data_3IOJ # _model_server_result.job_id JAB-f4dmvwV0KzpegCj1Qw _model_server_result.datetime_utc '2024-11-26 12:54:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ioj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":475}' # _entry.id 3IOJ # _exptl.entry_id 3IOJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 404.161 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "URIDINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3IOJ _cell.length_a 52.45 _cell.length_b 77.536 _cell.length_c 153.605 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IOJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 155 A ASP 211 1_555 C MN MN . A MN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc2 A OD1 ASP 157 A ASP 213 1_555 C MN MN . A MN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc3 A OD2 ASP 157 A ASP 213 1_555 C MN MN . A MN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc4 C MN MN . A MN 406 1_555 D O3B UDP . A UDP 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc5 C MN MN . A MN 406 1_555 D O1A UDP . A UDP 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc6 C MN MN . A MN 406 1_555 M O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc7 B OD2 ASP 155 B ASP 211 1_555 I MN MN . B MN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc8 B OD1 ASP 157 B ASP 213 1_555 I MN MN . B MN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc9 B OD2 ASP 157 B ASP 213 1_555 I MN MN . B MN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc10 I MN MN . B MN 406 1_555 N O HOH . B HOH 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc11 I MN MN . B MN 406 1_555 J O3B UDP . B UDP 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc12 I MN MN . B MN 406 1_555 J O1A UDP . B UDP 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? # _chem_comp.formula 'C9 H14 N2 O12 P2' _chem_comp.formula_weight 404.161 _chem_comp.id UDP _chem_comp.mon_nstd_flag . _chem_comp.name "URIDINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 UDP sing 375 n n N1 C6 UDP sing 376 n n N1 C1' UDP sing 377 n n C2 N3 UDP sing 378 n n C2 O2 UDP doub 379 n n N3 C4 UDP sing 380 n n N3 HN3 UDP sing 381 n n C4 C5 UDP sing 382 n n C4 O4 UDP doub 383 n n C5 C6 UDP doub 384 n n C5 H5 UDP sing 385 n n C6 H6 UDP sing 386 n n C1' C2' UDP sing 387 n n C1' O4' UDP sing 388 n n C1' H1' UDP sing 389 n n C2' O2' UDP sing 390 n n C2' C3' UDP sing 391 n n C2' H2' UDP sing 392 n n O2' HO2' UDP sing 393 n n C3' C4' UDP sing 394 n n C3' O3' UDP sing 395 n n C3' H3' UDP sing 396 n n C4' O4' UDP sing 397 n n C4' C5' UDP sing 398 n n C4' H4' UDP sing 399 n n O3' HO3' UDP sing 400 n n C5' O5' UDP sing 401 n n C5' "H5'1" UDP sing 402 n n C5' "H5'2" UDP sing 403 n n O5' PA UDP sing 404 n n PA O1A UDP doub 