data_3IOQ # _model_server_result.job_id LQfS0QlXHx5EsQTXjFQSUg _model_server_result.datetime_utc '2024-11-07 23:38:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ioq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":505}' # _entry.id 3IOQ # _exptl.entry_id 3IOQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3IOQ _cell.length_a 73.639 _cell.length_b 73.639 _cell.length_c 118.786 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IOQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? disulf ? disulf3 A SG CYS 153 A CYS 153 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? covale covalent covale1 A SG CYS 25 A CYS 25 1_555 B C2 E64 . A E64 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 137 n n C1 C2 EDO sing 138 n n C1 H11 EDO sing 139 n n C1 H12 EDO sing 140 n n O1 HO1 EDO sing 141 n n C2 O2 EDO sing 142 n n C2 H21 EDO sing 143 n n C2 H22 EDO sing 144 n n O2 HO2 EDO sing 145 n n # _atom_sites.entry_id 3IOQ _atom_sites.fract_transf_matrix[1][1] 0.01358 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01358 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008419 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 E64 A 1 301 301 E64 E64 . C 3 SO4 A 1 401 401 SO4 SO4 . D 3 SO4 A 1 402 402 SO4 SO4 . E 3 SO4 A 1 403 403 SO4 SO4 . F 3 SO4 A 1 404 404 SO4 SO4 . G 3 SO4 A 1 405 405 SO4 SO4 . H 3 SO4 A 1 406 406 SO4 SO4 . I 3 SO4 A 1 407 407 SO4 SO4 . J 3 SO4 A 1 408 408 SO4 SO4 . K 4 EDO A 1 501 501 EDO EDO . L 4 EDO A 1 502 502 EDO EDO . M 4 EDO A 1 503 503 EDO EDO . N 4 EDO A 1 504 504 EDO EDO . O 4 EDO A 1 505 505 EDO EDO . P 4 EDO A 1 506 506 EDO EDO . Q 4 EDO A 1 507 507 EDO EDO . R 4 EDO A 1 508 508 EDO EDO . S 4 EDO A 1 509 509 EDO EDO . T 4 EDO A 1 510 510 EDO EDO . U 5 HOH A 1 217 1 HOH HOH . U 5 HOH A 2 218 2 HOH HOH . U 5 HOH A 3 219 3 HOH HOH . U 5 HOH A 4 220 4 HOH HOH . U 5 HOH A 5 221 5 HOH HOH . U 5 HOH A 6 222 6 HOH HOH . U 5 HOH A 7 223 7 HOH HOH . U 5 HOH A 8 224 8 HOH HOH . U 5 HOH A 9 225 9 HOH HOH . U 5 HOH A 10 226 10 HOH HOH . U 5 HOH A 11 227 11 HOH HOH . U 5 HOH A 12 228 12 HOH HOH . U 5 HOH A 13 229 13 HOH HOH . U 5 HOH A 14 230 14 HOH HOH . U 5 HOH A 15 231 15 HOH HOH . U 5 HOH A 16 232 16 HOH HOH . U 5 HOH A 17 233 17 HOH HOH . U 5 HOH A 18 234 18 HOH HOH . U 5 HOH A 19 235 19 HOH HOH . U 5 HOH A 20 236 20 HOH HOH . U 5 HOH A 21 237 21 HOH HOH . U 5 HOH A 22 238 22 HOH HOH . U 5 HOH A 23 239 23 HOH HOH . U 5 HOH A 24 240 24 HOH HOH . U 5 HOH A 25 241 25 HOH HOH . U 5 HOH A 26 242 26 HOH HOH . U 5 HOH A 27 243 27 HOH HOH . U 5 HOH A 28 244 28 HOH HOH . U 5 HOH A 29 245 29 HOH HOH . U 5 HOH A 30 246 30 HOH HOH . U 5 HOH A 31 247 31 HOH HOH . U 5 HOH A 32 248 32 HOH HOH . U 5 HOH A 33 249 33 HOH HOH . U 5 HOH A 34 250 34 HOH HOH . U 5 HOH A 35 251 35 HOH HOH . U 5 HOH A 36 252 36 HOH HOH . U 5 HOH A 37 253 37 HOH HOH . U 5 HOH A 38 254 38 HOH HOH . U 5 HOH A 39 255 39 HOH HOH . U 5 HOH A 40 256 40 HOH HOH . U 5 HOH A 41 