data_3IPX # _model_server_result.job_id eltVuiq8YBMoYg76mVmoVg _model_server_result.datetime_utc '2025-07-07 23:28:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ipx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":263}' # _entry.id 3IPX # _exptl.entry_id 3IPX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3IPX _cell.length_a 80.238 _cell.length_b 80.238 _cell.length_c 93.95 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IPX _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 46.975 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 16 A SER 35 1_555 D MG MG . A MG 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc2 A OE1 GLU 108 A GLU 127 1_555 D MG MG . A MG 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc3 B O2B ADP . A ADP 261 1_555 D MG MG . A MG 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc4 D MG MG . A MG 263 1_555 E O HOH . A HOH 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc5 D MG MG . A MG 263 1_555 E O HOH . A HOH 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3IPX _atom_sites.fract_transf_matrix[1][1] 0.012463 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012463 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010644 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 261 261 ADP ADP . C 3 B86 A 1 262 262 B86 DFK . D 4 MG A 1 263 263 MG MG . E 5 HOH A 1 264 264 HOH HOH . E 5 HOH A 2 265 265 HOH HOH . E 5 HOH A 3 266 266 HOH HOH . E 5 HOH A 4 267 267 HOH HOH . E 5 HOH A 5 268 268 HOH HOH . E 5 HOH A 6 269 269 HOH HOH . E 5 HOH A 7 270 270 HOH HOH . E 5 HOH A 8 271 271 HOH HOH . E 5 HOH A 9 272 272 HOH HOH . E 5 HOH A 10 273 273 HOH HOH . E 5 HOH A 11 274 274 HOH HOH . E 5 HOH A 12 275 275 HOH HOH . E 5 HOH A 13 276 276 HOH HOH . E 5 HOH A 14 277 277 HOH HOH . E 5 HOH A 15 278 278 HOH HOH . E 5 HOH A 16 279 279 HOH HOH . E 5 HOH A 17 280 280 HOH HOH . E 5 HOH A 18 281 281 HOH HOH . E 5 HOH A 19 282 282 HOH HOH . E 5 HOH A 20 283 283 HOH HOH . E 5 HOH A 21 284 284 HOH HOH . E 5 HOH A 22 285 285 HOH HOH . E 5 HOH A 23 286 286 HOH HOH . E 5 HOH A 24 287 287 HOH HOH . E 5 HOH A 25 288 288 HOH HOH . E 5 HOH A 26 289 289 HOH HOH . E 5 HOH A 27 290 290 HOH HOH . E 5 HOH A 28 291 291 HOH HOH . E 5 HOH A 29 292 292 HOH HOH . E 5 HOH A 30 293 293 HOH HOH . E 5 HOH A 31 294 294 HOH HOH . E 5 HOH A 32 295 295 HOH HOH . E 5 HOH A 33 296 296 HOH HOH . E 5 HOH A 34 297 297 HOH HOH . E 5 HOH A 35 298 298 HOH HOH . E 5 HOH A 36 299 299 HOH HOH . E 5 HOH A 37 300 300 HOH HOH . E 5 HOH A 38 301 301 HOH HOH . E 5 HOH A 39 302 302 HOH HOH . E 5 HOH A 40 303 303 HOH HOH . E 5 HOH A 41 304 304 HOH HOH . E 5 HOH A 42 305 305 HOH HOH . E 5 HOH A 43 306 306 HOH HOH . E 5 HOH A 44 307 307 HOH HOH . E 5 HOH A 45 308 308 HOH HOH . E 5 HOH A 46 309 309 HOH HOH . E 5 HOH A 47 310 310 HOH HOH . E 5 HOH A 48 311 311 HOH HOH . E 5 HOH A 49 312 312 HOH HOH . E 5 HOH A 50 313 313 HOH HOH . E 5 HOH A 51 314 314 HOH HOH . E 5 HOH A 52 315 315 HOH HOH . E 5 HOH A 53 316 316 HOH HOH . E 5 HOH A 54 317 317 HOH HOH . E 5 HOH A 55 318 318 HOH HOH . E 5 HOH A 56 319 319 HOH HOH . E 5 HOH A 57 320 320 HOH HOH . E 5 HOH A 58 321 321 HOH HOH . E 5 HOH A 59 322 322 HOH HOH . E 5 HOH A 60 323 323 HOH HOH . E 5 HOH A 61 324 324 HOH HOH . E 5 HOH A 62 325 325 HOH HOH . E 5 HOH A 63 326 326 HOH HOH . E 5 HOH A 64 327 327 HOH HOH . E 5 HOH A 65 328 328 HOH HOH . E 5 HOH A 66 329 329 HOH HOH . E 5 HOH A 67 330 330 HOH HOH . E 5 HOH A 68 331 331 HOH HOH . E 5 HOH A 69 332 332 HOH HOH . E 5 HOH A 70 333 333 HOH HOH . E 5 HOH A 71 334 334 HOH HOH . E 5 HOH A 72 335 335 HOH HOH . E 5 HOH A 73 336 336 HOH HOH . E 5 HOH A 74 337 337 HOH HOH . E 5 HOH A 75 338 338 HOH HOH . E 5 HOH A 76 339 339 HOH HOH . E 5 HOH A 77 340 340 HOH HOH . E 5 HOH A 78 341 341 HOH HOH . E 5 HOH A 79 342 342 HOH HOH . E 5 HOH A 80 343 343 HOH HOH . E 5 HOH A 81 344 344 HOH HOH . E 5 HOH A 82 345 345 HOH HOH . E 5 HOH A 83 346 346 HOH HOH . E 5 HOH A 84 347 347 HOH HOH . E 5 HOH A 85 348 348 HOH HOH . E 5 HOH A 86 349 349 HOH HOH . E 5 HOH A 87 350 350 HOH HOH . E 5 HOH A 88 351 351 HOH HOH . E 5 HOH A 89 352 352 HOH HOH . E 5 HOH A 90 353 353 HOH HOH . E 5 HOH A 91 354 354 HOH HOH . E 5 HOH A 92 355 355 HOH HOH . E 5 HOH A 93 356 356 HOH HOH . E 5 HOH A 94 357 357 HOH HOH . E 5 HOH A 95 358 358 HOH HOH . E 5 HOH A 96 359 359 HOH HOH . E 5 HOH A 97 360 360 HOH HOH . E 5 HOH A 98 361 361 HOH HOH . E 5 HOH A 99 362 362 HOH HOH . E 5 HOH A 100 363 363 HOH HOH . E 5 HOH A 101 364 364 HOH HOH . E 5 HOH A 102 365 365 HOH HOH . E 5 HOH A 103 366 366 HOH HOH . E 5 HOH A 104 367 367 HOH HOH . E 5 HOH A 105 368 368 HOH HOH . E 5 HOH A 106 369 369 HOH HOH . E 5 HOH A 107 370 370 HOH HOH . E 5 HOH A 108 371 371 HOH HOH . E 5 HOH A 109 372 372 HOH HOH . E 5 HOH A 110 373 373 HOH HOH . E 5 HOH A 111 374 374 HOH HOH . E 5 HOH A 112 375 375 HOH HOH . E 5 HOH A 113 376 376 HOH HOH . E 5 HOH A 114 377 377 HOH HOH . E 5 HOH A 115 378 378 HOH HOH . E 5 HOH A 116 379 379 HOH HOH . E 5 HOH A 117 380 380 HOH HOH . E 5 HOH A 118 381 381 HOH HOH . E 5 HOH A 119 382 382 HOH HOH . E 5 HOH A 120 383 383 HOH HOH . E 5 HOH A 121 384 384 HOH HOH . E 5 HOH A 122 385 385 HOH HOH . E 5 HOH A 123 386 386 HOH HOH . E 5 HOH A 124 387 387 HOH HOH . E 5 HOH A 125 388 388 HOH HOH . E 5 HOH A 126 389 389 HOH HOH . E 5 HOH A 127 390 390 HOH HOH . E 5 HOH A 128 391 391 HOH HOH . E 5 HOH A 129 392 392 HOH HOH . E 5 HOH A 130 393 393 HOH HOH . E 5 HOH A 131 394 394 HOH HOH . E 5 HOH A 132 395 395 HOH HOH . E 5 HOH A 133 396 396 HOH HOH . E 5 HOH A 134 397 397 HOH HOH . E 5 HOH A 135 398 398 HOH HOH . E 5 HOH A 136 399 399 HOH HOH . E 5 HOH A 137 400 400 HOH HOH . E 5 HOH A 138 401 401 HOH HOH . E 5 HOH A 139 402 402 HOH HOH . E 5 HOH A 140 403 403 HOH HOH . E 5 HOH A 141 404 404 HOH HOH . E 5 HOH A 142 405 405 HOH HOH . E 5 HOH A 143 406 406 HOH HOH . E 5 HOH A 144 407 407 HOH HOH . E 5 HOH A 145 408 408 HOH HOH . E 5 HOH A 146 409 409 HOH HOH . E 5 HOH A 147 410 410 HOH HOH . E 5 HOH A 148 411 411 HOH HOH . E 5 HOH A 149 412 412 HOH HOH . E 5 HOH A 150 413 413 HOH HOH . E 5 HOH A 151 414 414 HOH HOH . E 5 HOH A 152 415 415 HOH HOH . E 5 HOH A 153 416 416 HOH HOH . E 5 HOH A 154 417 417 HOH HOH . E 5 HOH A 155 418 418 HOH HOH . E 5 HOH A 156 419 419 HOH HOH . E 5 HOH A 157 420 420 HOH HOH . E 5 HOH A 158 421 421 HOH HOH . E 5 HOH A 159 422 422 HOH HOH . E 5 HOH A 160 423 423 HOH HOH . E 5 HOH A 161 424 424 HOH HOH . E 5 HOH A 162 425 425 HOH HOH . E 5 HOH A 163 426 426 HOH HOH . E 5 HOH A 164 427 427 HOH HOH . E 5 HOH A 165 428 428 HOH HOH . E 5 HOH A 166 429 429 HOH HOH . E 5 HOH A 167 430 430 HOH HOH . E 5 HOH A 168 431 431 HOH HOH . E 5 HOH A 169 432 432 HOH HOH . E 5 HOH A 170 433 433 HOH HOH . E 5 HOH A 171 434 434 HOH HOH . E 5 HOH A 172 435 435 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 30.394 _atom_site.Cartn_y 2.494 _atom_site.Cartn_z 21.521 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 48.83 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 263 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #