data_3IOL
#
_model_server_result.job_id            Ez2vvOBU3EJehXsTG-YBoA 
_model_server_result.datetime_utc      '2024-11-05 05:40:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3iol 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1}' 
#
_entry.id    3IOL 
#
_exptl.entry_id    3IOL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              498.628 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'decyl 4-O-alpha-D-glucopyranosyl-1-thio-beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3IOL 
_cell.length_a            35.67 
_cell.length_b            42.67 
_cell.length_c            95.09 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3IOL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 27 A CYS 46 1_555 A SG CYS 52 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
disulf ? disulf2 A SG CYS 43 A CYS 62 1_555 A SG CYS 85 A CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
disulf ? disulf3 A SG CYS 66 A CYS 85 1_555 A SG CYS 107 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? 
#
_chem_comp.formula           'C22 H42 O10 S' 
_chem_comp.formula_weight    498.628 
_chem_comp.id                10M 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'decyl 4-O-alpha-D-glucopyranosyl-1-thio-beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     '(2R,3R,4S,5S,6R)-2-((2R,3S,4R,5R,6S)-6-Decylsulfanyl-4,5-dihydroxy-2-hydroxymethyl-tetrahydro-pyran-3-yloxy)-6-hydroxymethyl-tetrahydro-pyran-3,4,5-triol, n-Decyl-beta-D-thiomaltoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O10 C22 10M sing 1 n n 
C22 C21 10M sing 2 n n 
C22 C11 10M sing 3 n n 
C21 O9 10M sing 4 n n 
C21 C14 10M sing 5 n n 
C14 O3 10M sing 6 n n 
C14 C12 10M sing 7 n n 
O3 C15 10M sing 8 n n 
C15 C20 10M sing 9 n n 
C15 O4 10M sing 10 n n 
C20 O8 10M sing 11 n n 
C20 C19 10M sing 12 n n 
C19 O7 10M sing 13 n n 
C19 C18 10M sing 14 n n 
C18 O6 10M sing 15 n n 
C18 C16 10M sing 16 n n 
C16 C17 10M sing 17 n n 
C16 O4 10M sing 18 n n 
C17 O5 10M sing 19 n n 
C12 C13 10M sing 20 n n 
C12 O1 10M sing 21 n n 
C13 O2 10M sing 22 n n 
O1 C11 10M sing 23 n n 
C11 S 10M sing 24 n n 
S C10 10M sing 25 n n 
C10 C9 10M sing 26 n n 
C9 C8 10M sing 27 n n 
C8 C7 10M sing 28 n n 
C7 C6 10M sing 29 n n 
C6 C5 10M sing 30 n n 
C5 C4 10M sing 31 n n 
C4 C3 10M sing 32 n n 
C3 C2 10M sing 33 n n 
C2 C1 10M sing 34 n n 
O10 HO10 10M sing 35 n n 
C22 H22 10M sing 36 n n 
C21 H21 10M sing 37 n n 
O9 HO9 10M sing 38 n n 
C14 H14 10M sing 39 n n 
C15 H15 10M sing 40 n n 
C20 H20 10M sing 41 n n 
O8 HO8 10M sing 42 n n 
C19 H19 10M sing 43 n n 
O7 HO7 10M sing 44 n n 
C18 H18 10M sing 45 n n 
O6 HO6 10M sing 46 n n 
C16 H16 10M sing 47 n n 
C17 H17 10M sing 48 n n 
C17 H17A 10M sing 49 n n 
O5 HO5 10M sing 50 n n 
C12 H12 10M sing 51 n n 
C13 H13 10M sing 52 n n 
C13 H13A 10M sing 53 n n 
O2 HO2 10M sing 54 n n 
C11 H11 10M sing 55 n n 
C10 H10 10M sing 56 n n 
C10 H10A 10M sing 57 n n 
C9 H9 10M sing 58 n n 
C9 H9A 10M sing 59 n n 
C8 H8 10M sing 60 n n 
C8 H8A 10M sing 61 n n 
C7 H7 10M sing 62 n n 
C7 H7A 10M sing 63 n n 
C6 H6 10M sing 64 n n 
C6 H6A 10M sing 65 n n 
C5 H5 10M sing 66 n n 
C5 H5A 10M sing 67 n n 
C4 H4 10M sing 68 n n 
C4 H4A 10M sing 69 n n 
C3 H3 10M sing 70 n n 
C3 H3A 10M sing 71 n n 
C2 H2 10M sing 72 n n 
C2 H2A 10M sing 73 n n 
C1 H1 10M sing 74 n n 
C1 H1A 10M sing 75 n n 
C1 H1B 10M sing 76 n n 
#
_atom_sites.entry_id                     3IOL 
_atom_sites.fract_transf_matrix[1][1]    0.028035 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023436 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010516 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 10M A 1 1 1 10M DET . 
D 4 HOH A 1 2 2 HOH HOH . 
D 4 HOH A 2 3 3 HOH HOH . 
D 4 HOH A 3 4 4 HOH HOH . 
D 4 HOH A 4 5 5 HOH HOH . 
D 4 HOH A 5 6 6 HOH HOH . 
D 4 HOH A 6 7 7 HOH HOH . 
D 4 HOH A 7 8 8 HOH HOH . 
D 4 HOH A 8 9 9 HOH HOH . 
D 4 HOH A 9 11 11 HOH HOH . 
D 4 HOH A 10 12 12 HOH HOH . 
D 4 HOH A 11 13 13 HOH HOH . 
D 4 HOH A 12 14 14 HOH HOH . 
D 4 HOH A 13 17 17 HOH HOH . 
D 4 HOH A 14 18 18 HOH HOH . 
D 4 HOH A 15 19 19 HOH HOH . 
D 4 HOH A 16 146 1 HOH HOH . 
D 4 HOH A 17 147 20 HOH HOH . 
D 4 HOH A 18 148 21 HOH HOH . 
D 4 HOH A 19 149 22 HOH HOH . 
D 4 HOH A 20 150 23 HOH HOH . 
D 4 HOH A 21 151 24 HOH HOH . 
D 4 HOH A 22 152 25 HOH HOH . 
D 4 HOH A 23 153 26 HOH HOH . 
D 4 HOH A 24 154 27 HOH HOH . 
D 4 HOH A 25 155 29 HOH HOH . 
D 4 HOH A 26 156 30 HOH HOH . 
D 4 HOH A 27 157 31 HOH HOH . 
D 4 HOH A 28 158 32 HOH HOH . 
D 4 HOH A 29 159 33 HOH HOH . 
D 4 HOH A 30 160 34 HOH HOH . 
D 4 HOH A 31 161 35 HOH HOH . 
D 4 HOH A 32 162 36 HOH HOH . 
D 4 HOH A 33 163 38 HOH HOH . 
D 4 HOH A 34 164 40 HOH HOH . 
D 4 HOH A 35 165 41 HOH HOH . 
D 4 HOH A 36 166 42 HOH HOH . 
D 4 HOH A 37 167 43 HOH HOH . 
D 4 HOH A 38 168 44 HOH HOH . 
D 4 HOH A 39 169 45 HOH HOH . 
D 4 HOH A 40 170 47 HOH HOH . 
D 4 HOH A 41 171 48 HOH HOH . 
D 4 HOH A 42 172 50 HOH HOH . 
D 4 HOH A 43 173 51 HOH HOH . 
D 4 HOH A 44 174 52 HOH HOH . 
D 4 HOH A 45 175 53 HOH HOH . 
D 4 HOH A 46 176 54 HOH HOH . 
D 4 HOH A 47 177 55 HOH HOH . 
D 4 HOH A 48 178 56 HOH HOH . 
D 4 HOH A 49 179 57 HOH HOH . 
D 4 HOH A 50 180 58 HOH HOH . 
D 4 HOH A 51 181 59 HOH HOH . 
D 4 HOH A 52 182 60 HOH HOH . 
D 4 HOH A 53 183 62 HOH HOH . 
D 4 HOH A 54 184 63 HOH HOH . 
D 4 HOH A 55 185 64 HOH HOH . 
D 4 HOH A 56 186 65 HOH HOH . 
D 4 HOH A 57 187 66 HOH HOH . 
D 4 HOH A 58 188 70 HOH HOH . 
D 4 HOH A 59 189 71 HOH HOH . 
D 4 HOH A 60 190 72 HOH HOH . 
D 4 HOH A 61 191 73 HOH HOH . 
E 4 HOH B 1 38 10 HOH HOH . 
E 4 HOH B 2 39 39 HOH HOH . 
E 4 HOH B 3 40 16 HOH HOH . 
E 4 HOH B 4 41 28 HOH HOH . 
E 4 HOH B 5 42 37 HOH HOH . 
E 4 HOH B 6 43 15 HOH HOH . 
E 4 HOH B 7 46 46 HOH HOH . 
E 4 HOH B 8 49 49 HOH HOH . 
E 4 HOH B 9 61 61 HOH HOH . 
E 4 HOH B 10 67 67 HOH HOH . 
E 4 HOH B 11 68 68 HOH HOH . 
E 4 HOH B 12 69 69 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O10 10M . . . C 3 -10.581 -26.856 0.856 0 65.12 ? O10 10M 1 A 1 
HETATM 2 C C22 10M . . . C 3 -11.389 -25.681 0.726 0 65.32 ? C22 10M 1 A 1 
HETATM 3 C C21 10M . . . C 3 -12.786 -26.074 0.259 0 68.26 ? C21 10M 1 A 1 
HETATM 4 O O9 10M . . . C 3 -13.456 -26.787 1.304 0 67.95 ? O9 10M 1 A 1 
HETATM 5 C C14 10M . . . C 3 -13.601 -24.844 -0.121 0 69.94 ? C14 10M 1 A 1 
HETATM 6 O O3 10M . . . C 3 -14.808 -25.253 -0.761 0 74.42 ? O3 10M 1 A 1 
HETATM 7 C C15 10M . . . C 3 -15.742 -25.798 0.169 0 79.26 ? C15 10M 1 A 1 
HETATM 8 C C20 10M . . . C 3 -17.116 -25.886 -0.484 0 80.71 ? C20 10M 1 A 1 
HETATM 9 O O8 10M . . . C 3 -17.028 -26.671 -1.678 0 80.67 ? O8 10M 1 A 1 
HETATM 10 C C19 10M . . . C 3 -17.649 -24.5 -0.825 0 81.98 ? C19 10M 1 A 1 
HETATM 11 O O7 10M . . . C 3 -19.021 -24.6 -1.222 0 81.11 ? O7 10M 1 A 1 
HETATM 12 C C18 10M . . . C 3 -17.534 -23.561 0.369 0 82.78 ? C18 10M 1 A 1 
HETATM 13 O O6 10M . . . C 3 -17.827 -22.222 -0.046 0 82.86 ? O6 10M 1 A 1 
HETATM 14 C C16 10M . . . C 3 -16.134 -23.611 0.971 0 83.28 ? C16 10M 1 A 1 
HETATM 15 C C17 10M . . . C 3 -16.04 -22.73 2.211 0 83.93 ? C17 10M 1 A 1 
HETATM 16 O O5 10M . . . C 3 -14.663 -22.512 2.537 0 84.15 ? O5 10M 1 A 1 
HETATM 17 O O4 10M . . . C 3 -15.815 -24.957 1.318 0 81.29 ? O4 10M 1 A 1 
HETATM 18 C C12 10M . . . C 3 -12.814 -23.934 -1.056 0 68.28 ? C12 10M 1 A 1 
HETATM 19 C C13 10M . . . C 3 -13.599 -22.668 -1.375 0 67.8 ? C13 10M 1 A 1 
HETATM 20 O O2 10M . . . C 3 -12.878 -21.888 -2.336 0 66.24 ? O2 10M 1 A 1 
HETATM 21 O O1 10M . . . C 3 -11.574 -23.583 -0.445 0 64.96 ? O1 10M 1 A 1 
HETATM 22 C C11 10M . . . C 3 -10.734 -24.721 -0.26 1 56.86 ? C11 10M 1 A 1 
HETATM 23 S S 10M . . . C 3 -9.171 -24.202 0.375 1 59.3 ? S 10M 1 A 1 
HETATM 24 C C10 10M . . . C 3 -8.252 -25.611 0.898 1 56.63 ? C10 10M 1 A 1 
HETATM 25 C C9 10M . . . C 3 -7.295 -25.209 2.014 1 54.95 ? C9 10M 1 A 1 
HETATM 26 C C8 10M . . . C 3 -5.846 -25.412 1.591 1 51.82 ? C8 10M 1 A 1 
HETATM 27 C C7 10M . . . C 3 -5.464 -24.451 0.471 1 49.78 ? C7 10M 1 A 1 
HETATM 28 C C6 10M . . . C 3 -3.967 -24.167 0.482 1 48.33 ? C6 10M 1 A 1 
HETATM 29 C C5 10M . . . C 3 -3.166 -25.447 0.28 1 47.39 ? C5 10M 1 A 1 
HETATM 30 C C4 10M . . . C 3 -2.685 -25.569 -1.161 1 45.9 ? C4 10M 1 A 1 
HETATM 31 C C3 10M . . . C 3 -1.4 -26.384 -1.241 1 44.03 ? C3 10M 1 A 1 
HETATM 32 C C2 10M . . . C 3 -1.402 -27.288 -2.468 1 42.37 ? C2 10M 1 A 1 
HETATM 33 C C1 10M . . . C 3 -0.624 -26.661 -3.605 1 41.91 ? C1 10M 1 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          17 
_model_server_stats.element_count           33 
#