data_3IOC
#
_model_server_result.job_id            kO-GRMHj5faxcS688k-fGg 
_model_server_result.datetime_utc      '2025-01-10 13:44:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ioc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":302}' 
#
_entry.id    3IOC 
#
_exptl.entry_id    3IOC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              405.494 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R,3R,4S,5S)-2-(6-amino-9H-purin-9-yl)-5-[(benzyldisulfanyl)methyl]tetrahydrofuran-3,4-diol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.03 
_cell.angle_gamma         90 
_cell.entry_id            3IOC 
_cell.length_a            48.591 
_cell.length_b            71.485 
_cell.length_c            82.044 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3IOC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C17 H19 N5 O3 S2' 
_chem_comp.formula_weight    405.494 
_chem_comp.id                A5D 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R,3R,4S,5S)-2-(6-amino-9H-purin-9-yl)-5-[(benzyldisulfanyl)methyl]tetrahydrofuran-3,4-diol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 A5D doub 1 n y 
N1 C6 A5D sing 2 n y 
C2 N3 A5D sing 3 n y 
N3 C4 A5D doub 4 n y 
C4 C5 A5D sing 5 n y 
C4 N9 A5D sing 6 n y 
C5 C6 A5D doub 7 n y 
C5 N7 A5D sing 8 n y 
C6 N6 A5D sing 9 n n 
N7 C8 A5D doub 10 n y 
C8 N9 A5D sing 11 n y 
N9 CAZ A5D sing 12 n n 
OAB CAW A5D sing 13 n n 
OAC CAX A5D sing 14 n n 
CAD CAE A5D doub 15 n y 
CAD CAF A5D sing 16 n y 
CAE CAG A5D sing 17 n y 
CAF CAH A5D doub 18 n y 
CAG CAS A5D doub 19 n y 
CAH CAS A5D sing 20 n y 
CAK SAQ A5D sing 21 n n 
CAK CAS A5D sing 22 n n 
CAL SAR A5D sing 23 n n 
CAL CAY A5D sing 24 n n 
OAP CAY A5D sing 25 n n 
OAP CAZ A5D sing 26 n n 
SAQ SAR A5D sing 27 n n 
CAW CAX A5D sing 28 n n 
CAW CAY A5D sing 29 n n 
CAX CAZ A5D sing 30 n n 
C2 H2 A5D sing 31 n n 
N6 HN6 A5D sing 32 n n 
N6 HN6A A5D sing 33 n n 
C8 H8 A5D sing 34 n n 
OAB HOAB A5D sing 35 n n 
OAC HOAC A5D sing 36 n n 
CAD HAD A5D sing 37 n n 
CAE HAE A5D sing 38 n n 
CAF HAF A5D sing 39 n n 
CAG HAG A5D sing 40 n n 
CAH HAH A5D sing 41 n n 
CAK HAK A5D sing 42 n n 
CAK HAKA A5D sing 43 n n 
CAL HAL A5D sing 44 n n 
CAL HALA A5D sing 45 n n 
CAW HAW A5D sing 46 n n 
CAX HAX A5D sing 47 n n 
CAY HAY A5D sing 48 n n 
CAZ HAZ A5D sing 49 n n 
#
_atom_sites.entry_id                     3IOC 
_atom_sites.fract_transf_matrix[1][1]    0.02058 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00364 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013989 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012378 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 701 701 GOL GOL . 
D 2 GOL A 1 708 708 GOL GOL . 
E 3 A5D A 1 301 301 A5D A5D . 
F 3 A5D B 1 302 302 A5D A5D . 
G 4 HOH A 1 302 3 HOH HOH . 
G 4 HOH A 2 303 9 HOH HOH . 
G 4 HOH A 3 304 15 HOH HOH . 
G 4 HOH A 4 305 36 HOH HOH . 
G 4 HOH A 5 306 42 HOH HOH . 
G 4 HOH A 6 307 307 HOH HOH . 
G 4 HOH A 7 308 65 HOH HOH . 
G 4 HOH A 8 309 112 HOH HOH . 
G 4 HOH A 9 310 310 HOH HOH . 
G 4 HOH A 10 311 294 HOH HOH . 
G 4 HOH A 11 312 312 HOH HOH . 
G 4 HOH A 12 313 313 HOH HOH . 
G 4 HOH A 13 314 314 HOH HOH . 
G 4 HOH A 14 315 297 HOH HOH . 
G 4 HOH A 15 316 298 HOH HOH . 
G 4 HOH A 16 317 301 HOH HOH . 
G 4 HOH A 17 325 325 HOH HOH . 
G 4 HOH A 18 328 328 HOH HOH . 
G 4 HOH A 19 329 329 HOH HOH . 
G 4 HOH A 20 332 332 HOH HOH . 
G 4 HOH A 21 333 333 HOH HOH . 
G 4 HOH A 22 335 335 HOH HOH . 
G 4 HOH A 23 336 336 HOH HOH . 
G 4 HOH A 24 338 338 HOH HOH . 
G 4 HOH A 25 342 342 HOH HOH . 
G 4 HOH A 26 345 345 HOH HOH . 
G 4 HOH A 27 346 346 HOH HOH . 
G 4 HOH A 28 348 348 HOH HOH . 
G 4 HOH A 29 349 349 HOH HOH . 
G 4 HOH A 30 352 352 HOH HOH . 
G 4 HOH A 31 356 356 HOH HOH . 
G 4 HOH A 32 357 357 HOH HOH . 
G 4 HOH A 33 360 360 HOH HOH . 
G 4 HOH A 34 361 361 HOH HOH . 
G 4 HOH A 35 363 363 HOH HOH . 
G 4 HOH A 36 367 367 HOH HOH . 
G 4 HOH A 37 368 368 HOH HOH . 
G 4 HOH A 38 376 376 HOH HOH . 
G 4 HOH A 39 377 377 HOH HOH . 
G 4 HOH A 40 382 382 HOH HOH . 
G 4 HOH A 41 386 386 HOH HOH . 
G 4 HOH A 42 389 389 HOH HOH . 
G 4 HOH A 43 393 393 HOH HOH . 
G 4 HOH A 44 398 398 HOH HOH . 
G 4 HOH A 45 404 404 HOH HOH . 
G 4 HOH A 46 405 405 HOH HOH . 
G 4 HOH A 47 408 408 HOH HOH . 
G 4 HOH A 48 415 415 HOH HOH . 
G 4 HOH A 49 417 417 HOH HOH . 
G 4 HOH A 50 420 420 HOH HOH . 
G 4 HOH A 51 421 421 HOH HOH . 
G 4 HOH A 52 442 442 HOH HOH . 
G 4 HOH A 53 444 444 HOH HOH . 
G 4 HOH A 54 445 445 HOH HOH . 
G 4 HOH A 55 449 449 HOH HOH . 
G 4 HOH A 56 465 465 HOH HOH . 
G 4 HOH A 57 476 476 HOH HOH . 
G 4 HOH A 58 477 477 HOH HOH . 
G 4 HOH A 59 478 478 HOH HOH . 
G 4 HOH A 60 482 482 HOH HOH . 
G 4 HOH A 61 485 485 HOH HOH . 
G 4 HOH A 62 496 496 HOH HOH . 
G 4 HOH A 63 502 502 HOH HOH . 
G 4 HOH A 64 504 504 HOH HOH . 
G 4 HOH A 65 505 505 HOH HOH . 
G 4 HOH A 66 510 510 HOH HOH . 
G 4 HOH A 67 512 512 HOH HOH . 
G 4 HOH A 68 518 518 HOH HOH . 
G 4 HOH A 69 521 521 HOH HOH . 
G 4 HOH A 70 531 531 HOH HOH . 
G 4 HOH A 71 532 532 HOH HOH . 
G 4 HOH A 72 538 538 HOH HOH . 
G 4 HOH A 73 546 546 HOH HOH . 
G 4 HOH A 74 547 547 HOH HOH . 
G 4 HOH A 75 550 550 HOH HOH . 
G 4 HOH A 76 554 554 HOH HOH . 
G 4 HOH A 77 555 555 HOH HOH . 
G 4 HOH A 78 577 577 HOH HOH . 
G 4 HOH A 79 583 583 HOH HOH . 
G 4 HOH A 80 589 589 HOH HOH . 
G 4 HOH A 81 590 590 HOH HOH . 
G 4 HOH A 82 604 604 HOH HOH . 
G 4 HOH A 83 609 609 HOH HOH . 
G 4 HOH A 84 611 611 HOH HOH . 
G 4 HOH A 85 621 621 HOH HOH . 
G 4 HOH A 86 623 623 HOH HOH . 
G 4 HOH A 87 624 624 HOH HOH . 
G 4 HOH A 88 626 626 HOH HOH . 
G 4 HOH A 89 628 628 HOH HOH . 
G 4 HOH A 90 629 629 HOH HOH . 
G 4 HOH A 91 631 631 HOH HOH . 
G 4 HOH A 92 632 632 HOH HOH . 
G 4 HOH A 93 633 633 HOH HOH . 
G 4 HOH A 94 634 634 HOH HOH . 
G 4 HOH A 95 635 635 HOH HOH . 
G 4 HOH A 96 636 636 HOH HOH . 
G 4 HOH A 97 637 637 HOH HOH . 
G 4 HOH A 98 638 638 HOH HOH . 
G 4 HOH A 99 639 639 HOH HOH . 
G 4 HOH A 100 640 640 HOH HOH . 
G 4 HOH A 101 647 647 HOH HOH . 
G 4 HOH A 102 648 648 HOH HOH . 
G 4 HOH A 103 651 651 HOH HOH . 
H 4 HOH B 1 301 17 HOH HOH . 
H 4 HOH B 2 303 303 HOH HOH . 
H 4 HOH B 3 304 304 HOH HOH . 
H 4 HOH B 4 305 305 HOH HOH . 
H 4 HOH B 5 306 306 HOH HOH . 
H 4 HOH B 6 307 51 HOH HOH . 
H 4 HOH B 7 308 105 HOH HOH . 
H 4 HOH B 8 309 289 HOH HOH . 
H 4 HOH B 9 310 290 HOH HOH . 
H 4 HOH B 10 311 311 HOH HOH . 
H 4 HOH B 11 312 291 HOH HOH . 
H 4 HOH B 12 313 296 HOH HOH . 
H 4 HOH B 13 314 300 HOH HOH . 
H 4 HOH B 14 319 319 HOH HOH . 
H 4 HOH B 15 320 320 HOH HOH . 
H 4 HOH B 16 322 322 HOH HOH . 
H 4 HOH B 17 324 324 HOH HOH . 
H 4 HOH B 18 326 326 HOH HOH . 
H 4 HOH B 19 327 327 HOH HOH . 
H 4 HOH B 20 331 331 HOH HOH . 
H 4 HOH B 21 334 334 HOH HOH . 
H 4 HOH B 22 337 337 HOH HOH . 
H 4 HOH B 23 340 340 HOH HOH . 
H 4 HOH B 24 351 351 HOH HOH . 
H 4 HOH B 25 359 359 HOH HOH . 
H 4 HOH B 26 362 362 HOH HOH . 
H 4 HOH B 27 364 364 HOH HOH . 
H 4 HOH B 28 365 365 HOH HOH . 
H 4 HOH B 29 371 371 HOH HOH . 
H 4 HOH B 30 372 372 HOH HOH . 
H 4 HOH B 31 374 374 HOH HOH . 
