data_3IPB
#
_model_server_result.job_id            Md0rLe81PMRnMV1JW6c8zg 
_model_server_result.datetime_utc      '2024-11-22 09:27:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ipb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":128}' 
#
_entry.id    3IPB 
#
_exptl.entry_id    3IPB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              748.519 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2,2'-{undecane-1,11-diylbis[oxy(3,5-dichlorobenzene-4,1-diyl)imino]}dibenzoic acid" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3IPB 
_cell.length_a            42.958 
_cell.length_b            84.681 
_cell.length_c            62.769 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3IPB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 42.958 84.681 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C37 H38 Cl4 N2 O6' 
_chem_comp.formula_weight    748.519 
_chem_comp.id                JZD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2,2'-{undecane-1,11-diylbis[oxy(3,5-dichlorobenzene-4,1-diyl)imino]}dibenzoic acid" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAA CBJ JZD doub 154 n n 
OAB CBK JZD doub 155 n n 
OAC HOAC JZD sing 156 n n 
OAD HOAD JZD sing 157 n n 
CLAE CBN JZD sing 158 n n 
CLAF CBO JZD sing 159 n n 
CAI CAK JZD sing 160 n y 
CAI HAI JZD sing 161 n n 
CAJ CAN JZD sing 162 n y 
CAJ HAJ JZD sing 163 n n 
CAK HAK JZD sing 164 n n 
CAL CAJ JZD doub 165 n y 
CAL HAL JZD sing 166 n n 
CAM CAI JZD doub 167 n y 
CAM HAM JZD sing 168 n n 
CAN HAN JZD sing 169 n n 
CAO CAK JZD doub 170 n y 
CAO HAO JZD sing 171 n n 
CAP CAL JZD sing 172 n y 
CAP CBU JZD doub 173 n y 
CAP HAP JZD sing 174 n n 
CAQ CBL JZD sing 175 n y 
CAQ HAQ JZD sing 176 n n 
CAR CBL JZD doub 177 n y 
CAR HAR JZD sing 178 n n 
CAS CBP JZD sing 179 n y 
CAS HAS JZD sing 180 n n 
CAT CBQ JZD doub 181 n y 
CAT HAT JZD sing 182 n n 
CAU CAV JZD sing 183 n n 
CAU HAU JZD sing 184 n n 
CAU HAUA JZD sing 185 n n 
CAV CAX JZD sing 186 n n 
CAV HAV JZD sing 187 n n 
CAV HAVA JZD sing 188 n n 
CAW CAU JZD sing 189 n n 
CAW HAW JZD sing 190 n n 
CAX CAZ JZD sing 191 n n 
CAX HAX JZD sing 192 n n 
CAX HAXA JZD sing 193 n n 
CAY CAW JZD sing 194 n n 
CAY HAY JZD sing 195 n n 
CAZ CBB JZD sing 196 n n 
CAZ HAZ JZD sing 197 n n 
CAZ HAZA JZD sing 198 n n 
CBA CAY JZD sing 199 n n 
CBA HBA JZD sing 200 n n 
CBA HBAA JZD sing 201 n n 
CBB CBD JZD sing 202 n n 
CBB HBB JZD sing 203 n n 
CBB HBBA JZD sing 204 n n 
CBC CBA JZD sing 205 n n 
CBC HBC JZD sing 206 n n 
CBC HBCA JZD sing 207 n n 
CBD OBH JZD sing 208 n n 
CBD HBD JZD sing 209 n n 
CBD HBDA JZD sing 210 n n 
CBE CBC JZD sing 211 n n 
CBE HBE JZD sing 212 n n 
CBE HBEA JZD sing 213 n n 
NBF CBR JZD sing 214 n n 
NBF HNBF JZD sing 215 n n 
NBG CBM JZD sing 216 n n 
NBG HNBG JZD sing 217 n n 
OBH CBV JZD sing 218 n n 
OBI CBE JZD sing 219 n n 
CBJ OAC JZD sing 220 n n 
CBJ CBT JZD sing 221 n n 
CBK OAD JZD sing 222 n n 
CBK CBU JZD sing 223 n n 
CBL NBF JZD sing 224 n n 
CBM CAS JZD doub 225 n y 
CBM CAT JZD sing 226 n y 
CBN CAQ JZD doub 227 n y 
CBO CAR JZD sing 228 n y 
CBP CLAG JZD sing 229 n n 
CBP CBW JZD doub 230 n y 
CBQ CLAH JZD sing 231 n n 
CBQ CBW JZD sing 232 n y 
CBR CAM JZD sing 233 n y 
CBR CBT JZD doub 234 n y 
CBS CAN JZD doub 235 n y 
CBS NBG JZD sing 236 n n 
CBT CAO JZD sing 237 n y 
CBU CBS JZD sing 238 n y 
CBV CBN JZD sing 239 n y 
CBV CBO JZD doub 240 n y 
CBW OBI JZD sing 241 n n 
CAW H37 JZD sing 242 n n 
CAY H38 JZD sing 243 n n 
#
_atom_sites.entry_id                     3IPB 
_atom_sites.fract_transf_matrix[1][1]    0.023279 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011809 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015931 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 JZD A 1 128 128 JZD JZD . 
D 2 JZD B 1 129 129 JZD JZD . 
E 3 HOH A 1 130 130 HOH HOH . 
E 3 HOH A 2 131 131 HOH HOH . 
E 3 HOH A 3 132 132 HOH HOH . 
E 3 HOH A 4 133 133 HOH HOH . 
E 3 HOH A 5 134 134 HOH HOH . 
E 3 HOH A 6 135 135 HOH HOH . 
E 3 HOH A 7 136 136 HOH HOH . 
E 3 HOH A 8 137 137 HOH HOH . 
E 3 HOH A 9 138 138 HOH HOH . 
E 3 HOH A 10 139 139 HOH HOH . 
E 3 HOH A 11 140 140 HOH HOH . 
E 3 HOH A 12 141 141 HOH HOH . 
E 3 HOH A 13 143 143 HOH HOH . 
E 3 HOH A 14 144 144 HOH HOH . 
E 3 HOH A 15 145 145 HOH HOH . 
E 3 HOH A 16 146 146 HOH HOH . 
E 3 HOH A 17 147 147 HOH HOH . 
E 3 HOH A 18 148 148 HOH HOH . 
E 3 HOH A 19 149 149 HOH HOH . 
E 3 HOH A 20 150 150 HOH HOH . 
E 3 HOH A 21 151 151 HOH HOH . 
E 3 HOH A 22 152 152 HOH HOH . 
E 3 HOH A 23 153 153 HOH HOH . 
E 3 HOH A 24 154 154 HOH HOH . 
E 3 HOH A 25 155 155 HOH HOH . 
E 3 HOH A 26 156 156 HOH HOH . 
E 3 HOH A 27 157 157 HOH HOH . 
E 3 HOH A 28 158 158 HOH HOH . 
E 3 HOH A 29 159 159 HOH HOH . 
E 3 HOH A 30 160 160 HOH HOH . 
E 3 HOH A 31 161 161 HOH HOH . 
E 3 HOH A 32 162 162 HOH HOH . 
E 3 HOH A 33 163 163 HOH HOH . 
E 3 HOH A 34 164 164 HOH HOH . 
E 3 HOH A 35 166 166 HOH HOH . 
E 3 HOH A 36 167 167 HOH HOH . 
F 3 HOH B 1 128 128 HOH HOH . 
F 3 HOH B 2 130 130 HOH HOH . 
F 3 HOH B 3 131 131 HOH HOH . 
F 3 HOH B 4 132 132 HOH HOH . 
F 3 HOH B 5 133 133 HOH HOH . 
F 3 HOH B 6 134 134 HOH HOH . 
F 3 HOH B 7 135 135 HOH HOH . 
F 3 HOH B 8 136 136 HOH HOH . 
F 3 HOH B 9 137 137 HOH HOH . 
