data_3IOP # _model_server_result.job_id JHuZOVdvJe8sL5qEJxdcNA _model_server_result.datetime_utc '2024-11-23 13:57:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3iop # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3IOP # _exptl.entry_id 3IOP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 481.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(5-{[(2R)-2-amino-3-phenylpropyl]oxy}pyridin-3-yl)-8,9-dimethoxybenzo[c][2,7]naphthyridin-4-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3IOP _cell.length_a 122.874 _cell.length_b 122.874 _cell.length_c 47.16 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IOP _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id SEP _struct_conn.ptnr1_label_seq_id 194 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SEP _struct_conn.ptnr1_auth_seq_id 241 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id PHE _struct_conn.ptnr2_label_seq_id 195 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PHE _struct_conn.ptnr2_auth_seq_id 242 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.333 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C28 H27 N5 O3' _chem_comp.formula_weight 481.546 _chem_comp.id 8I1 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(5-{[(2R)-2-amino-3-phenylpropyl]oxy}pyridin-3-yl)-8,9-dimethoxybenzo[c][2,7]naphthyridin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 8I1 sing 1 n n N1 C7 8I1 doub 2 n y N1 C8 8I1 sing 3 n y O1 C2 8I1 sing 4 n n C2 C3 8I1 doub 5 n y C2 C13 8I1 sing 6 n y N2 C10 8I1 doub 7 n y N2 C11 8I1 sing 8 n y O2 C13 8I1 sing 9 n n O2 C14 8I1 sing 10 n n C3 C4 8I1 sing 11 n y N3 C8 8I1 sing 12 n n O3 C17 8I1 sing 13 n n O3 C20 8I1 sing 14 n n C4 C5 8I1 sing 15 n y C4 C11 8I1 doub 16 n y N4 C18 8I1 doub 17 n y N4 C19 8I1 sing 18 n y C5 C6 8I1 doub 19 n y C5 C9 8I1 sing 20 n y N5 C21 8I1 sing 21 n n C6 C7 8I1 sing 22 n y C7 C15 8I1 sing 23 n y C8 C9 8I1 doub 24 n y C9 C10 8I1 sing 25 n y C11 C12 8I1 sing 26 n y C12 C13 8I1 doub 27 n y C15 C16 8I1 sing 28 n y C15 C19 8I1 doub 29 n y C16 C17 8I1 doub 30 n y C17 C18 8I1 sing 31 n y C20 C21 8I1 sing 32 n n C21 C22 8I1 sing 33 n n C22 C23 8I1 sing 34 n n C23 C24 8I1 doub 35 n y C23 C28 8I1 sing 36 n y C24 C25 8I1 sing 37 n y C25 C26 8I1 doub 38 n y C26 C27 8I1 sing 39 n y C27 C28 8I1 doub 40 n y C1 H1 8I1 sing 41 n n C1 H1A 8I1 sing 42 n n C1 H1B 8I1 sing 43 n n C3 H3 8I1 sing 44 n n N3 HN3 8I1 sing 45 n n N3 HN3A 8I1 sing 46 n n N5 HN5 8I1 sing 47 n n N5 HN5A 8I1 sing 48 n n C6 H6 8I1 sing 49 n n C10 H10 8I1 sing 50 n n C12 H12 8I1 sing 51 n n C14 H14 8I1 sing 52 n n C14 H14A 8I1 sing 53 n n C14 H14B 8I1 sing 54 n n C16 H16 8I1 sing 55 n n C18 H18 8I1 sing 56 n n C19 H19 8I1 sing 57 n n C20 H20 8I1 sing 58 n n C20 H20A 8I1 sing 59 n n C21 H21 8I1 sing 60 n n C22 H22 8I1 sing 61 n n C22 H22A 8I1 sing 