data_3ION
#
_model_server_result.job_id            KFMDuXNWY_YG9Mwma0E4WQ 
_model_server_result.datetime_utc      '2024-11-17 19:30:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ion 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1}' 
#
_entry.id    3ION 
#
_exptl.entry_id    3ION 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              481.546 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-(5-{[(2S)-2-amino-3-phenylpropyl]oxy}pyridin-3-yl)-8,9-dimethoxybenzo[c][2,7]naphthyridin-4-amine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3ION 
_cell.length_a            123.368 
_cell.length_b            123.368 
_cell.length_c            47.265 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ION 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C28 H27 N5 O3' 
_chem_comp.formula_weight    481.546 
_chem_comp.id                8H1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-(5-{[(2S)-2-amino-3-phenylpropyl]oxy}pyridin-3-yl)-8,9-dimethoxybenzo[c][2,7]naphthyridin-4-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 8H1 sing 1 n n 
N1 C7 8H1 doub 2 n y 
N1 C8 8H1 sing 3 n y 
O1 C2 8H1 sing 4 n n 
C2 C3 8H1 doub 5 n y 
C2 C13 8H1 sing 6 n y 
N2 C10 8H1 doub 7 n y 
N2 C11 8H1 sing 8 n y 
O2 C13 8H1 sing 9 n n 
O2 C14 8H1 sing 10 n n 
C3 C4 8H1 sing 11 n y 
N3 C8 8H1 sing 12 n n 
O3 C17 8H1 sing 13 n n 
O3 C20 8H1 sing 14 n n 
C4 C5 8H1 sing 15 n y 
C4 C11 8H1 doub 16 n y 
N4 C18 8H1 doub 17 n y 
N4 C19 8H1 sing 18 n y 
C5 C6 8H1 doub 19 n y 
C5 C9 8H1 sing 20 n y 
N5 C21 8H1 sing 21 n n 
C6 C7 8H1 sing 22 n y 
C7 C15 8H1 sing 23 n y 
C8 C9 8H1 doub 24 n y 
C9 C10 8H1 sing 25 n y 
C11 C12 8H1 sing 26 n y 
C12 C13 8H1 doub 27 n y 
C15 C16 8H1 sing 28 n y 
C15 C19 8H1 doub 29 n y 
C16 C17 8H1 doub 30 n y 
C17 C18 8H1 sing 31 n y 
C20 C21 8H1 sing 32 n n 
C21 C22 8H1 sing 33 n n 
C22 C23 8H1 sing 34 n n 
C23 C24 8H1 doub 35 n y 
C23 C28 8H1 sing 36 n y 
C24 C25 8H1 sing 37 n y 
C25 C26 8H1 doub 38 n y 
C26 C27 8H1 sing 39 n y 
C27 C28 8H1 doub 40 n y 
C1 H1 8H1 sing 41 n n 
C1 H1A 8H1 sing 42 n n 
C1 H1B 8H1 sing 43 n n 
C3 H3 8H1 sing 44 n n 
N3 HN3 8H1 sing 45 n n 
N3 HN3A 8H1 sing 46 n n 
N5 HN5 8H1 sing 47 n n 
N5 HN5A 8H1 sing 48 n n 
C6 H6 8H1 sing 49 n n 
C10 H10 8H1 sing 50 n n 
C12 H12 8H1 sing 51 n n 
C14 H14 8H1 sing 52 n n 
C14 H14A 8H1 sing 53 n n 
C14 H14B 8H1 sing 54 n n 
C16 H16 8H1 sing 55 n n 
C18 H18 8H1 sing 56 n n 
C19 H19 8H1 sing 57 n n 
C20 H20 8H1 sing 58 n n 
C20 H20A 8H1 sing 59 n n 
C21 H21 8H1 sing 60 n n 
C22 H22 8H1 sing 61 n n 
C22 H22A 8H1 sing 62 n n 
C24 H24 8H1 sing 63 n n 
C25 H25 8H1 sing 64 n n 
C26 H26 8H1 sing 65 n n 
C27 H27 8H1 sing 66 n n 
C28 H28 8H1 sing 67 n n 
#
_atom_sites.entry_id                     3ION 
_atom_sites.fract_transf_matrix[1][1]    0.008106 
_atom_sites.fract_transf_matrix[1][2]    0.00468 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00936 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021157 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 8H1 A 1 1 1 8H1 238 . 
C 3 SO4 A 1 360 1 SO4 SO4 . 
D 4 HOH A 1 2 2 HOH HOH . 
D 4 HOH A 2 3 3 HOH HOH . 
D 4 HOH A 3 4 4 HOH HOH . 
D 4 HOH A 4 5 5 HOH HOH . 
D 4 HOH A 5 6 6 HOH HOH . 
D 4 HOH A 6 7 7 HOH HOH . 
D 4 HOH A 7 8 8 HOH HOH . 
D 4 HOH A 8 9 9 HOH HOH . 
D 4 HOH A 9 10 10 HOH HOH . 
D 4 HOH A 10 11 11 HOH HOH . 
D 4 HOH A 11 12 12 HOH HOH . 
D 4 HOH A 12 13 13 HOH HOH . 
D 4 HOH A 13 14 14 HOH HOH . 
D 4 HOH A 14 15 15 HOH HOH . 
D 4 HOH A 15 16 16 HOH HOH . 
D 4 HOH A 16 17 17 HOH HOH . 
D 4 HOH A 17 18 18 HOH HOH . 
D 4 HOH A 18 19 19 HOH HOH . 
D 4 HOH A 19 20 20 HOH HOH . 
D 4 HOH A 20 21 21 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 8H1 . . . B 2 -35.037 -22.393 5.914 1 22.1 ? C1 8H1 1 A 1 
HETATM 2 N N1 8H1 . . . B 2 -34.454 -29.661 3.394 1 23.51 ? N1 8H1 1 A 1 
HETATM 3 O O1 8H1 . . . B 2 -33.654 -22.566 6.236 1 23.75 ? O1 8H1 1 A 1 
HETATM 4 C C2 8H1 . . . B 2 -32.995 -23.715 5.868 1 23.42 ? C2 8H1 1 A 1 
HETATM 5 N N2 8H1 . . . B 2 -30.663 -27.007 4.839 1 23.57 ? N2 8H1 1 A 1 
HETATM 6 O O2 8H1 . . . B 2 -31.067 -22.527 6.534 1 23.91 ? O2 8H1 1 A 1 
HETATM 7 C C3 8H1 . . . B 2 -33.608 -24.872 5.354 1 23.65 ? C3 8H1 1 A 1 
HETATM 8 N N3 8H1 . . . B 2 -32.317 -30.612 3.252 1 23.48 ? N3 8H1 1 A 1 
HETATM 9 O O3 8H1 . . . B 2 -39.873 -27.203 2.622 1 24.82 ? O3 8H1 1 A 1 
HETATM 10 C C4 8H1 . . . B 2 -32.862 -26.031 4.98 1 23.55 ? C4 8H1 1 A 1 
HETATM 11 N N4 8H1 . . . B 2 -38.557 -30.561 3.311 1 23.73 ? N4 8H1 1 A 1 
HETATM 12 C C5 8H1 . . . B 2 -33.43 -27.249 4.447 1 23.6 ? C5 8H1 1 A 1 
HETATM 13 N N5 8H1 . . . B 2 -41.668 -25.418 1.738 1 25.33 ? N5 8H1 1 A 1 
HETATM 14 C C6 8H1 . . . B 2 -34.815 -27.44 4.225 1 23.59 ? C6 8H1 1 A 1 
HETATM 15 C C7 8H1 . . . B 2 -35.301 -28.644 3.703 1 23.75 ? C7 8H1 1 A 1 
HETATM 16 C C8 8H1 . . . B 2 -33.121 -29.525 3.595 1 23.37 ? C8 8H1 1 A 1 
HETATM 17 C C9 8H1 . . . B 2 -32.574 -28.332 4.124 1 23.55 ? C9 8H1 1 A 1 
HETATM 18 C C10 8H1 . . . B 2 -31.208 -28.131 4.341 1 23.58 ? C10 8H1 1 A 1 
HETATM 19 C C11 8H1 . . . B 2 -31.461 -25.982 5.151 1 23.34 ? C11 8H1 1 A 1 
HETATM 20 C C12 8H1 . . . B 2 -30.858 -24.83 5.665 1 23.55 ? C12 8H1 1 A 1 
HETATM 21 C C13 8H1 . . . B 2 -31.598 -23.694 6.028 1 23.6 ? C13 8H1 1 A 1 
HETATM 22 C C14 8H1 . . . B 2 -29.711 -22.478 6.979 1 23.99 ? C14 8H1 1 A 1 
HETATM 23 C C15 8H1 . . . B 2 -36.735 -28.915 3.455 1 23.61 ? C15 8H1 1 A 1 
HETATM 24 C C16 8H1 . . . B 2 -37.674 -27.918 3.15 1 23.75 ? C16 8H1 1 A 1 
HETATM 25 C C17 8H1 . . . B 2 -39.025 -28.227 2.929 1 23.87 ? C17 8H1 1 A 1 
HETATM 26 C C18 8H1 . . . B 2 -39.408 -29.554 3.025 1 23.56 ? C18 8H1 1 A 1 
HETATM 27 C C19 8H1 . . . B 2 -37.262 -30.215 3.524 1 24.24 ? C19 8H1 1 A 1 
HETATM 28 C C20 8H1 . . . B 2 -39.496 -25.835 2.797 1 25.59 ? C20 8H1 1 A 1 
HETATM 29 C C21 8H1 . . . B 2 -40.797 -25.013 2.886 1 26.61 ? C21 8H1 1 A 1 
HETATM 30 C C22 8H1 . . . B 2 -41.62 -25.144 4.194 1 27.29 ? C22 8H1 1 A 1 
HETATM 31 C C23 8H1 . . . B 2 -41.455 -26.424 4.986 1 27.63 ? C23 8H1 1 A 1 
HETATM 32 C C24 8H1 . . . B 2 -42.316 -27.515 4.756 1 27.48 ? C24 8H1 1 A 1 
HETATM 33 C C25 8H1 . . . B 2 -42.162 -28.704 5.482 1 27.43 ? C25 8H1 1 A 1 
HETATM 34 C C26 8H1 . . . B 2 -41.147 -28.805 6.441 1 27.26 ? C26 8H1 1 A 1 
HETATM 35 C C27 8H1 . . . B 2 -40.282 -27.731 6.674 1 26.62 ? C27 8H1 1 A 1 
HETATM 36 C C28 8H1 . . . B 2 -40.435 -26.543 5.952 1 27.16 ? C28 8H1 1 A 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           1052 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           36 
#