F 3 HOH B 10 138 138 HOH HOH . 
F 3 HOH B 11 139 139 HOH HOH . 
F 3 HOH B 12 140 140 HOH HOH . 
F 3 HOH B 13 141 141 HOH HOH . 
F 3 HOH B 14 142 142 HOH HOH . 
F 3 HOH B 15 143 143 HOH HOH . 
F 3 HOH B 16 144 144 HOH HOH . 
F 3 HOH B 17 145 145 HOH HOH . 
F 3 HOH B 18 146 146 HOH HOH . 
F 3 HOH B 19 147 147 HOH HOH . 
F 3 HOH B 20 148 148 HOH HOH . 
F 3 HOH B 21 149 149 HOH HOH . 
F 3 HOH B 22 150 142 HOH HOH . 
F 3 HOH B 23 151 151 HOH HOH . 
F 3 HOH B 24 165 165 HOH HOH . 
F 3 HOH B 25 166 166 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAA JZD . A . C 2 19.026 45.384 64.031 0.25 46.66 ? OAA JZD 128 A 1 
HETATM 2 O OAB JZD . A . C 2 23.292 43.281 33.382 0.25 50.46 ? OAB JZD 128 A 1 
HETATM 3 O OAC JZD . A . C 2 18.852 43.689 65.462 0.25 46.28 ? OAC JZD 128 A 1 
HETATM 4 O OAD JZD . A . C 2 23.345 43.868 35.536 0.25 51.53 ? OAD JZD 128 A 1 
HETATM 5 CL CLAE JZD . A . C 2 19.854 43.885 58.897 0.25 57 ? CLAE JZD 128 A 1 
HETATM 6 CL CLAF JZD . A . C 2 23.896 40.309 60.276 0.25 50.05 ? CLAF JZD 128 A 1 
HETATM 7 CL CLAG JZD . A . C 2 21.955 45.074 41.606 0.25 31.89 ? CLAG JZD 128 A 1 
HETATM 8 CL CLAH JZD . A . C 2 20.897 39.619 41.438 0.25 31.02 ? CLAH JZD 128 A 1 
HETATM 9 C CAI JZD . A . C 2 23.751 44.003 64.952 0.25 49.51 ? CAI JZD 128 A 1 
HETATM 10 C CAJ JZD . A . C 2 19.392 40.825 35.307 0.25 48.15 ? CAJ JZD 128 A 1 
HETATM 11 C CAK JZD . A . C 2 23.086 45.069 65.516 0.25 49.45 ? CAK JZD 128 A 1 
HETATM 12 C CAL JZD . A . C 2 19.724 41.192 34.006 0.25 48.19 ? CAL JZD 128 A 1 
HETATM 13 C CAM JZD . A . C 2 23.007 43.057 64.28 0.25 49.59 ? CAM JZD 128 A 1 
HETATM 14 C CAN JZD . A . C 2 20.173 41.234 36.391 0.25 46.82 ? CAN JZD 128 A 1 
HETATM 15 C CAO JZD . A . C 2 21.715 45.241 65.459 0.25 49.49 ? CAO JZD 128 A 1 
HETATM 16 C CAP JZD . A . C 2 20.851 41.979 33.8 0.25 47.32 ? CAP JZD 128 A 1 
HETATM 17 C CAQ JZD . A . C 2 20.478 43.014 61.349 0.25 53.66 ? CAQ JZD 128 A 1 
HETATM 18 C CAR JZD . A . C 2 22.224 41.474 61.842 0.25 52.44 ? CAR JZD 128 A 1 
HETATM 19 C CAS JZD . A . C 2 21.968 43.518 39.386 0.25 37.11 ? CAS JZD 128 A 1 
HETATM 20 C CAT JZD . A . C 2 21.54 41.168 39.272 0.25 36 ? CAT JZD 128 A 1 
HETATM 21 C CAU JZD . A . C 2 21.218 42.512 50.582 0.25 40.01 ? CAU JZD 128 A 1 
HETATM 22 C CAV JZD . A . C 2 21.432 41.659 51.897 0.25 40.92 ? CAV JZD 128 A 1 
HETATM 23 C CAW JZD . A . C 2 22.043 42.077 49.323 0.25 35.51 ? CAW JZD 128 A 1 
HETATM 24 C CAX JZD . A . C 2 21.425 42.51 53.203 0.25 43.3 ? CAX JZD 128 A 1 
HETATM 25 C CAY JZD . A . C 2 21.405 42.371 47.948 0.25 36.35 ? CAY JZD 128 A 1 
HETATM 26 C CAZ JZD . A . C 2 21.15 41.696 54.498 0.25 44.75 ? CAZ JZD 128 A 1 
HETATM 27 C CBA JZD . A . C 2 22.268 42.037 46.643 0.25 35.43 ? CBA JZD 128 A 1 
HETATM 28 C CBB JZD . A . C 2 21.542 42.51 55.771 0.25 46.7 ? CBB JZD 128 A 1 
HETATM 29 C CBC JZD . A . C 2 21.395 42.26 45.337 0.25 33.04 ? CBC JZD 128 A 1 
HETATM 30 C CBD JZD . A . C 2 21.087 41.932 57.153 0.25 47.9 ? CBD JZD 128 A 1 
HETATM 31 C CBE JZD . A . C 2 22.117 42.473 43.965 0.25 34.01 ? CBE JZD 128 A 1 
HETATM 32 N NBF JZD . A . C 2 20.932 42.317 63.556 0.25 51.27 ? NBF JZD 128 A 1 
HETATM 33 N NBG JZD . A . C 2 22.09 42.445 37.247 0.25 42.57 ? NBG JZD 128 A 1 
HETATM 34 O OBH JZD . A . C 2 22.149 42.071 58.182 0.25 48.42 ? OBH JZD 128 A 1 
HETATM 35 O OBI JZD . A . C 2 21.199 42.235 42.794 0.25 32.8 ? OBI JZD 128 A 1 
HETATM 36 C CBJ JZD . A . C 2 19.501 44.465 64.732 0.25 47.73 ? CBJ JZD 128 A 1 
HETATM 37 C CBK JZD . A . C 2 22.85 43.248 34.567 0.25 49.18 ? CBK JZD 128 A 1 
HETATM 38 C CBL JZD . A . C 2 21.191 42.267 62.269 0.25 51.84 ? CBL JZD 128 A 1 
HETATM 39 C CBM JZD . A . C 2 21.845 42.361 38.598 0.25 38.85 ? CBM JZD 128 A 1 
HETATM 40 C CBN JZD . A . C 2 20.793 42.938 59.99 0.25 53.47 ? CBN JZD 128 A 1 
HETATM 41 C CBO JZD . A . C 2 22.562 41.386 60.505 0.25 51.66 ? CBO JZD 128 A 1 
HETATM 42 C CBP JZD . A . C 2 21.765 43.54 40.77 0.25 34.51 ? CBP JZD 128 A 1 
HETATM 43 C CBQ JZD . A . C 2 21.318 41.137 40.659 0.25 33.82 ? CBQ JZD 128 A 1 
HETATM 44 C CBR JZD . A . C 2 21.631 43.212 64.215 0.25 50.06 ? CBR JZD 128 A 1 
HETATM 45 C CBS JZD . A . C 2 21.304 42.026 36.203 0.25 45.95 ? CBS JZD 128 A 1 
HETATM 46 C CBT JZD . A . C 2 20.993 44.299 64.783 0.25 48.68 ? CBT JZD 128 A 1 
HETATM 47 C CBU JZD . A . C 2 21.628 42.391 34.878 0.25 46.92 ? CBU JZD 128 A 1 
HETATM 48 C CBV JZD . A . C 2 21.839 42.119 59.527 0.25 51.92 ? CBV JZD 128 A 1 
HETATM 49 C CBW JZD . A . C 2 21.451 42.321 41.428 0.25 34.12 ? CBW JZD 128 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           49 
#