data_3IPY # _model_server_result.job_id uj9HLIM13Xn6s-7lvyd2lA _model_server_result.datetime_utc '2024-11-23 23:14:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ipy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":261}' # _entry.id 3IPY # _exptl.entry_id 3IPY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 134.087 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MALATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3IPY _cell.length_a 74.556 _cell.length_b 74.428 _cell.length_c 239.097 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IPY _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,F,G,H,J 1 1 A,C,D,E,I 2 1 A,B,C,D,E,F,G,H,I,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C4 H6 O5' _chem_comp.formula_weight 134.087 _chem_comp.id MLT _chem_comp.mon_nstd_flag . _chem_comp.name D-MALATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-2-HYDROXYBUTANEDIOIC ACID;2-HYDROXY-SUCCINIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MLT doub 295 n n C1 O2 MLT sing 296 n n C1 C2 MLT sing 297 n n C2 O3 MLT sing 298 n n C2 C3 MLT sing 299 n n C2 H2 MLT sing 300 n n O3 HO3 MLT sing 301 n n C3 C4 MLT sing 302 n n C3 H31 MLT sing 303 n n C3 H32 MLT sing 304 n n C4 O4 MLT doub 305 n n C4 O5 MLT sing 306 n n O5 HO5 MLT sing 307 n n O2 H6 MLT sing 308 n n # _atom_sites.entry_id 3IPY _atom_sites.fract_transf_matrix[1][1] 0.013413 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013436 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004182 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MLT A 1 261 261 MLT MLT . D 3 B87 A 1 263 263 B87 B87 . E 3 B87 A 1 264 264 B87 B87 . F 2 MLT B 1 262 262 MLT MLT . G 3 B87 B 1 265 265 B87 B87 . H 3 B87 B 1 266 266 B87 B87 . I 4 HOH A 1 267 267 HOH HOH . I 4 HOH A 2 268 268 HOH HOH . I 4 HOH A 3 269 269 HOH HOH . I 4 HOH A 4 270 270 HOH HOH . I 4 HOH A 5 271 271 HOH HOH . I 4 HOH A 6 272 272 HOH HOH . I 4 HOH A 7 273 273 HOH HOH . I 4 HOH A 8 274 274 HOH HOH . I 4 HOH A 9 276 276 HOH HOH . I 4 HOH A 10 277 277 HOH HOH . I 4 HOH A 11 278 278 HOH HOH . I 4 HOH A 12 279 279 HOH HOH . I 4 HOH A 13 280 280 HOH HOH . I 4 HOH A 14 281 281 HOH HOH . I 4 HOH A 15 284 284 HOH HOH . I 4 HOH A 16 285 285 HOH HOH . I 4 HOH A 17 286 286 HOH HOH . I 4 HOH A 18 287 287 HOH HOH . I 4 HOH A 19 288 288 HOH HOH . I 4 HOH A 20 289 289 HOH HOH . I 4 HOH A 21 290 290 HOH HOH . I 4 HOH A 22 291 291 HOH HOH . I 4 HOH A 23 292 292 HOH HOH . I 4 HOH A 24 293 293 HOH HOH . I 4 HOH A 25 294 294 HOH HOH . I 4 HOH A 26 327 327 HOH HOH . I 4 HOH A 27 328 328 HOH HOH . I 4 HOH A 28 329 329 HOH HOH . I 4 HOH A 29 333 333 HOH HOH . I 4 HOH A 30 335 335 HOH HOH . I 4 HOH A 31 336 336 HOH HOH . I 4 HOH A 32 337 337 HOH HOH . I 4 HOH A 33 338 338 HOH HOH . I 4 HOH A 34 346 346 HOH HOH . I 4 HOH A 35 347 347 HOH HOH . I 4 HOH A 36 348 348 HOH HOH . I 4 HOH A 37 349 349 HOH HOH . I 4 HOH A 38 350 350 HOH HOH . I 4 HOH A 39 351 351 HOH HOH . I 4 HOH A 40 352 352 HOH HOH . I 4 HOH A 41 353 353 HOH HOH . I 4 HOH A 42 354 354 HOH HOH . I 4 HOH A 43 355 355 HOH HOH . I 4 HOH A 44 356 356 HOH HOH . I 4 HOH A 45 357 357 HOH HOH . I 4 HOH A 46 358 358 HOH HOH . I 4 HOH A 47 359 359 HOH HOH . I 4 HOH A 48 360 360 HOH HOH . I 4 HOH A 49 361 361 HOH HOH . I 4 HOH A 50 362 362 HOH HOH . I 4 HOH A 51 363 363 HOH HOH . I 4 HOH A 52 364 364 HOH HOH . I 4 HOH A 53 377 377 HOH HOH . J 4 HOH B 1 275 275 HOH HOH . J 4 HOH B 2 282 282 HOH HOH . J 4 HOH B 3 283 283 HOH HOH . J 4 HOH B 4 295 295 HOH HOH . J 4 HOH B 5 296 296 HOH HOH . J 4 HOH B 6 297 297 HOH HOH . J 4 HOH B 7 298 298 HOH HOH . J 4 HOH B 8 299 299 HOH HOH . J 4 HOH B 9 300 300 HOH HOH . J 4 HOH B 10 301 301 HOH HOH . J 4 HOH B 11 302 302 HOH HOH . J 4 HOH B 12 303 303 HOH HOH . J 4 HOH B 13 304 304 HOH HOH . J 4 HOH B 14 305 305 HOH HOH . J 4 HOH B 15 306 306 HOH HOH . J 4 HOH B 16 307 307 HOH HOH . J 4 HOH B 17 308 308 HOH HOH . J 4 HOH B 18 309 309 HOH HOH . J 4 HOH B 19 310 310 HOH HOH . J 4 HOH B 20 311 311 HOH HOH . J 4 HOH B 21 312 312 HOH HOH . J 4 HOH B 22 313 313 HOH HOH . J 4 HOH B 23 314 314 HOH HOH . J 4 HOH B 24 315 315 HOH HOH . J 4 HOH B 25 316 316 HOH HOH . J 4 HOH B 26 317 317 HOH HOH . J 4 HOH B 27 318 318 HOH HOH . J 4 HOH B 28 319 319 HOH HOH . J 4 HOH B 29 320 320 HOH HOH . J 4 HOH B 30 321 321 HOH HOH . J 4 HOH B 31 322 322 HOH HOH . J 4 HOH B 32 323 323 HOH HOH . J 4 HOH B 33 324 324 HOH HOH . J 4 HOH B 34 325 325 HOH HOH . J 4 HOH B 35 326 326 HOH HOH . J 4 HOH B 36 330 330 HOH HOH . J 4 HOH B 37 331 331 HOH HOH . J 4 HOH B 38 332 332 HOH HOH . J 4 HOH B 39 334 334 HOH HOH . J 4 HOH B 40 339 339 HOH HOH . J 4 HOH B 41 340 340 HOH HOH . J 4 HOH B 42 341 341 HOH HOH . J 4 HOH B 43 342 342 HOH HOH . J 4 HOH B 44 343 343 HOH HOH . J 4 HOH B 45 344 344 HOH HOH . J 4 HOH B 46 365 365 HOH HOH . J 4 HOH B 47 366 366 HOH HOH . J 4 HOH B 48 367 367 HOH HOH . J 4 HOH B 49 368 368 HOH HOH . J 4 HOH B 50 369 369 HOH HOH . J 4 HOH B 51 370 370 HOH HOH . J 4 HOH B 52 371 371 HOH HOH . J 4 HOH B 53 372 372 HOH HOH . J 4 HOH B 54 373 373 HOH HOH . J 4 HOH B 55 374 374 HOH HOH . J 4 HOH B 56 375 375 HOH HOH . J 4 HOH B 57 376 376 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLT . . . C 2 7.92 10.18 13.622 1 48.84 ? C1 MLT 261 A 1 HETATM 2 O O1 MLT . . . C 2 7.738 11.212 12.952 1 47.01 ? O1 MLT 261 A 1 HETATM 3 O O2 MLT . . . C 2 8.278 9.158 13.01 1 49.6 ? O2 MLT 261 A 1 HETATM 4 C C2 MLT . . . C 2 7.709 10.145 15.119 1 49.89 ? C2 MLT 261 A 1 HETATM 5 O O3 MLT . . . C 2 8.756 9.45 15.75 1 49.74 ? O3 MLT 261 A 1 HETATM 6 C C3 MLT . . . C 2 6.387 9.46 15.477 1 49.38 ? C3 MLT 261 A 1 HETATM 7 C C4 MLT . . . C 2 5.267 10.479 15.393 1 49.48 ? C4 MLT 261 A 1 HETATM 8 O O4 MLT . . . C 2 4.222 10.231 14.736 1 49.34 ? O4 MLT 261 A 1 HETATM 9 O O5 MLT . . . C 2 5.375 11.589 15.971 1 47.86 ? O5 MLT 261 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #