data_3IP8 # _model_server_result.job_id pVTD6ZD3nbmSioAU1b_wFA _model_server_result.datetime_utc '2024-10-14 14:16:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ip8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":249}' # _entry.id 3IP8 # _exptl.entry_id 3IP8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 172.118 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'benzylphosphonic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.42 _cell.angle_gamma 90 _cell.entry_id 3IP8 _cell.length_a 38.64 _cell.length_b 65.6 _cell.length_c 41.88 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IP8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H9 O3 P' _chem_comp.formula_weight 172.118 _chem_comp.id B85 _chem_comp.mon_nstd_flag . _chem_comp.name 'benzylphosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C1 B85 doub 70 n y C2 C1 B85 sing 71 n y C1 H1 B85 sing 72 n n C3 C2 B85 doub 73 n y C2 H2 B85 sing 74 n n C4 C3 B85 sing 75 n y C3 H3 B85 sing 76 n n C4 C5 B85 doub 77 n y C4 H4 B85 sing 78 n n C5 C6 B85 sing 79 n y C5 H5 B85 sing 80 n n C6 C7 B85 sing 81 n n P8 C7 B85 sing 82 n n C7 H7 B85 sing 83 n n C7 H7A B85 sing 84 n n O9 P8 B85 doub 85 n n O11 P8 B85 sing 86 n n P8 O10 B85 sing 87 n n O10 HO10 B85 sing 88 n n O11 HO11 B85 sing 89 n n # _atom_sites.entry_id 3IP8 _atom_sites.fract_transf_matrix[1][1] 0.02588 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009635 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015244 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025479 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B85 A 1 249 1 B85 CPD . C 3 HOH A 1 250 250 HOH HOH . C 3 HOH A 2 251 2 HOH HOH . C 3 HOH A 3 252 252 HOH HOH . C 3 HOH A 4 253 253 HOH HOH . C 3 HOH A 5 254 3 HOH HOH . C 3 HOH A 6 255 255 HOH HOH . C 3 HOH A 7 256 256 HOH HOH . C 3 HOH A 8 257 257 HOH HOH . C 3 HOH A 9 258 258 HOH HOH . C 3 HOH A 10 259 259 HOH HOH . C 3 HOH A 11 260 4 HOH HOH . C 3 HOH A 12 261 261 HOH HOH . C 3 HOH A 13 262 5 HOH HOH . C 3 HOH A 14 263 6 HOH HOH . C 3 HOH A 15 264 264 HOH HOH . C 3 HOH A 16 265 265 HOH HOH . C 3 HOH A 17 266 266 HOH HOH . C 3 HOH A 18 267 267 HOH HOH . C 3 HOH A 19 268 268 HOH HOH . C 3 HOH A 20 269 269 HOH HOH . C 3 HOH A 21 270 7 HOH HOH . C 3 HOH A 22 271 271 HOH HOH . C 3 HOH A 23 272 272 HOH HOH . C 3 HOH A 24 273 273 HOH HOH . C 3 HOH A 25 274 274 HOH HOH . C 3 HOH A 26 275 275 HOH HOH . C 3 HOH A 27 276 8 HOH HOH . C 3 HOH A 28 277 277 HOH HOH . C 3 HOH A 29 278 278 HOH HOH . C 3 HOH A 30 279 9 HOH HOH . C 3 HOH A 31 280 280 HOH HOH . C 3 HOH A 32 281 281 HOH HOH . C 3 HOH A 33 282 282 HOH HOH . C 3 HOH A 34 283 10 HOH HOH . C 3 HOH A 35 284 11 HOH HOH . C 3 HOH A 36 285 285 HOH HOH . C 3 HOH A 37 286 286 HOH HOH . C 3 HOH A 38 287 287 HOH HOH . C 3 HOH A 39 288 12 HOH HOH . C 3 HOH A 40 289 289 HOH HOH . C 3 HOH A 41 290 13 HOH HOH . C 3 HOH A 42 291 14 HOH HOH . C 3 HOH A 43 292 15 HOH HOH . C 3 HOH A 44 293 293 HOH HOH . C 3 HOH A 45 294 16 HOH HOH . C 3 HOH A 46 295 295 HOH HOH . C 3 HOH A 47 296 17 HOH HOH . C 3 HOH A 48 297 18 HOH HOH . C 3 HOH A 49 298 298 HOH HOH . C 3 HOH A 50 299 299 HOH HOH . C 3 HOH A 51 300 300 HOH HOH . C 3 HOH A 52 301 301 HOH HOH . C 3 HOH A 53 302 302 HOH HOH . C 3 HOH A 54 303 19 HOH HOH . C 3 HOH A 55 304 20 HOH HOH . C 3 HOH A 56 305 305 HOH HOH . C 3 HOH A 57 306 21 HOH HOH . C 3 HOH A 58 307 307 HOH HOH . C 3 HOH A 59 308 22 HOH HOH . C 3 HOH A 60 309 23 HOH HOH . C 3 HOH A 61 310 24 HOH HOH . C 3 HOH A 62 311 311 HOH HOH . C 3 HOH A 63 312 312 HOH HOH . C 3 HOH A 64 313 25 HOH HOH . C 3 HOH A 65 314 314 HOH HOH . C 3 HOH A 66 315 315 HOH HOH . C 3 HOH A 67 316 26 HOH HOH . C 3 HOH A 68 317 27 HOH HOH . C 3 HOH A 69 318 318 HOH HOH . C 3 HOH A 70 319 319 HOH HOH . C 3 HOH A 71 320 320 HOH HOH . C 3 HOH A 72 321 321 HOH HOH . C 3 HOH A 73 322 28 HOH HOH . C 3 HOH A 74 323 29 HOH HOH . C 3 HOH A 75 324 324 HOH HOH . C 3 HOH A 76 325 30 HOH HOH . C 3 HOH A 77 326 326 HOH HOH . C 3 HOH A 78 327 31 HOH HOH . C 3 HOH A 79 328 328 HOH HOH . C 3 HOH A 80 329 329 HOH HOH . C 3 HOH A 81 330 330 HOH HOH . C 3 HOH A 82 331 32 HOH HOH . C 3 HOH A 83 332 33 HOH HOH . C 3 HOH A 84 333 34 HOH HOH . C 3 HOH A 85 334 334 HOH HOH . C 3 HOH A 86 335 35 HOH HOH . C 3 HOH A 87 336 336 HOH HOH . C 3 HOH A 88 337 337 HOH HOH . C 3 HOH A 89 338 36 HOH HOH . C 3 HOH A 90 339 339 HOH HOH . C 3 HOH A 91 340 37 HOH HOH . C 3 HOH A 92 341 38 HOH HOH . C 3 HOH A 93 342 39 HOH HOH . C 3 HOH A 94 343 40 HOH HOH . C 3 HOH A 95 344 344 HOH HOH . C 3 HOH A 96 345 41 HOH HOH . C 3 HOH A 97 346 346 HOH HOH . C 3 HOH A 98 347 347 HOH HOH . C 3 HOH A 99 348 42 HOH HOH . C 3 HOH A 100 349 43 HOH HOH . C 3 HOH A 101 350 350 HOH HOH . C 3 HOH A 102 351 351 HOH HOH . C 3 HOH A 103 352 352 HOH HOH . C 3 HOH A 104 353 44 HOH HOH . C 3 HOH A 105 354 45 HOH HOH . C 3 HOH A 106 355 355 HOH HOH . C 3 HOH A 107 356 356 HOH HOH . C 3 HOH A 108 357 357 HOH HOH . C 3 HOH A 109 358 358 HOH HOH . C 3 HOH A 110 359 359 HOH HOH . C 3 HOH A 111 360 360 HOH HOH . C 3 HOH A 112 361 46 HOH HOH . C 3 HOH A 113 362 362 HOH HOH . C 3 HOH A 114 363 363 HOH HOH . C 3 HOH A 115 364 47 HOH HOH . C 3 HOH A 116 365 49 HOH HOH . C 3 HOH A 117 366 50 HOH HOH . C 3 HOH A 118 367 51 HOH HOH . C 3 HOH A 119 368 52 HOH HOH . C 3 HOH A 120 369 53 HOH HOH . C 3 HOH A 121 370 54 HOH HOH . C 3 HOH A 122 371 55 HOH HOH . C 3 HOH A 123 372 56 HOH HOH . C 3 HOH A 124 373 57 HOH HOH . C 3 HOH A 125 374 58 HOH HOH . C 3 HOH A 126 375 59 HOH HOH . C 3 HOH A 127 376 60 HOH HOH . C 3 HOH A 128 377 61 HOH HOH . C 3 HOH A 129 378 62 HOH HOH . C 3 HOH A 130 379 63 HOH HOH . C 3 HOH A 131 380 64 HOH HOH . C 3 HOH A 132 381 65 HOH HOH . C 3 HOH A 133 382 67 HOH HOH . C 3 HOH A 134 383 68 HOH HOH . C 3 HOH A 135 384 69 HOH HOH . C 3 HOH A 136 385 70 HOH HOH . C 3 HOH A 137 386 71 HOH HOH . C 3 HOH A 138 387 72 HOH HOH . C 3 HOH A 139 388 73 HOH HOH . C 3 HOH A 140 389 74 HOH HOH . C 3 HOH A 141 390 75 HOH HOH . C 3 HOH A 142 391 76 HOH HOH . C 3 HOH A 143 392 77 HOH HOH . C 3 HOH A 144 393 78 HOH HOH . C 3 HOH A 145 394 79 HOH HOH . C 3 HOH A 146 395 80 HOH HOH . C 3 HOH A 147 396 81 HOH HOH . C 3 HOH A 148 397 82 HOH HOH . C 3 HOH A 149 398 83 HOH HOH . C 3 HOH A 150 399 84 HOH HOH . C 3 HOH A 151 400 85 HOH HOH . C 3 HOH A 152 401 86 HOH HOH . C 3 HOH A 153 402 87 HOH HOH . C 3 HOH A 154 403 90 HOH HOH . C 3 HOH A 155 404 91 HOH HOH . C 3 HOH A 156 405 92 HOH HOH . C 3 HOH A 157 406 93 HOH HOH . C 3 HOH A 158 407 94 HOH HOH . C 3 HOH A 159 408 95 HOH HOH . C 3 HOH A 160 409 96 HOH HOH . C 3 HOH A 161 410 97 HOH HOH . C 3 HOH A 162 411 98 HOH HOH . C 3 HOH A 163 412 99 HOH HOH . C 3 HOH A 164 413 100 HOH HOH . C 3 HOH A 165 414 101 HOH HOH . C 3 HOH A 166 415 102 HOH HOH . C 3 HOH A 167 416 104 HOH HOH . C 3 HOH A 168 417 105 HOH HOH . C 3 HOH A 169 418 106 HOH HOH . C 3 HOH A 170 419 107 HOH HOH . C 3 HOH A 171 420 108 HOH HOH . C 3 HOH A 172 421 109 HOH HOH . C 3 HOH A 173 422 110 HOH HOH . C 3 HOH A 174 423 111 HOH HOH . C 3 HOH A 175 424 112 HOH HOH . C 3 HOH A 176 425 113 HOH HOH . C 3 HOH A 177 426 114 HOH HOH . C 3 HOH A 178 427 115 HOH HOH . C 3 HOH A 179 428 116 HOH HOH . C 3 HOH A 180 429 117 HOH HOH . C 3 HOH A 181 430 118 HOH HOH . C 3 HOH A 182 431 120 HOH HOH . C 3 HOH A 183 432 121 HOH HOH . C 3 HOH A 184 433 122 HOH HOH . C 3 HOH A 185 434 123 HOH HOH . C 3 HOH A 186 435 124 HOH HOH . C 3 HOH A 187 436 125 HOH HOH . C 3 HOH A 188 437 126 HOH HOH . C 3 HOH A 189 438 127 HOH HOH . C 3 HOH A 190 439 128 HOH HOH . C 3 HOH A 191 440 129 HOH HOH . C 3 HOH A 192 441 130 HOH HOH . C 3 HOH A 193 442 131 HOH HOH . C 3 HOH A 194 443 132 HOH HOH . C 3 HOH A 195 444 133 HOH HOH . C 3 HOH A 196 445 134 HOH HOH . C 3 HOH A 197 446 135 HOH HOH . C 3 HOH A 198 447 136 HOH HOH . C 3 HOH A 199 448 137 HOH HOH . C 3 HOH A 200 449 139 HOH HOH . C 3 HOH A 201 450 140 HOH HOH . C 3 HOH A 202 451 141 HOH HOH . C 3 HOH A 203 452 142 HOH HOH . C 3 HOH A 204 453 143 HOH HOH . C 3 HOH A 205 454 144 HOH HOH . C 3 HOH A 206 455 145 HOH HOH . C 3 HOH A 207 456 146 HOH HOH . C 3 HOH A 208 457 148 HOH HOH . C 3 HOH A 209 458 149 HOH HOH . C 3 HOH A 210 459 150 HOH HOH . C 3 HOH A 211 460 151 HOH HOH . C 3 HOH A 212 461 152 HOH HOH . C 3 HOH A 213 462 154 HOH HOH . C 3 HOH A 214 463 155 HOH HOH . C 3 HOH A 215 464 156 HOH HOH . C 3 HOH A 216 465 157 HOH HOH . C 3 HOH A 217 466 158 HOH HOH . C 3 HOH A 218 467 159 HOH HOH . C 3 HOH A 219 468 161 HOH HOH . C 3 HOH A 220 469 162 HOH HOH . C 3 HOH A 221 470 163 HOH HOH . C 3 HOH A 222 471 164 HOH HOH . C 3 HOH A 223 472 165 HOH HOH . C 3 HOH A 224 473 166 HOH HOH . C 3 HOH A 225 474 167 HOH HOH . C 3 HOH A 226 475 168 HOH HOH . C 3 HOH A 227 476 169 HOH HOH . C 3 HOH A 228 477 170 HOH HOH . C 3 HOH A 229 478 171 HOH HOH . C 3 HOH A 230 479 172 HOH HOH . C 3 HOH A 231 480 173 HOH HOH . C 3 HOH A 232 481 175 HOH HOH . C 3 HOH A 233 482 176 HOH HOH . C 3 HOH A 234 483 177 HOH HOH . C 3 HOH A 235 484 178 HOH HOH . C 3 HOH A 236 485 179 HOH HOH . C 3 HOH A 237 486 180 HOH HOH . C 3 HOH A 238 487 182 HOH HOH . C 3 HOH A 239 488 183 HOH HOH . C 3 HOH A 240 489 184 HOH HOH . C 3 HOH A 241 490 185 HOH HOH . C 3 HOH A 242 491 186 HOH HOH . C 3 HOH A 243 492 187 HOH HOH . C 3 HOH A 244 493 188 HOH HOH . C 3 HOH A 245 494 189 HOH HOH . C 3 HOH A 246 495 190 HOH HOH . C 3 HOH A 247 496 191 HOH HOH . C 3 HOH A 248 497 192 HOH HOH . C 3 HOH A 249 498 193 HOH HOH . C 3 HOH A 250 499 194 HOH HOH . C 3 HOH A 251 500 195 HOH HOH . C 3 HOH A 252 501 196 HOH HOH . C 3 HOH A 253 502 197 HOH HOH . C 3 HOH A 254 503 198 HOH HOH . C 3 HOH A 255 504 199 HOH HOH . C 3 HOH A 256 505 200 HOH HOH . C 3 HOH A 257 506 201 HOH HOH . C 3 HOH A 258 507 202 HOH HOH . C 3 HOH A 259 508 203 HOH HOH . C 3 HOH A 260 509 204 HOH HOH . C 3 HOH A 261 510 205 HOH HOH . C 3 HOH A 262 511 206 HOH HOH . C 3 HOH A 263 512 207 HOH HOH . C 3 HOH A 264 513 208 HOH HOH . C 3 HOH A 265 514 209 HOH HOH . C 3 HOH A 266 515 211 HOH HOH . C 3 HOH A 267 516 212 HOH HOH . C 3 HOH A 268 517 213 HOH HOH . C 3 HOH A 269 518 214 HOH HOH . C 3 HOH A 270 519 215 HOH HOH . C 3 HOH A 271 520 217 HOH HOH . C 3 HOH A 272 521 219 HOH HOH . C 3 HOH A 273 522 221 HOH HOH . C 3 HOH A 274 523 223 HOH HOH . C 3 HOH A 275 524 224 HOH HOH . C 3 HOH A 276 525 225 HOH HOH . C 3 HOH A 277 526 226 HOH HOH . C 3 HOH A 278 527 227 HOH HOH . C 3 HOH A 279 528 228 HOH HOH . C 3 HOH A 280 529 229 HOH HOH . C 3 HOH A 281 530 232 HOH HOH . C 3 HOH A 282 531 233 HOH HOH . C 3 HOH A 283 532 234 HOH HOH . C 3 HOH A 284 533 235 HOH HOH . C 3 HOH A 285 534 238 HOH HOH . C 3 HOH A 286 535 239 HOH HOH . C 3 HOH A 287 536 240 HOH HOH . C 3 HOH A 288 537 241 HOH HOH . C 3 HOH A 289 538 243 HOH HOH . C 3 HOH A 290 539 244 HOH HOH . C 3 HOH A 291 540 245 HOH HOH . C 3 HOH A 292 541 246 HOH HOH . C 3 HOH A 293 542 249 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 B85 . . . B 2 1.481 15.761 19.469 1 12.67 ? C1 B85 249 A 1 HETATM 2 C C2 B85 . . . B 2 2.06 17.06 19.42 1 11.86 ? C2 B85 249 A 1 HETATM 3 C C3 B85 . . . B 2 2.397 17.615 18.207 1 12.19 ? C3 B85 249 A 1 HETATM 4 C C4 B85 . . . B 2 2.192 16.867 16.948 1 12.9 ? C4 B85 249 A 1 HETATM 5 C C5 B85 . . . B 2 1.641 15.599 16.99 1 11.83 ? C5 B85 249 A 1 HETATM 6 C C6 B85 . . . B 2 1.286 15.037 18.258 1 12.68 ? C6 B85 249 A 1 HETATM 7 C C7 B85 . . . B 2 0.767 13.62 18.443 1 16.34 ? C7 B85 249 A 1 HETATM 8 P P8 B85 . . . B 2 0.385 12.618 16.952 1 12.46 ? P8 B85 249 A 1 HETATM 9 O O9 B85 . . . B 2 1.667 12.368 16.044 1 13.44 ? O9 B85 249 A 1 HETATM 10 O O10 B85 . . . B 2 -0.305 11.225 17.373 1 12.84 ? O10 B85 249 A 1 HETATM 11 O O11 B85 . . . B 2 -0.631 13.377 16.171 1 16.6 ? O11 B85 249 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 11 #