62 n n C24 H24 8I1 sing 63 n n C25 H25 8I1 sing 64 n n C26 H26 8I1 sing 65 n n C27 H27 8I1 sing 66 n n C28 H28 8I1 sing 67 n n # _atom_sites.entry_id 3IOP _atom_sites.fract_transf_matrix[1][1] 0.008138 _atom_sites.fract_transf_matrix[1][2] 0.004699 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009397 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021204 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8I1 A 1 1 1 8I1 577 . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 7 7 HOH HOH . C 3 HOH A 7 8 8 HOH HOH . C 3 HOH A 8 9 9 HOH HOH . C 3 HOH A 9 10 10 HOH HOH . C 3 HOH A 10 11 11 HOH HOH . C 3 HOH A 11 12 12 HOH HOH . C 3 HOH A 12 13 13 HOH HOH . C 3 HOH A 13 14 14 HOH HOH . C 3 HOH A 14 16 16 HOH HOH . C 3 HOH A 15 18 18 HOH HOH . C 3 HOH A 16 19 19 HOH HOH . C 3 HOH A 17 20 20 HOH HOH . C 3 HOH A 18 21 21 HOH HOH . C 3 HOH A 19 22 22 HOH HOH . C 3 HOH A 20 23 23 HOH HOH . C 3 HOH A 21 24 24 HOH HOH . C 3 HOH A 22 25 25 HOH HOH . C 3 HOH A 23 26 26 HOH HOH . C 3 HOH A 24 27 27 HOH HOH . C 3 HOH A 25 28 28 HOH HOH . C 3 HOH A 26 29 29 HOH HOH . C 3 HOH A 27 30 30 HOH HOH . C 3 HOH A 28 31 31 HOH HOH . C 3 HOH A 29 32 32 HOH HOH . C 3 HOH A 30 33 33 HOH HOH . C 3 HOH A 31 34 34 HOH HOH . C 3 HOH A 32 35 35 HOH HOH . C 3 HOH A 33 36 36 HOH HOH . C 3 HOH A 34 37 37 HOH HOH . C 3 HOH A 35 38 38 HOH HOH . C 3 HOH A 36 39 39 HOH HOH . C 3 HOH A 37 40 40 HOH HOH . C 3 HOH A 38 41 41 HOH HOH . C 3 HOH A 39 42 42 HOH HOH . C 3 HOH A 40 43 43 HOH HOH . C 3 HOH A 41 44 44 HOH HOH . C 3 HOH A 42 46 46 HOH HOH . C 3 HOH A 43 47 47 HOH HOH . C 3 HOH A 44 360 1 HOH HOH . C 3 HOH A 45 361 48 HOH HOH . C 3 HOH A 46 362 49 HOH HOH . C 3 HOH A 47 363 50 HOH HOH . C 3 HOH A 48 364 51 HOH HOH . C 3 HOH A 49 365 53 HOH HOH . C 3 HOH A 50 366 55 HOH HOH . C 3 HOH A 51 367 56 HOH HOH . C 3 HOH A 52 368 57 HOH HOH . C 3 HOH A 53 369 58 HOH HOH . C 3 HOH A 54 370 59 HOH HOH . C 3 HOH A 55 371 60 HOH HOH . C 3 HOH A 56 372 61 HOH HOH . C 3 HOH A 57 373 62 HOH HOH . C 3 HOH A 58 374 63 HOH HOH . C 3 HOH A 59 375 64 HOH HOH . C 3 HOH A 60 376 65 HOH HOH . C 3 HOH A 61 377 66 HOH HOH . C 3 HOH A 62 378 67 HOH HOH . C 3 HOH A 63 379 68 HOH HOH . C 3 HOH A 64 380 70 HOH HOH . C 3 HOH A 65 381 71 HOH HOH . C 3 HOH A 66 382 72 HOH HOH . C 3 HOH A 67 383 73 HOH HOH . C 3 HOH A 68 384 74 HOH HOH . C 3 HOH A 69 385 75 HOH HOH . C 3 HOH A 70 386 76 HOH HOH . C 3 HOH A 71 387 77 HOH HOH . C 3 HOH A 72 388 78 HOH HOH . C 3 HOH A 73 389 79 HOH HOH . C 3 HOH A 74 390 80 HOH HOH . C 3 HOH A 75 391 82 HOH HOH . C 3 HOH A 76 392 83 HOH HOH . C 3 HOH A 77 393 86 HOH HOH . C 3 HOH A 78 394 87 HOH HOH . C 3 HOH A 79 395 88 HOH HOH . C 3 HOH A 80 396 89 HOH HOH . C 3 HOH A 81 397 90 HOH HOH . C 3 HOH A 82 398 91 HOH HOH . C 3 HOH A 83 399 93 HOH HOH . C 3 HOH A 84 400 94 HOH HOH . C 3 HOH A 85 401 97 HOH HOH . C 3 HOH A 86 402 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 8I1 . . . B 2 -35.016 -22.117 5.778 1 21.63 ? C1 8I1 1 A 1 HETATM 2 N N1 8I1 . . . B 2 -34.409 -29.392 3.312 1 22.93 ? N1 8I1 1 A 1 HETATM 3 O O1 8I1 . . . B 2 -33.673 -22.333 6.213 1 23.05 ? O1 8I1 1 A 1 HETATM 4 C C2 8I1 . . . B 2 -32.985 -23.456 5.808 1 22.85 ? C2 8I1 1 A 1 HETATM 5 N N2 8I1 . . . B 2 -30.607 -26.687 4.676 1 22.82 ? N2 8I1 1 A 1 HETATM 6 O O2 8I1 . . . B 2 -31.053 -22.243 6.438 1 23.03 ? O2 8I1 1 A 1 HETATM 7 C C3 8I1 . . . B 2 -33.582 -24.621 5.301 1 22.94 ? C3 8I1 1 A 1 HETATM 8 N N3 8I1 . . . B 2 -32.264 -30.304 3.092 1 22.81 ? N3 8I1 1 A 1 HETATM 9 O O3 8I1 . . . B 2 -39.72 -26.67 3.014 1 26.03 ? O3 8I1 1 A 1 HETATM 10 C C4 8I1 . . . B 2 -32.826 -25.758 4.896 1 22.84 ? C4 8I1 1 A 1 HETATM 11 N N4 8I1 . . . B 2 -38.583 -30.21 3.2 1 24.19 ? N4 8I1 1 A 1 HETATM 12 C C5 8I1 . . . B 2 -33.389 -26.977 4.365 1 22.92 ? C5 8I1 1 A 1 HETATM 13 N N5 8I1 . . . B 2 -40.992 -24.277 2.459 1 32.38 ? N5 8I1 1 A 1 HETATM 14 C C6 8I1 . . . B 2 -34.777 -27.191 4.174 1 22.92 ? C6 8I1 1 A 1 HETATM 15 C C7 8I1 . . . B 2 -35.259 -28.394 3.653 1 23.26 ? C7 8I1 1 A 1 HETATM 16 C C8 8I1 . . . B 2 -33.072 -29.233 3.473 1 22.86 ? C8 8I1 1 A 1 HETATM 17 C C9 8I1 . . . B 2 -32.524 -28.038 4.002 1 22.86 ? C9 8I1 1 A 1 HETATM 18 C C10 8I1 . . . B 2 -31.154 -27.816 4.184 1 22.88 ? C10 8I1 1 A 1 HETATM 19 C C11 8I1 . . . B 2 -31.419 -25.682 5.025 1 22.89 ? C11 8I1 1 A 1 HETATM 20 C C12 8I1 . . . B 2 -30.83 -24.526 5.534 1 22.89 ? C12 8I1 1 A 1 HETATM 21 C C13 8I1 . . . B 2 -31.582 -23.409 5.929 1 22.97 ? C13 8I1 1 A 1 HETATM 22 C C14 8I1 . . . B 2 -29.656 -22.147 6.709 1 23.09 ? C14 8I1 1 A 1 HETATM 23 C C15 8I1 . . . B 2 -36.698 -28.663 3.447 1 23.13 ? C15 8I1 1 A 1 HETATM 24 C C16 8I1 . . . B 2 -37.617 -27.606 3.314 1 23.98 ? C16 8I1 1 A 1 HETATM 25 C C17 8I1 . . . B 2 -38.986 -27.822 3.125 1 24.81 ? C17 8I1 1 A 1 HETATM 26 C C18 8I1 . . . B 2 -39.416 -29.143 3.08 1 23.97 ? C18 8I1 1 A 1 HETATM 27 C C19 8I1 . . . B 2 -37.257 -29.947 3.384 1 23.99 ? C19 8I1 1 A 1 HETATM 28 C C20 8I1 . . . B 2 -41.108 -26.713 2.662 1 29.71 ? C20 8I1 1 A 1 HETATM 29 C C21 8I1 . . . B 2 -41.777 -25.39 3.076 1 31.71 ? C21 8I1 1 A 1 HETATM 30 C C22 8I1 . . . B 2 -41.884 -25.104 4.596 1 33.25 ? C22 8I1 1 A 1 HETATM 31 C C23 8I1 . . . B 2 -41.394 -26.209 5.504 1 34.09 ? C23 8I1 1 A 1 HETATM 32 C C24 8I1 . . . B 2 -40.087 -26.172 6.03 1 34.15 ? C24 8I1 1 A 1 HETATM 33 C C25 8I1 . . . B 2 -39.629 -27.203 6.855 1 34.2 ? C25 8I1 1 A 1 HETATM 34 C C26 8I1 . . . B 2 -40.469 -28.274 7.171 1 34.19 ? C26 8I1 1 A 1 HETATM 35 C C27 8I1 . . . B 2 -41.768 -28.322 6.656 1 34.72 ? C27 8I1 1 A 1 HETATM 36 C C28 8I1 . . . B 2 -42.234 -27.294 5.827 1 34.76 ? C28 8I1 1 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 36 #