257 41 HOH HOH . U 5 HOH A 42 258 42 HOH HOH . U 5 HOH A 43 259 43 HOH HOH . U 5 HOH A 44 260 44 HOH HOH . U 5 HOH A 45 261 45 HOH HOH . U 5 HOH A 46 262 46 HOH HOH . U 5 HOH A 47 263 47 HOH HOH . U 5 HOH A 48 264 48 HOH HOH . U 5 HOH A 49 265 49 HOH HOH . U 5 HOH A 50 266 50 HOH HOH . U 5 HOH A 51 267 51 HOH HOH . U 5 HOH A 52 268 52 HOH HOH . U 5 HOH A 53 269 53 HOH HOH . U 5 HOH A 54 270 54 HOH HOH . U 5 HOH A 55 271 55 HOH HOH . U 5 HOH A 56 272 56 HOH HOH . U 5 HOH A 57 273 57 HOH HOH . U 5 HOH A 58 274 58 HOH HOH . U 5 HOH A 59 275 59 HOH HOH . U 5 HOH A 60 276 60 HOH HOH . U 5 HOH A 61 277 61 HOH HOH . U 5 HOH A 62 278 62 HOH HOH . U 5 HOH A 63 279 63 HOH HOH . U 5 HOH A 64 280 64 HOH HOH . U 5 HOH A 65 281 65 HOH HOH . U 5 HOH A 66 282 66 HOH HOH . U 5 HOH A 67 283 67 HOH HOH . U 5 HOH A 68 284 68 HOH HOH . U 5 HOH A 69 285 69 HOH HOH . U 5 HOH A 70 286 70 HOH HOH . U 5 HOH A 71 287 71 HOH HOH . U 5 HOH A 72 288 72 HOH HOH . U 5 HOH A 73 289 73 HOH HOH . U 5 HOH A 74 290 74 HOH HOH . U 5 HOH A 75 291 75 HOH HOH . U 5 HOH A 76 292 76 HOH HOH . U 5 HOH A 77 293 77 HOH HOH . U 5 HOH A 78 294 78 HOH HOH . U 5 HOH A 79 295 79 HOH HOH . U 5 HOH A 80 296 80 HOH HOH . U 5 HOH A 81 297 81 HOH HOH . U 5 HOH A 82 298 82 HOH HOH . U 5 HOH A 83 299 83 HOH HOH . U 5 HOH A 84 300 84 HOH HOH . U 5 HOH A 85 302 85 HOH HOH . U 5 HOH A 86 303 86 HOH HOH . U 5 HOH A 87 304 87 HOH HOH . U 5 HOH A 88 305 88 HOH HOH . U 5 HOH A 89 306 89 HOH HOH . U 5 HOH A 90 307 90 HOH HOH . U 5 HOH A 91 308 91 HOH HOH . U 5 HOH A 92 309 92 HOH HOH . U 5 HOH A 93 310 93 HOH HOH . U 5 HOH A 94 311 94 HOH HOH . U 5 HOH A 95 312 95 HOH HOH . U 5 HOH A 96 313 96 HOH HOH . U 5 HOH A 97 314 97 HOH HOH . U 5 HOH A 98 315 98 HOH HOH . U 5 HOH A 99 316 99 HOH HOH . U 5 HOH A 100 317 100 HOH HOH . U 5 HOH A 101 318 101 HOH HOH . U 5 HOH A 102 319 102 HOH HOH . U 5 HOH A 103 320 103 HOH HOH . U 5 HOH A 104 321 104 HOH HOH . U 5 HOH A 105 322 105 HOH HOH . U 5 HOH A 106 323 106 HOH HOH . U 5 HOH A 107 324 107 HOH HOH . U 5 HOH A 108 325 108 HOH HOH . U 5 HOH A 109 326 109 HOH HOH . U 5 HOH A 110 327 110 HOH HOH . U 5 HOH A 111 328 111 HOH HOH . U 5 HOH A 112 329 112 HOH HOH . U 5 HOH A 113 330 113 HOH HOH . U 5 HOH A 114 331 114 HOH HOH . U 5 HOH A 115 332 115 HOH HOH . U 5 HOH A 116 333 116 HOH HOH . U 5 HOH A 117 334 117 HOH HOH . U 5 HOH A 118 335 118 HOH HOH . U 5 HOH A 119 336 119 HOH HOH . U 5 HOH A 120 337 120 HOH HOH . U 5 HOH A 121 338 121 HOH HOH . U 5 HOH A 122 339 122 HOH HOH . U 5 HOH A 123 340 123 HOH HOH . U 5 HOH A 124 341 124 HOH HOH . U 5 HOH A 125 342 125 HOH HOH . U 5 HOH A 126 343 126 HOH HOH . U 5 HOH A 127 344 127 HOH HOH . U 5 HOH A 128 345 128 HOH HOH . U 5 HOH A 129 346 129 HOH HOH . U 5 HOH A 130 347 130 HOH HOH . U 5 HOH A 131 348 131 HOH HOH . U 5 HOH A 132 349 132 HOH HOH . U 5 HOH A 133 350 133 HOH HOH . U 5 HOH A 134 351 134 HOH HOH . U 5 HOH A 135 352 135 HOH HOH . U 5 HOH A 136 353 136 HOH HOH . U 5 HOH A 137 354 137 HOH HOH . U 5 HOH A 138 355 138 HOH HOH . U 5 HOH A 139 356 139 HOH HOH . U 5 HOH A 140 357 140 HOH HOH . U 5 HOH A 141 358 141 HOH HOH . U 5 HOH A 142 359 142 HOH HOH . U 5 HOH A 143 360 143 HOH HOH . U 5 HOH A 144 361 144 HOH HOH . U 5 HOH A 145 362 145 HOH HOH . U 5 HOH A 146 363 146 HOH HOH . U 5 HOH A 147 364 147 HOH HOH . U 5 HOH A 148 365 148 HOH HOH . U 5 HOH A 149 366 149 HOH HOH . U 5 HOH A 150 367 150 HOH HOH . U 5 HOH A 151 368 151 HOH HOH . U 5 HOH A 152 369 152 HOH HOH . U 5 HOH A 153 370 153 HOH HOH . U 5 HOH A 154 371 154 HOH HOH . U 5 HOH A 155 372 155 HOH HOH . U 5 HOH A 156 373 156 HOH HOH . U 5 HOH A 157 374 157 HOH HOH . U 5 HOH A 158 375 158 HOH HOH . U 5 HOH A 159 376 159 HOH HOH . U 5 HOH A 160 377 160 HOH HOH . U 5 HOH A 161 378 161 HOH HOH . U 5 HOH A 162 379 162 HOH HOH . U 5 HOH A 163 380 163 HOH HOH . U 5 HOH A 164 381 164 HOH HOH . U 5 HOH A 165 382 165 HOH HOH . U 5 HOH A 166 383 166 HOH HOH . U 5 HOH A 167 384 167 HOH HOH . U 5 HOH A 168 385 168 HOH HOH . U 5 HOH A 169 386 169 HOH HOH . U 5 HOH A 170 387 170 HOH HOH . U 5 HOH A 171 388 171 HOH HOH . U 5 HOH A 172 389 172 HOH HOH . U 5 HOH A 173 390 173 HOH HOH . U 5 HOH A 174 391 174 HOH HOH . U 5 HOH A 175 392 175 HOH HOH . U 5 HOH A 176 393 176 HOH HOH . U 5 HOH A 177 394 177 HOH HOH . U 5 HOH A 178 395 178 HOH HOH . U 5 HOH A 179 396 179 HOH HOH . U 5 HOH A 180 397 180 HOH HOH . U 5 HOH A 181 398 181 HOH HOH . U 5 HOH A 182 399 182 HOH HOH . U 5 HOH A 183 400 183 HOH HOH . U 5 HOH A 184 409 184 HOH HOH . U 5 HOH A 185 410 185 HOH HOH . U 5 HOH A 186 411 186 HOH HOH . U 5 HOH A 187 412 187 HOH HOH . U 5 HOH A 188 413 188 HOH HOH . U 5 HOH A 189 414 189 HOH HOH . U 5 HOH A 190 415 190 HOH HOH . U 5 HOH A 191 416 191 HOH HOH . U 5 HOH A 192 417 192 HOH HOH . U 5 HOH A 193 418 193 HOH HOH . U 5 HOH A 194 419 194 HOH HOH . U 5 HOH A 195 420 195 HOH HOH . U 5 HOH A 196 421 196 HOH HOH . U 5 HOH A 197 422 197 HOH HOH . U 5 HOH A 198 423 198 HOH HOH . U 5 HOH A 199 424 199 HOH HOH . U 5 HOH A 200 425 200 HOH HOH . U 5 HOH A 201 426 201 HOH HOH . U 5 HOH A 202 427 202 HOH HOH . U 5 HOH A 203 428 203 HOH HOH . U 5 HOH A 204 429 204 HOH HOH . U 5 HOH A 205 430 205 HOH HOH . U 5 HOH A 206 431 206 HOH HOH . U 5 HOH A 207 432 207 HOH HOH . U 5 HOH A 208 433 208 HOH HOH . U 5 HOH A 209 434 209 HOH HOH . U 5 HOH A 210 435 210 HOH HOH . U 5 HOH A 211 436 211 HOH HOH . U 5 HOH A 212 437 212 HOH HOH . U 5 HOH A 213 438 213 HOH HOH . U 5 HOH A 214 439 214 HOH HOH . U 5 HOH A 215 440 215 HOH HOH . U 5 HOH A 216 441 216 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . O 4 15.67 -33.85 2.872 1 51.26 ? C1 EDO 505 A 1 HETATM 2 O O1 EDO . . . O 4 14.399 -34.445 2.621 1 51.74 ? O1 EDO 505 A 1 HETATM 3 C C2 EDO . . . O 4 16.788 -34.885 2.813 1 53.02 ? C2 EDO 505 A 1 HETATM 4 O O2 EDO . . . O 4 17.726 -34.642 3.868 1 52.71 ? O2 EDO 505 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #