data_3IPI
#
_model_server_result.job_id            lOIAzhW2JFabx2s-TdoyHQ 
_model_server_result.datetime_utc      '2024-11-28 00:49:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ipi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":309}' 
#
_entry.id    3IPI 
#
_exptl.entry_id    3IPI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              104.061 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONIC ACID' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3IPI 
_cell.length_a            68.16 
_cell.length_b            81.273 
_cell.length_c            49.689 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3IPI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_755 -x+2,-y,z -1 0 0 0 -1 0 0 0 1 136.32 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LYS 32 A LYS 40 1_555 A N MSE 33 A MSE 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C MSE 33 A MSE 41 1_555 A N VAL 34 A VAL 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 A C GLU 72 A GLU 80 1_555 A N MSE 73 A MSE 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 A C MSE 73 A MSE 81 1_555 A N MSE 74 A MSE 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 A C MSE 74 A MSE 82 1_555 A N HIS 75 A HIS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 A C GLY 136 A GLY 144 1_555 A N MSE 137 A MSE 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 A C MSE 137 A MSE 145 1_555 A N ASP 138 A ASP 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale8 A C ASP 138 A ASP 146 1_555 A N MSE 139 A MSE 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale9 A C MSE 139 A MSE 147 1_555 A N ALA 140 A ALA 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale10 A C TYR 232 A TYR 240 1_555 A N MSE 233 A MSE 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale11 A C MSE 233 A MSE 241 1_555 A N LYS 234 A LYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale12 A C ASP 282 A ASP 290 1_555 A N MSE 283 A MSE 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale13 A C MSE 283 A MSE 291 1_555 A N LEU 284 A LEU 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
#
_chem_comp.formula           'C3 H4 O4' 
_chem_comp.formula_weight    104.061 
_chem_comp.id                MLA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1A MLA sing 218 n n 
C1 O1B MLA doub 219 n n 
C1 C2 MLA sing 220 n n 
O1A H1A MLA sing 221 n n 
C2 C3 MLA sing 222 n n 
C2 HC21 MLA sing 223 n n 
C2 HC22 MLA sing 224 n n 
C3 O3A MLA doub 225 n n 
C3 O3B MLA sing 226 n n 
O3B H3B MLA sing 227 n n 
#
_atom_sites.entry_id                     3IPI 
_atom_sites.fract_transf_matrix[1][1]    0.014671 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012304 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020125 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MLA A 1 304 300 MLA MAL . 
C 2 MLA A 1 305 301 MLA MAL . 
D 2 MLA A 1 306 302 MLA MAL . 
E 2 MLA A 1 307 303 MLA MAL . 
F 2 MLA A 1 308 304 MLA MAL . 
G 2 MLA A 1 309 305 MLA MAL . 
H 3 HOH A 1 1 1 HOH TIP . 
H 3 HOH A 2 2 2 HOH TIP . 
H 3 HOH A 3 3 3 HOH TIP . 
H 3 HOH A 4 4 4 HOH TIP . 
H 3 HOH A 5 5 5 HOH TIP . 
H 3 HOH A 6 6 6 HOH TIP . 
H 3 HOH A 7 7 7 HOH TIP . 
H 3 HOH A 8 8 8 HOH TIP . 
H 3 HOH A 9 310 9 HOH TIP . 
H 3 HOH A 10 311 10 HOH TIP . 
H 3 HOH A 11 312 11 HOH TIP . 
H 3 HOH A 12 313 12 HOH TIP . 
H 3 HOH A 13 314 13 HOH TIP . 
H 3 HOH A 14 315 14 HOH TIP . 
H 3 HOH A 15 316 15 HOH TIP . 
H 3 HOH A 16 317 16 HOH TIP . 
H 3 HOH A 17 318 17 HOH TIP . 
H 3 HOH A 18 319 18 HOH TIP . 
H 3 HOH A 19 320 19 HOH TIP . 
H 3 HOH A 20 321 20 HOH TIP . 
H 3 HOH A 21 322 21 HOH TIP . 
H 3 HOH A 22 323 22 HOH TIP . 
H 3 HOH A 23 324 23 HOH TIP . 
H 3 HOH A 24 325 24 HOH TIP . 
H 3 HOH A 25 326 25 HOH TIP . 
H 3 HOH A 26 327 26 HOH TIP . 
H 3 HOH A 27 328 27 HOH TIP . 
H 3 HOH A 28 329 28 HOH TIP . 
H 3 HOH A 29 330 29 HOH TIP . 
H 3 HOH A 30 331 30 HOH TIP . 
H 3 HOH A 31 332 31 HOH TIP . 
H 3 HOH A 32 333 32 HOH TIP . 
H 3 HOH A 33 334 33 HOH TIP . 
H 3 HOH A 34 335 34 HOH TIP . 
H 3 HOH A 35 336 35 HOH TIP . 
H 3 HOH A 36 337 36 HOH TIP . 
H 3 HOH A 37 338 37 HOH TIP . 
H 3 HOH A 38 339 38 HOH TIP . 
H 3 HOH A 39 340 39 HOH TIP . 
H 3 HOH A 40 341 40 HOH TIP . 
H 3 HOH A 41 342 41 HOH TIP . 
H 3 HOH A 42 343 42 HOH TIP . 
H 3 HOH A 43 344 43 HOH TIP . 
H 3 HOH A 44 345 44 HOH TIP . 
H 3 HOH A 45 346 45 HOH TIP . 
H 3 HOH A 46 347 46 HOH TIP . 
H 3 HOH A 47 348 47 HOH TIP . 
H 3 HOH A 48 349 48 HOH TIP . 
H 3 HOH A 49 350 49 HOH TIP . 
H 3 HOH A 50 351 50 HOH TIP . 
H 3 HOH A 51 352 51 HOH TIP . 
H 3 HOH A 52 353 52 HOH TIP . 
H 3 HOH A 53 354 53 HOH TIP . 
H 3 HOH A 54 355 54 HOH TIP . 
H 3 HOH A 55 356 55 HOH TIP . 
H 3 HOH A 56 357 56 HOH TIP . 
H 3 HOH A 57 358 57 HOH TIP . 
H 3 HOH A 58 359 58 HOH TIP . 
H 3 HOH A 59 360 59 HOH TIP . 
H 3 HOH A 60 361 60 HOH TIP . 
H 3 HOH A 61 362 61 HOH TIP . 
H 3 HOH A 62 363 62 HOH TIP . 
H 3 HOH A 63 364 63 HOH TIP . 
H 3 HOH A 64 365 64 HOH TIP . 
H 3 HOH A 65 366 65 HOH TIP . 
H 3 HOH A 66 367 66 HOH TIP . 
H 3 HOH A 67 368 67 HOH TIP . 
H 3 HOH A 68 369 68 HOH TIP . 
H 3 HOH A 69 370 69 HOH TIP . 
H 3 HOH A 70 371 70 HOH TIP . 
H 3 HOH A 71 372 71 HOH TIP . 
H 3 HOH A 72 373 72 HOH TIP . 
H 3 HOH A 73 374 73 HOH TIP . 
H 3 HOH A 74 375 74 HOH TIP . 
H 3 HOH A 75 376 75 HOH TIP . 
H 3 HOH A 76 377 76 HOH TIP . 
H 3 HOH A 77 378 77 HOH TIP . 
H 3 HOH A 78 379 78 HOH TIP . 
H 3 HOH A 79 380 79 HOH TIP . 
H 3 HOH A 80 381 80 HOH TIP . 
H 3 HOH A 81 382 81 HOH TIP . 
H 3 HOH A 82 383 82 HOH TIP . 
H 3 HOH A 83 384 83 HOH TIP . 
H 3 HOH A 84 385 84 HOH TIP . 
H 3 HOH A 85 386 85 HOH TIP . 
H 3 HOH A 86 387 86 HOH TIP . 
H 3 HOH A 87 388 87 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLA . . . G 2 70.951 22.054 8.545 1 44.57 ? C1 MLA 309 A 1 
HETATM 2 O O1A MLA . . . G 2 70.064 21.317 8.155 1 46.78 ? O1A MLA 309 A 1 
HETATM 3 O O1B MLA . . . G 2 72.067 21.946 8.056 1 46.69 ? O1B MLA 309 A 1 
HETATM 4 C C2 MLA . . . G 2 70.64 23.085 9.626 1 43.41 ? C2 MLA 309 A 1 
HETATM 5 C C3 MLA . . . G 2 71.83 23.955 10.033 1 42.29 ? C3 MLA 309 A 1 
HETATM 6 O O3A MLA . . . G 2 71.67 24.799 10.885 1 40.55 ? O3A MLA 309 A 1 
HETATM 7 O O3B MLA . . . G 2 72.938 23.824 9.525 1 43.8 ? O3B MLA 309 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           343 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           7 
#