 14 n y C17 N18 1P5 doub 15 n y C21 C22 1P5 doub 16 n y C21 C29 1P5 sing 17 n y C22 N23 1P5 sing 18 n y C22 N27 1P5 sing 19 n y C24 N23 1P5 doub 20 n y C24 C25 1P5 sing 21 n y C26 C25 1P5 doub 22 n y C26 N27 1P5 sing 23 n y C1 C2 1P5 sing 24 n n C11 C12 1P5 sing 25 n n C12 N13 1P5 sing 26 n n N13 C14 1P5 sing 27 n n N18 C19 1P5 sing 28 n y C19 N20 1P5 doub 29 n y N27 N28 1P5 sing 30 n y N28 C29 1P5 doub 31 n y C29 N30 1P5 sing 32 n n C4 H4 1P5 sing 33 n n C4 H4A 1P5 sing 34 n n C5 H5 1P5 sing 35 n n C5 H5A 1P5 sing 36 n n C5 H5B 1P5 sing 37 n n C8 H8 1P5 sing 38 n n C10 H10 1P5 sing 39 n n C10 H10A 1P5 sing 40 n n C24 H24 1P5 sing 41 n n C26 H26 1P5 sing 42 n n C1 H1 1P5 sing 43 n n C1 H1A 1P5 sing 44 n n C1 H1B 1P5 sing 45 n n C2 H2 1P5 sing 46 n n C2 H2A 1P5 sing 47 n n C11 H11 1P5 sing 48 n n C11 H11A 1P5 sing 49 n n C12 H12 1P5 sing 50 n n C12 H12A 1P5 sing 51 n n C14 H14 1P5 sing 52 n n C14 H14A 1P5 sing 53 n n C16 H16 1P5 sing 54 n n C19 H19 1P5 sing 55 n n C25 H25 1P5 sing 56 n n N30 HN30 1P5 sing 57 n n N30 HN3A 1P5 sing 58 n n # _atom_sites.entry_id 3IO7 _atom_sites.fract_transf_matrix[1][1] 0.010647 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009828 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014882 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1P5 A 1 1 1 1P5 1P5 . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 7 7 HOH HOH . C 3 HOH A 7 8 8 HOH HOH . C 3 HOH A 8 9 9 HOH HOH . C 3 HOH A 9 12 12 HOH HOH . C 3 HOH A 10 13 13 HOH HOH . C 3 HOH A 11 14 14 HOH HOH . C 3 HOH A 12 16 16 HOH HOH . C 3 HOH A 13 17 17 HOH HOH . C 3 HOH A 14 18 18 HOH HOH . C 3 HOH A 15 19 19 HOH HOH . C 3 HOH A 16 20 20 HOH HOH . C 3 HOH A 17 21 21 HOH HOH . C 3 HOH A 18 22 22 HOH HOH . C 3 HOH A 19 23 23 HOH HOH . C 3 HOH A 20 24 24 HOH HOH . C 3 HOH A 21 26 26 HOH HOH . C 3 HOH A 22 27 27 HOH HOH . C 3 HOH A 23 29 29 HOH HOH . C 3 HOH A 24 30 30 HOH HOH . C 3 HOH A 25 32 32 HOH HOH . C 3 HOH A 26 33 33 HOH HOH . C 3 HOH A 27 34 34 HOH HOH . C 3 HOH A 28 35 35 HOH HOH . C 3 HOH A 29 36 36 HOH HOH . C 3 HOH A 30 39 39 HOH HOH . C 3 HOH A 31 40 40 HOH HOH . C 3 HOH A 32 41 41 HOH HOH . C 3 HOH A 33 42 42 HOH HOH . C 3 HOH A 34 43 43 HOH HOH . C 3 HOH A 35 44 44 HOH