data_3IPB
#
_model_server_result.job_id            1HVoUptukzjOu_pprulc2w 
_model_server_result.datetime_utc      '2024-11-22 09:18:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ipb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":129}' 
#
_entry.id    3IPB 
#
_exptl.entry_id    3IPB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              748.519 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2,2'-{undecane-1,11-diylbis[oxy(3,5-dichlorobenzene-4,1-diyl)imino]}dibenzoic acid" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3IPB 
_cell.length_a            42.958 
_cell.length_b            84.681 
_cell.length_c            62.769 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3IPB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 42.958 84.681 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C37 H38 Cl4 N2 O6' 
_chem_comp.formula_weight    748.519 
_chem_comp.id                JZD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2,2'-{undecane-1,11-diylbis[oxy(3,5-dichlorobenzene-4,1-diyl)imino]}dibenzoic acid" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAA CBJ JZD doub 154 n n 
OAB CBK JZD doub 155 n n 
OAC HOAC JZD sing 156 n n 
OAD HOAD JZD sing 157 n n 
CLAE CBN JZD sing 158 n n 
CLAF CBO JZD sing 159 n n 
CAI CAK JZD sing 160 n y 
CAI HAI JZD sing 161 n n 
CAJ CAN JZD sing 162 n y 
CAJ HAJ JZD sing 163 n n 
CAK HAK JZD sing 164 n n 
CAL CAJ JZD doub 165 n y 
CAL HAL JZD sing 166 n n 
CAM CAI JZD doub 167 n y 
CAM HAM JZD sing 168 n n 
CAN HAN JZD sing 169 n n 
CAO CAK JZD doub 170 n y 
CAO HAO JZD sing 171 n n 
CAP CAL JZD sing 172 n y 
CAP CBU JZD doub 173 n y 
CAP HAP JZD sing 174 n n 
CAQ CBL JZD sing 175 n y 
CAQ HAQ JZD sing 176 n n 
CAR CBL JZD doub 177 n y 
CAR HAR JZD sing 178 n n 
CAS CBP JZD sing 179 n y 
CAS HAS JZD sing 180 n n 
CAT CBQ JZD doub 181 n y 
CAT HAT JZD sing 182 n n 
CAU CAV JZD sing 183 n n 
CAU HAU JZD sing 184 n n 
CAU HAUA JZD sing 185 n n 
CAV CAX JZD sing 186 n n 
CAV HAV JZD sing 187 n n 
CAV HAVA JZD sing 188 n n 
CAW CAU JZD sing 189 n n 
CAW HAW JZD sing 190 n n 
CAX CAZ JZD sing 191 n n 
CAX HAX JZD sing 192 n n 
CAX HAXA JZD sing 193 n n 
CAY CAW JZD sing 194 n n 
CAY HAY JZD sing 195 n n 
CAZ CBB JZD sing 196 n n 
CAZ HAZ JZD sing 197 n n 
CAZ HAZA JZD sing 198 n n 
CBA CAY JZD sing 199 n n 
CBA HBA JZD sing 200 n n 
CBA HBAA JZD sing 201 n n 
CBB CBD JZD sing 202 n n 
CBB HBB JZD sing 203 n n 
CBB HBBA JZD sing 204 n n 
CBC CBA JZD sing 205 n n 
CBC HBC JZD sing 206 n n 
CBC HBCA JZD sing 207 n n 
CBD OBH JZD sing 208 n n 
CBD HBD JZD sing 209 n n 
CBD HBDA JZD sing 210 n n 
CBE CBC JZD sing 211 n n 
CBE HBE JZD sing 212 n n 
CBE HBEA JZD sing 213 n n 
NBF CBR JZD sing 214 n n 
NBF HNBF JZD sing 215 n n 
NBG CBM JZD sing 216 n n 
NBG HNBG JZD sing 217 n n 
OBH CBV JZD sing 218 n n 
OBI CBE JZD sing 219 n n 
CBJ OAC JZD sing 220 n n 
CBJ CBT JZD sing 221 n n 
CBK OAD JZD sing 222 n n 
CBK CBU JZD sing 223 n n 
CBL NBF JZD sing 224 n n 
CBM CAS JZD doub 225 n y 
CBM CAT JZD sing 226 n y 
CBN CAQ JZD doub 227 n y 
CBO CAR JZD sing 228 n y 
CBP CLAG JZD sing 229 n n 
CBP CBW JZD doub 230 n y 
CBQ CLAH JZD sing 231 n n 
CBQ CBW JZD sing 232 n y 
CBR CAM JZD sing 233 n y 
CBR CBT JZD doub 234 n y 
CBS CAN JZD doub 235 n y 
CBS NBG JZD sing 236 n n 
CBT CAO JZD sing 237 n y 
CBU CBS JZD sing 238 n y 
CBV CBN JZD sing 239 n y 
CBV CBO JZD doub 240 n y 
CBW OBI JZD sing 241 n n 
CAW H37 JZD sing 242 n n 
CAY H38 JZD sing 243 n n 
#
_atom_sites.entry_id                     3IPB 
_atom_sites.fract_transf_matrix[1][1]    0.023279 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011809 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015931 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 JZD A 1 128 128 JZD JZD . 
D 2 JZD B 1 129 129 JZD JZD . 
E 3 HOH A 1 130 130 HOH HOH . 
E 3 HOH A 2 131 131 HOH HOH . 
E 3 HOH A 3 132 132 HOH HOH . 
E 3 HOH A 4 133 133 HOH HOH . 
E 3 HOH A 5 134 134 HOH HOH . 
E 3 HOH A 6 135 135 HOH HOH . 
E 3 HOH A 7 136 136 HOH HOH . 
E 3 HOH A 8 137 137 HOH HOH . 
E 3 HOH A 9 138 138 HOH HOH . 
E 3 HOH A 10 139 139 HOH HOH . 
E 3 HOH A 11 140 140 HOH HOH . 
E 3 HOH A 12 141 141 HOH HOH . 
E 3 HOH A 13 143 143 HOH HOH . 
E 3 HOH A 14 144 144 HOH HOH . 
E 3 HOH A 15 145 145 HOH HOH . 
E 3 HOH A 16 146 146 HOH HOH . 
E 3 HOH A 17 147 147 HOH HOH . 
E 3 HOH A 18 148 148 HOH HOH . 
E 3 HOH A 19 149 149 HOH HOH . 
E 3 HOH A 20 150 150 HOH HOH . 
E 3 HOH A 21 151 151 HOH HOH . 
E 3 HOH A 22 152 152 HOH HOH . 
E 3 HOH A 23 153 153 HOH HOH . 
E 3 HOH A 24 154 154 HOH HOH . 
E 3 HOH A 25 155 155 HOH HOH . 
E 3 HOH A 26 156 156 HOH HOH . 
E 3 HOH A 27 157 157 HOH HOH . 
E 3 HOH A 28 158 158 HOH HOH . 
E 3 HOH A 29 159 159 HOH HOH . 
E 3 HOH A 30 160 160 HOH HOH . 
E 3 HOH A 31 161 161 HOH HOH . 
E 3 HOH A 32 162 162 HOH HOH . 
E 3 HOH A 33 163 163 HOH HOH . 
E 3 HOH A 34 164 164 HOH HOH . 
E 3 HOH A 35 166 166 HOH HOH . 
E 3 HOH A 36 167 167 HOH HOH . 
F 3 HOH B 1 128 128 HOH HOH . 
F 3 HOH B 2 130 130 HOH HOH . 
F 3 HOH B 3 131 131 HOH HOH . 
F 3 HOH B 4 132 132 HOH HOH . 
F 3 HOH B 5 133 133 HOH HOH . 
F 3 HOH B 6 134 134 HOH HOH . 
F 3 HOH B 7 135 135 HOH HOH . 
F 3 HOH B 8 136 136 HOH HOH . 
F 3 HOH B 9 137 137 HOH HOH . 
F 3 HOH B 10 138 138 HOH HOH . 
F 3 HOH B 11 139 139 HOH HOH . 
F 3 HOH B 12 140 140 HOH HOH . 
F 3 HOH B 13 141 141 HOH HOH . 
F 3 HOH B 14 142 142 HOH HOH . 
F 3 HOH B 15 143 143 HOH HOH . 
F 3 HOH B 16 144 144 HOH HOH . 
F 3 HOH B 17 145 145 HOH HOH . 
F 3 HOH B 18 146 146 HOH HOH . 
F 3 HOH B 19 147 147 HOH HOH . 
F 3 HOH B 20 148 148 HOH HOH . 
F 3 HOH B 21 149 149 HOH HOH . 
F 3 HOH B 22 150 142 HOH HOH . 
F 3 HOH B 23 151 151 HOH HOH . 
F 3 HOH B 24 165 165 HOH HOH . 
F 3 HOH B 25 166 166 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAA JZD . B . D 2 20.405 43.582 59.103 0.25 34.97 ? OAA JZD 129 B 1 
HETATM 2 O OAB JZD . B . D 2 23.97 45.16 30.202 0.25 40.78 ? OAB JZD 129 B 1 
HETATM 3 O OAC JZD . B . D 2 20.515 42.479 61.032 0.25 36.89 ? OAC JZD 129 B 1 
HETATM 4 O OAD JZD . B . D 2 22.092 46.062 30.938 0.25 41.18 ? OAD JZD 129 B 1 
HETATM 5 CL CLAE JZD . B . D 2 21.321 44.921 52.767 0.25 35.42 ? CLAE JZD 129 B 1 
HETATM 6 CL CLAF JZD . B . D 2 21.996 39.389 52.801 0.25 28 ? CLAF JZD 129 B 1 
HETATM 7 CL CLAG JZD . B . D 2 23.622 44.577 34.73 0.25 52.61 ? CLAG JZD 129 B 1 
HETATM 8 CL CLAH JZD . B . D 2 19.086 41.317 34.07 0.25 51.57 ? CLAH JZD 129 B 1 
HETATM 9 C CAI JZD . B . D 2 23.904 40.05 58.42 0.25 33.22 ? CAI JZD 129 B 1 
HETATM 10 C CAJ JZD . B . D 2 20.573 42.892 27.344 0.25 41.93 ? CAJ JZD 129 B 1 
HETATM 11 C CAK JZD . B . D 2 23.724 40.227 59.792 0.25 33.34 ? CAK JZD 129 B 1 
HETATM 12 C CAL JZD . B . D 2 20.724 44.255 27.159 0.25 41.15 ? CAL JZD 129 B 1 
HETATM 13 C CAM JZD . B . D 2 23.096 40.728 57.491 0.25 32.73 ? CAM JZD 129 B 1 
HETATM 14 C CAN JZD . B . D 2 21.128 42.303 28.471 0.25 44.58 ? CAN JZD 129 B 1 
HETATM 15 C CAO JZD . B . D 2 22.724 41.092 60.201 0.25 32.87 ? CAO JZD 129 B 1 
HETATM 16 C CAP JZD . B . D 2 21.421 45.014 28.097 0.25 41.27 ? CAP JZD 129 B 1 
HETATM 17 C CAQ JZD . B . D 2 21.328 43.35 54.907 0.25 33.78 ? CAQ JZD 129 B 1 
HETATM 18 C CAR JZD . B . D 2 21.612 40.978 54.99 0.25 32.71 ? CAR JZD 129 B 1 
HETATM 19 C CAS JZD . B . D 2 22.822 43.372 32.549 0.25 49.5 ? CAS JZD 129 B 1 
HETATM 20 C CAT JZD . B . D 2 20.896 41.993 32.28 0.25 49.72 ? CAT JZD 129 B 1 
HETATM 21 C CAU JZD . B . D 2 21.473 42.572 43.574 0.25 36.82 ? CAU JZD 129 B 1 
HETATM 22 C CAV JZD . B . D 2 20.784 42.023 44.874 0.25 34.3 ? CAV JZD 129 B 1 
HETATM 23 C CAW JZD . B . D 2 21.216 41.756 42.247 0.25 38.61 ? CAW JZD 129 B 1 
HETATM 24 C CAX JZD . B . D 2 21.492 42.457 46.196 0.25 34.26 ? CAX JZD 129 B 1 
HETATM 25 C CAY JZD . B . D 2 21.497 42.604 40.949 0.25 41.14 ? CAY JZD 129 B 1 
HETATM 26 C CAZ JZD . B . D 2 20.62 42.509 47.537 0.25 32.22 ? CAZ JZD 129 B 1 
HETATM 27 C CBA JZD . B . D 2 21.427 41.852 39.577 0.25 43.26 ? CBA JZD 129 B 1 
HETATM 28 C CBB JZD . B . D 2 21.531 42.285 48.823 0.25 25.11 ? CBB JZD 129 B 1 
HETATM 29 C CBC JZD . B . D 2 21.181 42.827 38.37 0.25 45.07 ? CBC JZD 129 B 1 
HETATM 30 C CBD JZD . B . D 2 20.973 42.549 50.257 0.25 30.24 ? CBD JZD 129 B 1 
HETATM 31 C CBE JZD . B . D 2 21.453 42.259 36.929 0.25 47.36 ? CBE JZD 129 B 1 
HETATM 32 N NBF JZD . B . D 2 21.277 42.269 57.063 0.25 34.29 ? NBF JZD 129 B 1 
HETATM 33 N NBG JZD . B . D 2 22.352 42.405 30.459 0.25 46.78 ? NBG JZD 129 B 1 
HETATM 34 O OBH JZD . B . D 2 21.783 41.951 51.451 0.25 31.97 ? OBH JZD 129 B 1 
HETATM 35 O OBI JZD . B . D 2 21.03 43.172 35.807 0.25 48.57 ? OBI JZD 129 B 1 
HETATM 36 C CBJ JZD . B . D 2 20.849 42.687 59.84 0.25 35.58 ? CBJ JZD 129 B 1 
HETATM 37 C CBK JZD . B . D 2 22.736 45.278 30.207 0.25 41.25 ? CBK JZD 129 B 1 
HETATM 38 C CBL JZD . B . D 2 21.408 42.185 55.685 0.25 34.13 ? CBL JZD 129 B 1 
HETATM 39 C CBM JZD . B . D 2 22.02 42.599 31.734 0.25 49 ? CBM JZD 129 B 1 
HETATM 40 C CBN JZD . B . D 2 21.45 43.35 53.517 0.25 34 ? CBN JZD 129 B 1 
HETATM 41 C CBO JZD . B . D 2 21.728 40.932 53.596 0.25 32.15 ? CBO JZD 129 B 1 
HETATM 42 C CBP JZD . B . D 2 22.493 43.56 33.89 0.25 50.59 ? CBP JZD 129 B 1 
HETATM 43 C CBQ JZD . B . D 2 20.545 42.162 33.618 0.25 49.85 ? CBQ JZD 129 B 1 
HETATM 44 C CBR JZD . B . D 2 22.09 41.602 57.914 0.25 33.41 ? CBR JZD 129 B 1 
HETATM 45 C CBS JZD . B . D 2 21.822 43.054 29.424 0.25 44.59 ? CBS JZD 129 B 1 
HETATM 46 C CBT JZD . B . D 2 21.924 41.765 59.278 0.25 33.84 ? CBT JZD 129 B 1 
HETATM 47 C CBU JZD . B . D 2 21.978 44.419 29.222 0.25 41.91 ? CBU JZD 129 B 1 
HETATM 48 C CBV JZD . B . D 2 21.634 42.116 52.831 0.25 32.95 ? CBV JZD 129 B 1 
HETATM 49 C CBW JZD . B . D 2 21.356 42.949 34.473 0.25 49.17 ? CBW JZD 129 B 1 
#
_model_server_stats.io_time_ms              42 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           49 
#