405 n n PA O2A UDP sing 406 n n PA O3A UDP sing 407 n n O2A HOA2 UDP sing 408 n n O3A PB UDP sing 409 n n PB O1B UDP doub 410 n n PB O2B UDP sing 411 n n PB O3B UDP sing 412 n n O2B HOB2 UDP sing 413 n n O3B HOB3 UDP sing 414 n n # _atom_sites.entry_id 3IOJ _atom_sites.fract_transf_matrix[1][1] 0.019066 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012897 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00651 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 406 406 MN MN . D 3 UDP A 1 475 475 UDP UDP . E 4 GOL A 1 3968 3968 GOL GOL . F 5 SO4 A 1 1 1 SO4 SO4 . G 5 SO4 A 1 2 2 SO4 SO4 . H 5 SO4 A 1 3 3 SO4 SO4 . I 2 MN B 1 406 406 MN MN . J 3 UDP B 1 475 475 UDP UDP . K 4 GOL B 1 3968 3968 GOL GOL . L 5 SO4 B 1 4 4 SO4 SO4 . M 6 HOH A 1 6 6 HOH HOH . M 6 HOH A 2 9 9 HOH HOH . M 6 HOH A 3 10 10 HOH HOH . M 6 HOH A 4 11 11 HOH HOH . M 6 HOH A 5 12 12 HOH HOH . M 6 HOH A 6 15 15 HOH HOH . M 6 HOH A 7 17 17 HOH HOH . M 6 HOH A 8 19 19 HOH HOH . M 6 HOH A 9 20 20 HOH HOH . M 6 HOH A 10 21 21 HOH HOH . M 6 HOH A 11 24 24 HOH HOH . M 6 HOH A 12 25 25 HOH HOH . M 6 HOH A 13 26 26 HOH HOH . M 6 HOH A 14 27 27 HOH HOH . M 6 HOH A 15 30 30 HOH HOH . M 6 HOH A 16 34 34 HOH HOH . M 6 HOH A 17 37 37 HOH HOH . M 6 HOH A 18 38 38 HOH HOH . M 6 HOH A 19 40 40 HOH HOH . M 6 HOH A 20 42 42 HOH HOH . M 6 HOH A 21 44 44 HOH HOH . M 6 HOH A 22 45 45 HOH HOH . M 6 HOH A 23 49 49 HOH HOH . M 6 HOH A 24 50 50 HOH HOH . M 6 HOH A 25 51 51 HOH HOH . M 6 HOH A 26 55 55 HOH HOH . M 6 HOH A 27 355 355 HOH HOH . M 6 HOH A 28 356 356 HOH HOH . M 6 HOH A 29 357 1 HOH HOH . M 6 HOH A 30 358 358 HOH HOH . M 6 HOH A 31 359 359 HOH HOH . M 6 HOH A 32 360 360 HOH HOH . M 6 HOH A 33 361 361 HOH HOH . M 6 HOH A 34 362 62 HOH HOH . M 6 HOH A 35 363 363 HOH HOH . M 6 HOH A 36 364 64 HOH HOH . M 6 HOH A 37 365 68 HOH HOH . M 6 HOH A 38 366 366 HOH HOH . M 6 HOH A 39 367 69 HOH HOH . M 6 HOH A 40 368 368 HOH HOH . M 6 HOH A 41 369 70 HOH HOH . M 6 HOH A 42 370 71 HOH HOH . M 6 HOH A 43 371 75 HOH HOH . M 6 HOH A 44 372 76 HOH HOH . M 6 HOH A 45 373 80 HOH HOH . M 6 HOH A 46 374 82 HOH HOH . M 6 HOH A 47 375 375 HOH HOH . M 6 HOH A 48 376 83 HOH HOH . M 6 HOH A 49 377 85 HOH HOH . M 6 HOH A 50 378 86 HOH HOH . M 6 HOH A 51 379 90 HOH HOH . M 6 HOH A 52 380 380 HOH HOH . M 6 HOH A 53 381 91 HOH HOH . M 6 HOH A 54 382 93 HOH HOH . M 6 HOH A 55 383 383 HOH HOH . M 6 HOH A 56 384 384 HOH HOH . M 6 HOH A 57 385 94 HOH HOH . M 6 HOH A 58 386 386 HOH HOH . M 6 HOH A 59 387 98 HOH HOH . M 6 HOH A 60 388 101 HOH HOH . M 6 HOH A 61 389 102 HOH HOH . M 6 HOH A 62 390 107 HOH HOH . M 6 HOH A 63 391 108 HOH HOH . M 6 HOH A 64 392 114 HOH HOH . M 6 HOH A 65 393 115 HOH HOH . M 6 HOH A 66 394 116 HOH HOH . M 6 HOH A 67 395 117 HOH HOH . M 6 HOH A 68 396 396 HOH HOH . M 6 HOH A 69 397 118 HOH HOH . M 6 HOH A 70 398 121 HOH HOH . M 6 HOH A 71 399 124 HOH HOH . M 6 HOH A 72 400 126 HOH HOH . M 6 HOH A 73 401 401 HOH HOH . M 6 HOH A 74 402 402 HOH HOH . M 6 HOH A 75 403 403 HOH HOH . M 6 HOH A 76 404 127 HOH HOH . M 6 HOH A 77 405 128 HOH HOH . M 6 HOH A 78 407 130 HOH HOH . M 6 HOH A 79 408 131 HOH HOH . M 6 HOH A 80 409 409 HOH HOH . M 6 HOH A 81 410 132 HOH HOH . M 6 HOH A 82 411 411 HOH HOH . M 6 HOH A 83 412 139 HOH HOH . M 6 HOH A 84 413 140 HOH HOH . M 6 HOH A 85 414 141 HOH HOH . M 6 HOH A 86 415 415 HOH HOH . M 6 HOH A 87 416 144 HOH HOH . M 6 HOH A 88 417 417 HOH HOH . M 6 HOH A 89 418 418 HOH HOH . M 6 HOH A 90 419 145 HOH HOH . M 6 HOH A 91 420 420 HOH HOH . M 6 HOH A 92 421 150 HOH HOH . M 6 HOH A 93 422 154 HOH HOH . M 6 HOH A 94 423 157 HOH HOH . M 6 HOH A 95 424 160 HOH HOH . M 6 HOH A 96 425 163 HOH HOH . M 6 HOH A 97 426 426 HOH HOH . M 6 HOH A 98 427 427 HOH HOH . M 6 HOH A 99 428 164 HOH HOH . M 6 HOH A 100 429 169 HOH HOH . M 6 HOH A 101 430 172 HOH HOH . M 6 HOH A 102 431 431 HOH HOH . M 6 HOH A 103 432 173 HOH HOH . M 6 HOH A 104 433 174 HOH HOH . M 6 HOH A 105 434 434 HOH HOH . M 6 HOH A 106 435 176 HOH HOH . M 6 HOH A 107 436 178 HOH HOH . M 6 HOH A 108 437 179 HOH HOH . M 6 HOH A 109 438 180 HOH HOH . M 6 HOH A 110 439 439 HOH HOH . M 6 HOH A 111 440 440 HOH HOH . M 6 HOH A 112 441 441 HOH HOH . M 6 HOH A 113 442 442 HOH HOH . M 6 HOH A 114 443 443 HOH HOH . M 6 HOH A 115 444 444 HOH HOH . M 6 HOH A 116 445 445 HOH HOH . M 6 HOH A 117 446 446 HOH HOH . M 6 HOH A 118 447 447 HOH HOH . M 6 HOH A 119 448 448 HOH HOH . M 6 HOH A 120 449 449 HOH HOH . M 6 HOH A 121 450 450 HOH HOH . M 6 HOH A 122 451 451 HOH HOH . M 6 HOH A 123 452 452 HOH HOH . M 6 HOH A 124 453 453 HOH HOH . M 6 HOH A 125 454 454 HOH HOH . M 6 HOH A 126 455 455 HOH HOH . M 6 HOH A 127 456 181 HOH HOH . M 6 HOH A 128 457 457 HOH HOH . M 6 HOH A 129 458 458 HOH HOH . M 6 HOH A 130 459 459 HOH HOH . M 6 HOH A 131 460 460 HOH HOH . M 6 HOH A 132 461 461 HOH HOH . M 6 HOH A 133 462 462 HOH HOH . M 6 HOH A 134 463 182 HOH HOH . M 6 HOH A 135 464 183 HOH HOH . M 6 HOH A 136 465 184 HOH HOH . M 6 HOH A 137 466 185 HOH HOH . M 6 HOH A 138 467 186 HOH HOH . M 6 HOH A 139 468 188 HOH HOH . M 6 HOH A 140 469 189 HOH HOH . M 6 HOH A 141 470 190 HOH HOH . M 6 HOH A 142 471 192 HOH HOH . M 6 HOH A 143 472 194 HOH HOH . M 6 HOH A 144 473 197 HOH HOH . M 6 HOH A 145 474 200 HOH HOH . M 6 HOH A 146 476 202 HOH HOH . M 6 HOH A 147 477 204 HOH HOH . M 6 HOH A 148 478 478 HOH HOH . M 6 HOH A 149 479 205 HOH HOH . M 6 HOH A 150 480 480 HOH HOH . M 6 HOH A 151 481 206 HOH HOH . M 6 HOH A 152 482 207 HOH HOH . M 6 HOH A 153 483 213 HOH HOH . M 6 HOH A 154 484 217 HOH HOH . M 6 HOH A 155 485 485 HOH HOH . M 6 HOH A 156 486 486 HOH HOH . M 6 HOH A 157 487 219 HOH HOH . M 6 HOH A 158 488 488 HOH HOH . M 6 HOH A 159 489 220 HOH HOH . M 6 HOH A 160 490 221 HOH HOH . M 6 HOH A 161 491 491 HOH HOH . M 6 HOH A 162 492 492 HOH HOH . M 6 HOH A 163 493 226 HOH HOH . M 6 HOH A 164 494 227 HOH HOH . M 6 HOH A 165 495 495 HOH HOH . M 6 HOH A 166 496 496 HOH HOH . M 6 HOH A 167 497 229 HOH HOH . M 6 HOH A 168 498 232 HOH HOH . M 6 HOH A 169 499 233 HOH HOH . M 6 HOH A 170 500 235 HOH HOH . M 6 HOH A 171 501 501 HOH HOH . M 6 HOH A 172 502 502 HOH HOH . M 6 HOH A 173 503 236 HOH HOH . M 6 HOH A 174 504 237 HOH HOH . M 6 HOH A 175 505 505 HOH HOH . M 6 HOH A 176 506 238 HOH HOH . M 6 HOH A 177 507 242 HOH HOH . M 6 HOH A 178 508 243 HOH HOH . M 6 HOH A 179 509 244 HOH HOH . M 6 HOH A 180 510 510 HOH HOH . M 6 HOH A 181 511 245 HOH HOH . M 6 HOH A 182 512 246 HOH HOH . M 6 HOH A 183 513 247 HOH HOH . M 6 HOH A 184 514 514 HOH HOH . M 6 HOH A 185 515 249 HOH HOH . M 6 HOH A 186 516 516 HOH HOH . M 6 HOH A 187 517 250 HOH HOH . M 6 HOH A 188 518 253 HOH HOH . M 6 HOH A 189 519 519 HOH HOH . M 6 HOH A 190 520 256 HOH HOH . M 6 HOH A 191 521 521 HOH HOH . M 6 HOH A 192 522 257 HOH HOH . M 6 HOH A 193 523 523 HOH HOH . M 6 HOH A 194 524 524 HOH HOH . M 6 HOH A 195 525 258 HOH HOH . M 6 HOH A 196 526 526 HOH HOH . M 6 HOH A 197 527 259 HOH HOH . M 6 HOH A 198 528 260 HOH HOH . M 6 HOH A 199 529 529 HOH HOH . M 6 HOH A 200 530 263 HOH HOH . M 6 HOH A 201 531 265 HOH HOH . M 6 HOH A 202 532 266 HOH HOH . M 6 HOH A 203 533 269 HOH HOH . M 6 HOH A 204 534 270 HOH HOH . M 6 HOH A 205 535 278 HOH HOH . M 6 HOH A 206 536 536 HOH HOH . M 6 HOH A 207 537 283 HOH HOH . M 6 HOH A 208 538 538 HOH HOH . M 6 HOH A 209 539 539 HOH HOH . M 6 HOH A 210 540 540 HOH HOH . M 6 HOH A 211 541 285 HOH HOH . M 6 HOH A 212 542 286 HOH HOH . M 6 HOH A 213 543 543 HOH HOH . M 6 HOH A 214 544 287 HOH HOH . M 6 HOH A 215 545 545 HOH HOH . M 6 HOH A 216 546 291 HOH HOH . M 6 HOH A 217 547 547 HOH HOH . M 6 HOH A 218 548 292 HOH HOH . M 6 HOH A 219 549 293 HOH HOH . M 6 HOH A 220 550 550 HOH HOH . M 6 HOH A 221 551 551 HOH HOH . M 6 HOH A 222 552 296 HOH HOH . M 6 HOH A 223 553 553 HOH HOH . M 6 HOH A 224 554 554 HOH HOH . M 6 HOH A 225 555 555 HOH HOH . M 6 HOH A 226 556 297 HOH HOH . M 6 HOH A 227 557 298 HOH HOH . M 6 HOH A 228 558 558 HOH HOH . M 6 HOH A 229 559 299 HOH HOH . M 6 HOH A 230 560 301 HOH HOH . M 6 HOH A 231 561 302 HOH HOH . M 6 HOH A 232 562 303 HOH HOH . M 6 HOH A 233 563 304 HOH HOH . M 6 HOH A 234 564 305 HOH HOH . M 6 HOH A 235 565 306 HOH HOH . M 6 HOH A 236 566 314 HOH HOH . M 6 HOH A 237 567 323 HOH HOH . M 6 HOH A 238 568 325 HOH HOH . M 6 HOH A 239 569 326 HOH HOH . M 6 HOH A 240 570 327 HOH HOH . M 6 HOH A 241 571 328 HOH HOH . M 6 HOH A 242 572 331 HOH HOH . M 6 HOH A 243 573 332 HOH HOH . M 6 HOH A 244 574 338 HOH HOH . M 6 HOH A 245 575 341 HOH HOH . M 6 HOH A 246 576 346 HOH HOH . M 6 HOH A 247 577 347 HOH HOH . M 6 HOH A 248 578 348 HOH HOH . M 6 HOH A 249 579 349 HOH HOH . M 6 HOH A 250 580 351 HOH HOH . N 6 HOH B 1 2 2 HOH HOH . N 6 HOH B 2 3 3 HOH HOH . N 6 HOH B 3 5 5 HOH HOH . N 6 HOH B 4 7 7 HOH HOH . N 6 HOH B 5 8 8 HOH HOH . N 6 HOH B 6 13 13 HOH HOH . N 6 HOH B 7 14 14 HOH HOH . N 6 HOH B 8 16 16 HOH HOH . N 6 HOH B 9 18 18 HOH HOH . N 6 HOH B 10 22 22 HOH HOH . N 6 HOH B 11 23 23 HOH HOH . N 6 HOH B 12 28 28 HOH HOH . N 6 HOH B 13 29 29 HOH HOH . N 6 HOH B 14 31 31 HOH HOH . N 6 HOH B 15 32 32 HOH HOH . N 6 HOH B 16 33 33 HOH HOH . N 6 HOH B 17 35 35 HOH HOH . N 6 HOH B 18 36 36 HOH HOH . N 6 HOH B 19 39 39 HOH HOH . N 6 HOH B 20 41 41 HOH HOH . N 6 HOH B 21 43 43 HOH HOH . N 6 HOH B 22 46 46 HOH HOH . N 6 HOH B 23 47 47 HOH HOH . N 6 HOH B 24 48 48 HOH HOH . N 6 HOH B 25 52 52 HOH HOH . N 6 HOH B 26 53 53 HOH HOH . N 6 HOH B 27 54 54 HOH HOH . N 6 HOH B 28 56 56 HOH HOH . N 6 HOH B 29 355 4 HOH HOH . N 6 HOH B 30 356 57 HOH HOH . N 6 HOH B 31 357 357 HOH HOH . N 6 HOH B 32 358 58 HOH HOH . N 6 HOH B 33 359 59 HOH HOH . N 6 HOH B 34 360 60 HOH HOH . N 6 HOH B 35 361 61 HOH HOH . N 6 HOH B 36 362 362 HOH HOH . N 6 HOH B 37 363 63 HOH HOH . N 6 HOH B 38 364 65 HOH HOH . N 6 HOH B 39 365 365 HOH HOH . N 6 HOH B 40 366 66 HOH HOH . N 6 HOH B 41 367 367 HOH HOH . N 6 HOH B 42 368 67 HOH HOH . N 6 HOH B 43 369 369 HOH HOH . N 6 HOH B 44 370 370 HOH HOH . N 6 HOH B 45 371 371 HOH HOH . N 6 HOH B 46 372 72 HOH HOH . N 6 HOH B 47 373 373 HOH HOH . N 6 HOH B 48 374 374 HOH HOH . N 6 HOH B 49 375 73 HOH HOH . N 6 HOH B 50 376 376 HOH HOH . N 6 HOH B 51 377 377 HOH HOH . N 6 HOH B 52 378 378 HOH HOH . N 6 HOH B 53 379 379 HOH HOH . N 6 HOH B 54 380 74 HOH HOH . N 6 HOH B 55 381 381 HOH HOH . N 6 HOH B 56 382 77 HOH HOH . N 6 HOH B 57 383 78 HOH HOH . N 6 HOH B 58 384 79 HOH HOH . N 6 HOH B 59 385 385 HOH HOH . N 6 HOH B 60 386 81 HOH HOH . N 6 HOH B 61 387 387 HOH HOH . N 6 HOH B 62 388 388 HOH HOH . N 6 HOH B 63 389 389 HOH HOH . N 6 HOH B 64 390 390 HOH HOH . N 6 HOH B 65 391 84 HOH HOH . N 6 HOH B 66 392 392 HOH HOH . N 6 HOH B 67 393 393 HOH HOH . N 6 HOH B 68 394 87 HOH HOH . N 6 HOH B 69 395 395 HOH HOH . N 6 HOH B 70 396 88 HOH HOH . N 6 HOH B 71 397 397 HOH HOH . N 6 HOH B 72 398 89 HOH HOH . N 6 HOH B 73 399 399 HOH HOH . N 6 HOH B 74 400 92 HOH HOH . N 6 HOH B 75 401 95 HOH HOH . N 6 HOH B 76 402 96 HOH HOH . N 6 HOH B 77 403 97 HOH HOH . N 6 HOH B 78 404 99 HOH HOH . N 6 HOH B 79 405 100 HOH HOH . N 6 HOH B 80 407 407 HOH HOH . N 6 HOH B 81 408 408 HOH HOH . N 6 HOH B 82 409 103 HOH HOH . N 6 HOH B 83 410 410 HOH HOH . N 6 HOH B 84 411 104 HOH HOH . N 6 HOH B 85 412 412 HOH HOH . N 6 HOH B 86 413 105 HOH HOH . N 6 HOH B 87 414 106 HOH HOH . N 6 HOH B 88 415 109 HOH HOH . N 6 HOH B 89 416 416 HOH HOH . N 6 HOH B 90 417 110 HOH HOH . N 6 HOH B 91 418 111 HOH HOH . N 6 HOH B 92 419 419 HOH HOH . N 6 HOH B 93 420 112 HOH HOH . N 6 HOH B 94 421 421 HOH HOH . N 6 HOH B 95 422 422 HOH HOH . N 6 HOH B 96 423 113 HOH HOH . N 6 HOH B 97 424 424 HOH HOH . N 6 HOH B 98 425 119 HOH HOH . N 6 HOH B 99 426 120 HOH HOH . N 6 HOH B 100 427 122 HOH HOH . N 6 HOH B 101 428 123 HOH HOH . N 6 HOH B 102 429 429 HOH HOH . N 6 HOH B 103 430 430 HOH HOH . N 6 HOH B 104 431 125 HOH HOH . N 6 HOH B 105 432 432 HOH HOH . N 6 HOH B 106 433 129 HOH HOH . N 6 HOH B 107 434 134 HOH HOH . N 6 HOH B 108 435 435 HOH HOH . N 6 HOH B 109 436 436 HOH HOH . N 6 HOH B 110 437 135 HOH HOH . N 6 HOH B 111 438 136 HOH HOH . N 6 HOH B 112 439 137 HOH HOH . N 6 HOH B 113 440 138 HOH HOH . N 6 HOH B 114 441 142 HOH HOH . N 6 HOH B 115 442 143 HOH HOH . N 6 HOH B 116 443 146 HOH HOH . N 6 HOH B 117 444 147 HOH HOH . N 6 HOH B 118 445 148 HOH HOH . N 6 HOH B 119 446 149 HOH HOH . N 6 HOH B 120 447 152 HOH HOH . N 6 HOH B 121 448 153 HOH HOH . N 6 HOH B 122 449 155 HOH HOH . N 6 HOH B 123 450 156 HOH HOH . N 6 HOH B 124 451 158 HOH HOH . N 6 HOH B 125 452 159 HOH HOH . N 6 HOH B 126 453 161 HOH HOH . N 6 HOH B 127 454 162 HOH HOH . N 6 HOH B 128 455 165 HOH HOH . N 6 HOH B 129 456 456 HOH HOH . N 6 HOH B 130 457 166 HOH HOH . N 6 HOH B 131 458 167 HOH HOH . N 6 HOH B 132 459 168 HOH HOH . N 6 HOH B 133 460 170 HOH HOH . N 6 HOH B 134 461 171 HOH HOH . N 6 HOH B 135 462 175 HOH HOH . N 6 HOH B 136 463 463 HOH HOH . N 6 HOH B 137 464 464 HOH HOH . N 6 HOH B 138 465 465 HOH HOH . N 6 HOH B 139 466 466 HOH HOH . N 6 HOH B 140 467 467 HOH HOH . N 6 HOH B 141 468 468 HOH HOH . N 6 HOH B 142 469 469 HOH HOH . N 6 HOH B 143 470 470 HOH HOH . N 6 HOH B 144 471 471 HOH HOH . N 6 HOH B 145 472 472 HOH HOH . N 6 HOH B 146 473 473 HOH HOH . N 6 HOH B 147 474 474 HOH HOH . N 6 HOH B 148 476 476 HOH HOH . N 6 HOH B 149 477 177 HOH HOH . N 6 HOH B 150 478 187 HOH HOH . N 6 HOH B 151 479 479 HOH HOH . N 6 HOH B 152 480 191 HOH HOH . N 6 HOH B 153 481 481 HOH HOH . N 6 HOH B 154 482 482 HOH HOH . N 6 HOH B 155 483 193 HOH HOH . N 6 HOH B 156 484 195 HOH HOH . N 6 HOH B 157 485 196 HOH HOH . N 6 HOH B 158 486 198 HOH HOH . N 6 HOH B 159 487 199 HOH HOH . N 6 HOH B 160 488 201 HOH HOH . N 6 HOH B 161 489 489 HOH HOH . N 6 HOH B 162 490 490 HOH HOH . N 6 HOH B 163 491 203 HOH HOH . N 6 HOH B 164 492 208 HOH HOH . N 6 HOH B 165 493 493 HOH HOH . N 6 HOH B 166 494 209 HOH HOH . N 6 HOH B 167 495 210 HOH HOH . N 6 HOH B 168 496 211 HOH HOH . N 6 HOH B 169 497 497 HOH HOH . N 6 HOH B 170 498 498 HOH HOH . N 6 HOH B 171 499 499 HOH HOH . N 6 HOH B 172 500 500 HOH HOH . N 6 HOH B 173 501 212 HOH HOH . N 6 HOH B 174 502 214 HOH HOH . N 6 HOH B 175 503 503 HOH HOH . N 6 HOH B 176 504 504 HOH HOH . N 6 HOH B 177 505 215 HOH HOH . N 6 HOH B 178 506 506 HOH HOH . N 6 HOH B 179 507 507 HOH HOH . N 6 HOH B 180 508 508 HOH HOH . N 6 HOH B 181 509 509 HOH HOH . N 6 HOH B 182 510 216 HOH HOH . N 6 HOH B 183 511 218 HOH HOH . N 6 HOH B 184 512 222 HOH HOH . N 6 HOH B 185 513 513 HOH HOH . N 6 HOH B 186 514 223 HOH HOH . N 6 HOH B 187 515 224 HOH HOH . N 6 HOH B 188 516 225 HOH HOH . N 6 HOH B 189 517 228 HOH HOH . N 6 HOH B 190 518 518 HOH HOH . N 6 HOH B 191 519 230 HOH HOH . N 6 HOH B 192 520 231 HOH HOH . N 6 HOH B 193 521 234 HOH HOH . N 6 HOH B 194 522 239 HOH HOH . N 6 HOH B 195 523 240 HOH HOH . N 6 HOH B 196 524 241 HOH HOH . N 6 HOH B 197 525 525 HOH HOH . N 6 HOH B 198 526 248 HOH HOH . N 6 HOH B 199 527 527 HOH HOH . N 6 HOH B 200 528 528 HOH HOH . N 6 HOH B 201 529 251 HOH HOH . N 6 HOH B 202 530 530 HOH HOH . N 6 HOH B 203 531 531 HOH HOH . N 6 HOH B 204 532 532 HOH HOH . N 6 HOH B 205 533 533 HOH HOH . N 6 HOH B 206 534 534 HOH HOH . N 6 HOH B 207 535 535 HOH HOH . N 6 HOH B 208 536 254 HOH HOH . N 6 HOH B 209 537 537 HOH HOH . N 6 HOH B 210 538 255 HOH HOH . N 6 HOH B 211 539 261 HOH HOH . N 6 HOH B 212 540 262 HOH HOH . N 6 HOH B 213 541 541 HOH HOH . N 6 HOH B 214 542 542 HOH HOH . N 6 HOH B 215 543 264 HOH HOH . N 6 HOH B 216 544 544 HOH HOH . N 6 HOH B 217 545 267 HOH HOH . N 6 HOH B 218 546 546 HOH HOH . N 6 HOH B 219 547 268 HOH HOH . N 6 HOH B 220 548 548 HOH HOH . N 6 HOH B 221 549 549 HOH HOH . N 6 HOH B 222 550 271 HOH HOH . N 6 HOH B 223 551 272 HOH HOH . N 6 HOH B 224 552 552 HOH HOH . N 6 HOH B 225 553 273 HOH HOH . N 6 HOH B 226 554 274 HOH HOH . N 6 HOH B 227 555 275 HOH HOH . N 6 HOH B 228 556 556 HOH HOH . N 6 HOH B 229 557 557 HOH HOH . N 6 HOH B 230 558 276 HOH HOH . N 6 HOH B 231 559 559 HOH HOH . N 6 HOH B 232 560 277 HOH HOH . N 6 HOH B 233 561 279 HOH HOH . N 6 HOH B 234 562 281 HOH HOH . N 6 HOH B 235 563 282 HOH HOH . N 6 HOH B 236 564 284 HOH HOH . N 6 HOH B 237 565 288 HOH HOH . N 6 HOH B 238 566 289 HOH HOH . N 6 HOH B 239 567 290 HOH HOH . N 6 HOH B 240 568 294 HOH HOH . N 6 HOH B 241 569 295 HOH HOH . N 6 HOH B 242 570 300 HOH HOH . N 6 HOH B 243 571 307 HOH HOH . N 6 HOH B 244 572 308 HOH HOH . N 6 HOH B 245 573 309 HOH HOH . N 6 HOH B 246 574 310 HOH HOH . N 6 HOH B 247 575 311 HOH HOH . N 6 HOH B 248 576 312 HOH HOH . N 6 HOH B 249 577 313 HOH HOH . N 6 HOH B 250 578 315 HOH HOH . N 6 HOH B 251 579 316 HOH HOH . N 6 HOH B 252 580 317 HOH HOH . N 6 HOH B 253 581 318 HOH HOH . N 6 HOH B 254 582 319 HOH HOH . N 6 HOH B 255 583 320 HOH HOH . N 6 HOH B 256 584 321 HOH HOH . N 6 HOH B 257 585 322 HOH HOH . N 6 HOH B 258 586 324 HOH HOH . N 6 HOH B 259 587 329 HOH HOH . N 6 HOH B 260 588 330 HOH HOH . N 6 HOH B 261 589 334 HOH HOH . N 6 HOH B 262 590 336 HOH HOH . N 6 HOH B 263 591 337 HOH HOH . N 6 HOH B 264 592 339 HOH HOH . N 6 HOH B 265 593 340 HOH HOH . N 6 HOH B 266 594 342 HOH HOH . N 6 HOH B 267 595 343 HOH HOH . N 6 HOH B 268 596 344 HOH HOH . N 6 HOH B 269 597 345 HOH HOH . N 6 HOH B 270 598 350 HOH HOH . N 6 HOH B 271 599 352 HOH HOH . N 6 HOH B 272 600 354 HOH HOH . N 6 HOH B 273 601 406 HOH HOH . N 6 HOH B 274 602 475 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 UDP . . . D 3 16.362 -33.758 -14.165 1 23.11 ? N1 UDP 475 A 1 HETATM 2 C C2 UDP . . . D 3 17.539 -34.006 -13.477 1 23.76 ? C2 UDP 475 A 1 HETATM 3 N N3 UDP . . . D 3 18.051 -35.287 -13.38 1 23.48 ? N3 UDP 475 A 1 HETATM 4 C C4 UDP . . . D 3 17.381 -36.343 -13.976 1 26.9 ? C4 UDP 475 A 1 HETATM 5 C C5 UDP . . . D 3 16.189 -36.094 -14.676 1 23.49 ? C5 UDP 475 A 1 HETATM 6 C C6 UDP . . . D 3 15.651 -34.797 -14.705 1 23.36 ? C6 UDP 475 A 1 HETATM 7 O O2 UDP . . . D 3 18.133 -33.071 -12.944 1 22.78 ? O2 UDP 475 A 1 HETATM 8 O O4 UDP . . . D 3 17.859 -37.493 -13.884 1 27.08 ? O4 UDP 475 A 1 HETATM 9 C C1' UDP . . . D 3 15.855 -32.363 -14.21 1 23.1 ? C1' UDP 475 A 1 HETATM 10 C C2' UDP . . . D 3 16.733 -31.524 -15.107 1 21.96 ? C2' UDP 475 A 1 HETATM 11 O O2' UDP . . . D 3 16.751 -30.18 -14.644 1 23.12 ? O2' UDP 475 A 1 HETATM 12 C C3' UDP . . . D 3 15.976 -31.554 -16.406 1 22.85 ? C3' UDP 475 A 1 HETATM 13 C C4' UDP . . . D 3 14.529 -31.561 -15.934 1 24.05 ? C4' UDP 475 A 1 HETATM 14 O O4' UDP . . . D 3 14.537 -32.335 -14.75 1 23.68 ? O4' UDP 475 A 1 HETATM 15 O O3' UDP . . . D 3 16.319 -30.421 -17.167 1 23.46 ? O3' UDP 475 A 1 HETATM 16 C C5' UDP . . . D 3 13.526 -32.099 -16.963 1 23.35 ? C5' UDP 475 A 1 HETATM 17 O O5' UDP . . . D 3 14.048 -33.284 -17.523 1 19.61 ? O5' UDP 475 A 1 HETATM 18 P PA UDP . . . D 3 14.53 -33.352 -19.036 1 24.59 ? PA UDP 475 A 1 HETATM 19 O O1A UDP . . . D 3 15.364 -32.166 -19.34 1 24.47 ? O1A UDP 475 A 1 HETATM 20 O O2A UDP . . . D 3 15.25 -34.625 -19.319 1 27.65 ? O2A UDP 475 A 1 HETATM 21 O O3A UDP . . . D 3 13.112 -33.292 -19.821 1 21.1 ? O3A UDP 475 A 1 HETATM 22 P PB UDP . . . D 3 12.997 -33.001 -21.389 1 27.32 ? PB UDP 475 A 1 HETATM 23 O O1B UDP . . . D 3 11.539 -33.086 -21.663 1 29.55 ? O1B UDP 475 A 1 HETATM 24 O O2B UDP . . . D 3 13.805 -33.969 -22.174 1 28.27 ? O2B UDP 475 A 1 HETATM 25 O O3B UDP . . . D 3 13.455 -31.635 -21.746 1 23.41 ? O3B UDP 475 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 25 #