H 4 HOH B 32 375 375 HOH HOH . 
H 4 HOH B 33 381 381 HOH HOH . 
H 4 HOH B 34 385 385 HOH HOH . 
H 4 HOH B 35 390 390 HOH HOH . 
H 4 HOH B 36 391 391 HOH HOH . 
H 4 HOH B 37 392 392 HOH HOH . 
H 4 HOH B 38 396 396 HOH HOH . 
H 4 HOH B 39 399 399 HOH HOH . 
H 4 HOH B 40 400 400 HOH HOH . 
H 4 HOH B 41 414 414 HOH HOH . 
H 4 HOH B 42 416 416 HOH HOH . 
H 4 HOH B 43 418 418 HOH HOH . 
H 4 HOH B 44 422 422 HOH HOH . 
H 4 HOH B 45 423 423 HOH HOH . 
H 4 HOH B 46 424 424 HOH HOH . 
H 4 HOH B 47 430 430 HOH HOH . 
H 4 HOH B 48 431 431 HOH HOH . 
H 4 HOH B 49 439 439 HOH HOH . 
H 4 HOH B 50 443 443 HOH HOH . 
H 4 HOH B 51 446 446 HOH HOH . 
H 4 HOH B 52 447 447 HOH HOH . 
H 4 HOH B 53 448 448 HOH HOH . 
H 4 HOH B 54 450 450 HOH HOH . 
H 4 HOH B 55 460 460 HOH HOH . 
H 4 HOH B 56 463 463 HOH HOH . 
H 4 HOH B 57 464 464 HOH HOH . 
H 4 HOH B 58 466 466 HOH HOH . 
H 4 HOH B 59 469 469 HOH HOH . 
H 4 HOH B 60 470 470 HOH HOH . 
H 4 HOH B 61 472 472 HOH HOH . 
H 4 HOH B 62 473 473 HOH HOH . 
H 4 HOH B 63 483 483 HOH HOH . 
H 4 HOH B 64 494 494 HOH HOH . 
H 4 HOH B 65 497 497 HOH HOH . 
H 4 HOH B 66 498 498 HOH HOH . 
H 4 HOH B 67 499 499 HOH HOH . 
H 4 HOH B 68 500 500 HOH HOH . 
H 4 HOH B 69 503 503 HOH HOH . 
H 4 HOH B 70 508 508 HOH HOH . 
H 4 HOH B 71 511 511 HOH HOH . 
H 4 HOH B 72 515 515 HOH HOH . 
H 4 HOH B 73 517 517 HOH HOH . 
H 4 HOH B 74 524 524 HOH HOH . 
H 4 HOH B 75 533 533 HOH HOH . 
H 4 HOH B 76 545 545 HOH HOH . 
H 4 HOH B 77 558 558 HOH HOH . 
H 4 HOH B 78 566 566 HOH HOH . 
H 4 HOH B 79 567 567 HOH HOH . 
H 4 HOH B 80 573 573 HOH HOH . 
H 4 HOH B 81 574 574 HOH HOH . 
H 4 HOH B 82 591 591 HOH HOH . 
H 4 HOH B 83 596 596 HOH HOH . 
H 4 HOH B 84 599 599 HOH HOH . 
H 4 HOH B 85 605 605 HOH HOH . 
H 4 HOH B 86 610 610 HOH HOH . 
H 4 HOH B 87 614 614 HOH HOH . 
H 4 HOH B 88 616 616 HOH HOH . 
H 4 HOH B 89 619 619 HOH HOH . 
H 4 HOH B 90 641 641 HOH HOH . 
H 4 HOH B 91 642 642 HOH HOH . 
H 4 HOH B 92 643 643 HOH HOH . 
H 4 HOH B 93 644 644 HOH HOH . 
H 4 HOH B 94 645 645 HOH HOH . 
H 4 HOH B 95 646 646 HOH HOH . 
H 4 HOH B 96 649 649 HOH HOH . 
H 4 HOH B 97 650 650 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 A5D . . . F 3 -1.292 -9.094 41.871 1 50.39 ? N1 A5D 302 B 1 
HETATM 2 C C2 A5D . . . F 3 -1.446 -8.157 40.918 1 50.09 ? C2 A5D 302 B 1 
HETATM 3 N N3 A5D . . . F 3 -1.103 -8.414 39.672 1 48.55 ? N3 A5D 302 B 1 
HETATM 4 C C4 A5D . . . F 3 -0.58 -9.621 39.361 1 45.88 ? C4 A5D 302 B 1 
HETATM 5 C C5 A5D . . . F 3 -0.401 -10.621 40.297 1 46.98 ? C5 A5D 302 B 1 
HETATM 6 C C6 A5D . . . F 3 -0.788 -10.319 41.613 1 48.3 ? C6 A5D 302 B 1 
HETATM 7 N N6 A5D . . . F 3 -0.702 -11.188 42.632 1 48.71 ? N6 A5D 302 B 1 
HETATM 8 N N7 A5D . . . F 3 0.126 -11.685 39.652 1 51.02 ? N7 A5D 302 B 1 
HETATM 9 C C8 A5D . . . F 3 0.296 -11.359 38.377 1 46.92 ? C8 A5D 302 B 1 
HETATM 10 N N9 A5D . . . F 3 -0.152 -10.095 38.228 1 45.65 ? N9 A5D 302 B 1 
HETATM 11 O OAB A5D . . . F 3 0.578 -7.48 34.668 1 34.95 ? OAB A5D 302 B 1 
HETATM 12 O OAC A5D . . . F 3 2.086 -8.236 36.992 1 42.53 ? OAC A5D 302 B 1 
HETATM 13 C CAD A5D . . . F 3 3.215 -9.664 27.562 1 53.11 ? CAD A5D 302 B 1 
HETATM 14 C CAE A5D . . . F 3 1.949 -10.029 28.033 1 56.84 ? CAE A5D 302 B 1 
HETATM 15 C CAF A5D . . . F 3 4.226 -9.353 28.472 1 52.13 ? CAF A5D 302 B 1 
HETATM 16 C CAG A5D . . . F 3 1.708 -10.067 29.405 1 53.09 ? CAG A5D 302 B 1 
HETATM 17 C CAH A5D . . . F 3 3.99 -9.406 29.841 1 53.21 ? CAH A5D 302 B 1 
HETATM 18 C CAK A5D . . . F 3 2.455 -9.831 31.824 1 56.52 ? CAK A5D 302 B 1 
HETATM 19 C CAL A5D . . . F 3 -0.688 -10.627 33.94 1 63.5 ? CAL A5D 302 B 1 
HETATM 20 O OAP A5D . . . F 3 -0.848 -10.167 36.201 1 49.73 ? OAP A5D 302 B 1 
HETATM 21 S SAQ A5D . . . F 3 1.608 -11.424 32.116 1 65.93 ? SAQ A5D 302 B 1 
HETATM 22 S SAR A5D . . . F 3 0.899 -11.457 34.034 1 71.31 ? SAR A5D 302 B 1 
HETATM 23 C CAS A5D . . . F 3 2.729 -9.76 30.315 1 55.98 ? CAS A5D 302 B 1 
HETATM 24 C CAW A5D . . . F 3 0.776 -8.871 34.93 1 45.53 ? CAW A5D 302 B 1 
HETATM 25 C CAX A5D . . . F 3 1.209 -9.186 36.37 1 47.19 ? CAX A5D 302 B 1 
HETATM 26 C CAY A5D . . . F 3 -0.639 -9.508 34.924 1 54.91 ? CAY A5D 302 B 1 
HETATM 27 C CAZ A5D . . . F 3 -0.179 -9.284 37.059 1 47.89 ? CAZ A5D 302 B 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           27 
#