HOH . C 3 HOH A 36 1131 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 1P5 . . . B 2 14.866 16.61 4.065 1 34.76 ? N3 1P5 1 A 1 HETATM 2 C C4 1P5 . . . B 2 14.551 15.664 2.98 1 34.9 ? C4 1P5 1 A 1 HETATM 3 C C5 1P5 . . . B 2 15.405 15.921 1.736 1 34.24 ? C5 1P5 1 A 1 HETATM 4 C C6 1P5 . . . B 2 15.924 16.391 4.891 1 33.34 ? C6 1P5 1 A 1 HETATM 5 C C8 1P5 . . . B 2 16.828 15.2 4.77 1 31.48 ? C8 1P5 1 A 1 HETATM 6 C C10 1P5 . . . B 2 18.28 15.633 5.034 1 30.07 ? C10 1P5 1 A 1 HETATM 7 C C15 1P5 . . . B 2 16.801 11.877 5.532 1 27.53 ? C15 1P5 1 A 1 HETATM 8 C C17 1P5 . . . B 2 15.402 10.425 4.201 1 25.86 ? C17 1P5 1 A 1 HETATM 9 C C21 1P5 . . . B 2 14.264 10.105 3.303 1 24.86 ? C21 1P5 1 A 1 HETATM 10 C C22 1P5 . . . B 2 13.251 10.94 2.788 1 23.87 ? C22 1P5 1 A 1 HETATM 11 C C24 1P5 . . . B 2 11.919 12.782 2.329 1 22.78 ? C24 1P5 1 A 1 HETATM 12 C C26 1P5 . . . B 2 11.387 10.703 1.305 1 23.42 ? C26 1P5 1 A 1 HETATM 13 C C1 1P5 . . . B 2 14.661 19.119 3.921 1 37.78 ? C1 1P5 1 A 1 HETATM 14 C C2 1P5 . . . B 2 13.979 17.786 4.259 1 35.98 ? C2 1P5 1 A 1 HETATM 15 O O7 1P5 . . . B 2 16.165 17.165 5.789 1 35.76 ? O7 1P5 1 A 1 HETATM 16 C C11 1P5 . . . B 2 18.912 14.888 6.215 1 30.56 ? C11 1P5 1 A 1 HETATM 17 C C12 1P5 . . . B 2 18.609 13.383 6.15 1 30.08 ? C12 1P5 1 A 1 HETATM 18 N N13 1P5 . . . B 2 17.154 13.094 6.132 1 28.68 ? N13 1P5 1 A 1 HETATM 19 C C14 1P5 . . . B 2 16.274 14.233 5.821 1 30.17 ? C14 1P5 1 A 1 HETATM 20 C C16 1P5 . . . B 2 15.666 11.709 4.722 1 27.26 ? C16 1P5 1 A 1 HETATM 21 N N18 1P5 . . . B 2 16.27 9.441 4.473 1 27.19 ? N18 1P5 1 A 1 HETATM 22 C C19 1P5 . . . B 2 17.317 9.633 5.238 1 27.26 ? C19 1P5 1 A 1 HETATM 23 N N20 1P5 . . . B 2 17.571 10.815 5.759 1 27.17 ? N20 1P5 1 A 1 HETATM 24 N N23 1P5 . . . B 2 12.951 12.236 2.958 1 23.69 ? N23 1P5 1 A 1 HETATM 25 C C25 1P5 . . . B 2 11.104 12.023 1.471 1 22.04 ? C25 1P5 1 A 1 HETATM 26 N N27 1P5 . . . B 2 12.467 10.168 1.957 1 23.18 ? N27 1P5 1 A 1 HETATM 27 N N28 1P5 . . . B 2 12.999 8.882 1.952 1 23.17 ? N28 1P5 1 A 1 HETATM 28 C C29 1P5 . . . B 2 14.051 8.837 2.743 1 23.18 ? C29 1P5 1 A 1 HETATM 29 N N30 1P5 . . . B 2 14.843 7.718 2.98 1 22.37 ? N30 1P5 1 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #