data_3IQ7 # _model_server_result.job_id Ur9JMVxmb9YKWltcAmMgFw _model_server_result.datetime_utc '2024-11-22 14:00:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3iq7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":799}' # _entry.id 3IQ7 # _exptl.entry_id 3IQ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.15 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R,3R,4S,5R)-2-(4-AMINO-5-IODO-7H-PYRROLO[2,3-D]PYRIMIDIN-7-YL)-5-(HYDROXYMETHYL)TETRAHYDROFURAN-3,4-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3IQ7 _cell.length_a 69.034 _cell.length_b 78.486 _cell.length_c 87.048 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IQ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H13 I N4 O4' _chem_comp.formula_weight 392.15 _chem_comp.id 5ID _chem_comp.mon_nstd_flag . _chem_comp.name (2R,3R,4S,5R)-2-(4-AMINO-5-IODO-7H-PYRROLO[2,3-D]PYRIMIDIN-7-YL)-5-(HYDROXYMETHYL)TETRAHYDROFURAN-3,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 5-IODOTUBERCIDIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' 5ID sing 1 n n O5' H5' 5ID sing 2 n n C5' C4' 5ID sing 3 n n C5' "H5'1" 5ID sing 4 n n C5' "H5'2" 5ID sing 5 n n C4' O4' 5ID sing 6 n n C4' C3' 5ID sing 7 n n C4' H4' 5ID sing 8 n n O4' C1' 5ID sing 9 n n C1' N9 5ID sing 10 n n C1' C2' 5ID sing 11 n n C1' H1' 5ID sing 12 n n N9 C8 5ID sing 13 n y N9 C4 5ID sing 14 n y C8 C7 5ID doub 15 n y C8 H8 5ID sing 16 n n C7 C5 5ID sing 17 n y C7 IAE 5ID sing 18 n n C5 C6 5ID doub 19 n y C5 C4 5ID sing 20 n y C6 N1 5ID sing 21 n y C6 N6 5ID sing 22 n n N1 C2 5ID doub 23 n y C2 N3 5ID sing 24 n y C2 H2 5ID sing 25 n n N3 C4 5ID doub 26 n y N6 H6N1 5ID sing 27 n n N6 H6N2 5ID sing 28 n n C2' O2' 5ID sing 29 n n C2' C3' 5ID sing 30 n n C2' H2' 5ID sing 31 n n O2' HA 5ID sing 32 n n C3' O3' 5ID sing 33 n n C3' H3' 5ID sing 34 n n O3' HB 5ID sing 35 n n # _atom_sites.entry_id 3IQ7 _atom_sites.fract_transf_matrix[1][1] 0.014486 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012741 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011488 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 1 1 PO4 PO4 . C 3 5ID A 1 799 1 5ID DRG . D 4 IOD A 1 800 1 IOD IOD . E 5 EDO A 1 801 1 EDO EDO . F 5 EDO A 1 2 2 EDO EDO . G 6 HOH A 1 3 3 HOH HOH . G 6 HOH A 2 4 4 HOH HOH . G 6 HOH A 3 5 5 HOH HOH . G 6 HOH A 4 7 7 HOH HOH . G 6 HOH A 5 8 8 HOH HOH . G 6 HOH A 6 9 9 HOH HOH . G 6 HOH A 7 10 10 HOH HOH . G 6 HOH A 8 11 11 HOH HOH . G 6 HOH A 9 12 12 HOH HOH . G 6 HOH A 10 14 14 HOH HOH . G 6 HOH A 11 15 15 HOH HOH . G 6 HOH A 12 16 16 HOH HOH . G 6 HOH A 13 17 17 HOH HOH . G 6 HOH A 14 18 18 HOH HOH . G 6 HOH A 15 19 19 HOH HOH . G 6 HOH A 16 21 21 HOH HOH . G 6 HOH A 17 22 22 HOH HOH . G 6 HOH A 18 24 24 HOH HOH . G 6 HOH A 19 25 25 HOH HOH . G 6 HOH A 20 26 26 HOH HOH . G 6 HOH A 21 27 27 HOH HOH . G 6 HOH A 22 28 28 HOH HOH . G 6 HOH A 23 29 29 HOH HOH . G 6 HOH A 24 30 30 HOH HOH . G 6 HOH A 25 31 31 HOH HOH . G 6 HOH A 26 32 32 HOH HOH . G 6 HOH A 27 33 33 HOH HOH . G 6 HOH A 28 34 34 HOH HOH . G 6 HOH A 29 35 35 HOH HOH . G 6 HOH A 30 36 36 HOH HOH . G 6 HOH A 31 37 37 HOH HOH . G 6 HOH A 32 38 38 HOH HOH . G 6 HOH A 33 39 39 HOH HOH . G 6 HOH A 34 40 40 HOH HOH . G 6 HOH A 35 41 41 HOH HOH . G 6 HOH A 36 42 42 HOH HOH . G 6 HOH A 37 43 43 HOH HOH . G 6 HOH A 38 44 44 HOH HOH . G 6 HOH A 39 45 45 HOH HOH . G 6 HOH A 40 46 46 HOH HOH . G 6 HOH A 41 47 47 HOH HOH . G 6 HOH A 42 48 48 HOH HOH . G 6 HOH A 43 49 49 HOH HOH . G 6 HOH A 44 50 50 HOH HOH . G 6 HOH A 45 51 51 HOH HOH . G 6 HOH A 46 52 52 HOH HOH . G 6 HOH A 47 53 53 HOH HOH . G 6 HOH A 48 54 54 HOH HOH . G 6 HOH A 49 55 55 HOH HOH . G 6 HOH A 50 56 56 HOH HOH . G 6 HOH A 51 57 57 HOH HOH . G 6 HOH A 52 59 59 HOH HOH . G 6 HOH A 53 60 60 HOH HOH . G 6 HOH A 54 61 61 HOH HOH . G 6 HOH A 55 62 62 HOH HOH . G 6 HOH A 56 63 63 HOH HOH . G 6 HOH A 57 64 64 HOH HOH . G 6 HOH A 58 65 65 HOH HOH . G 6 HOH A 59 66 66 HOH HOH . G 6 HOH A 60 67 67 HOH HOH . G 6 HOH A 61 68 68 HOH HOH . G 6 HOH A 62 69 69 HOH HOH . G 6 HOH A 63 70 70 HOH HOH . G 6 HOH A 64 71 71 HOH HOH . G 6 HOH A 65 72 72 HOH HOH . G 6 HOH A 66 73 73 HOH HOH . G 6 HOH A 67 74 74 HOH HOH . G 6 HOH A 68 75 75 HOH HOH . G 6 HOH A 69 76 76 HOH HOH . G 6 HOH A 70 77 77 HOH HOH . G 6 HOH A 71 78 78 HOH HOH . G 6 HOH A 72 79 79 HOH HOH . G 6 HOH A 73 80 80 HOH HOH . G 6 HOH A 74 81 81 HOH HOH . G 6 HOH A 75 83 83 HOH HOH . G 6 HOH A 76 84 84 HOH HOH . G 6 HOH A 77 85 85 HOH HOH . G 6 HOH A 78 86 86 HOH HOH . G 6 HOH A 79 88 88 HOH HOH . G 6 HOH A 80 89 89 HOH HOH . G 6 HOH A 81 90 90 HOH HOH . G 6 HOH A 82 91 91 HOH HOH . G 6 HOH A 83 92 92 HOH HOH . G 6 HOH A 84 93 93 HOH HOH . G 6 HOH A 85 94 94 HOH HOH . G 6 HOH A 86 95 95 HOH HOH . G 6 HOH A 87 96 96 HOH HOH . G 6 HOH A 88 98 98 HOH HOH . G 6 HOH A 89 99 99 HOH HOH . G 6 HOH A 90 100 100 HOH HOH . G 6 HOH A 91 103 103 HOH HOH . G 6 HOH A 92 104 104 HOH HOH . G 6 HOH A 93 105 105 HOH HOH . G 6 HOH A 94 106 106 HOH HOH . G 6 HOH A 95 107 107 HOH HOH . G 6 HOH A 96 108 108 HOH HOH . G 6 HOH A 97 109 109 HOH HOH . G 6 HOH A 98 110 110 HOH HOH . G 6 HOH A 99 111 111 HOH HOH . G 6 HOH A 100 112 112 HOH HOH . G 6 HOH A 101 114 114 HOH HOH . G 6 HOH A 102 115 115 HOH HOH . G 6 HOH A 103 116 116 HOH HOH . G 6 HOH A 104 117 117 HOH HOH . G 6 HOH A 105 118 118 HOH HOH . G 6 HOH A 106 119 119 HOH HOH . G 6 HOH A 107 120 120 HOH HOH . G 6 HOH A 108 121 121 HOH HOH . G 6 HOH A 109 122 122 HOH HOH . G 6 HOH A 110 123 123 HOH HOH . G 6 HOH A 111 124 124 HOH HOH . G 6 HOH A 112 125 125 HOH HOH . G 6 HOH A 113 126 126 HOH HOH . G 6 HOH A 114 127 127 HOH HOH . G 6 HOH A 115 128 128 HOH HOH . G 6 HOH A 116 129 129 HOH HOH . G 6 HOH A 117 131 131 HOH HOH . G 6 HOH A 118 132 132 HOH HOH . G 6 HOH A 119 133 133 HOH HOH . G 6 HOH A 120 134 134 HOH HOH . G 6 HOH A 121 135 135 HOH HOH . G 6 HOH A 122 136 136 HOH HOH . G 6 HOH A 123 137 137 HOH HOH . G 6 HOH A 124 138 138 HOH HOH . G 6 HOH A 125 139 139 HOH HOH . G 6 HOH A 126 140 140 HOH HOH . G 6 HOH A 127 141 141 HOH HOH . G 6 HOH A 128 142 142 HOH HOH . G 6 HOH A 129 144 144 HOH HOH . G 6 HOH A 130 145 145 HOH HOH . G 6 HOH A 131 146 146 HOH HOH . G 6 HOH A 132 147 147 HOH HOH . G 6 HOH A 133 148 148 HOH HOH . G 6 HOH A 134 150 150 HOH HOH . G 6 HOH A 135 151 151 HOH HOH . G 6 HOH A 136 153 153 HOH HOH . G 6 HOH A 137 154 154 HOH HOH . G 6 HOH A 138 155 155 HOH HOH . G 6 HOH A 139 156 156 HOH HOH . G 6 HOH A 140 157 157 HOH HOH . G 6 HOH A 141 158 158 HOH HOH . G 6 HOH A 142 160 160 HOH HOH . G 6 HOH A 143 161 161 HOH HOH . G 6 HOH A 144 162 162 HOH HOH . G 6 HOH A 145 163 163 HOH HOH . G 6 HOH A 146 164 164 HOH HOH . G 6 HOH A 147 165 165 HOH HOH . G 6 HOH A 148 166 166 HOH HOH . G 6 HOH A 149 167 167 HOH HOH . G 6 HOH A 150 168 168 HOH HOH . G 6 HOH A 151 169 169 HOH HOH . G 6 HOH A 152 170 170 HOH HOH . G 6 HOH A 153 171 171 HOH HOH . G 6 HOH A 154 173 173 HOH HOH . G 6 HOH A 155 174 174 HOH HOH . G 6 HOH A 156 175 175 HOH HOH . G 6 HOH A 157 176 176 HOH HOH . G 6 HOH A 158 177 177 HOH HOH . G 6 HOH A 159 178 178 HOH HOH . G 6 HOH A 160 179 179 HOH HOH . G 6 HOH A 161 180 180 HOH HOH . G 6 HOH A 162 181 181 HOH HOH . G 6 HOH A 163 182 182 HOH HOH . G 6 HOH A 164 183 183 HOH HOH . G 6 HOH A 165 184 184 HOH HOH . G 6 HOH A 166 185 185 HOH HOH . G 6 HOH A 167 186 186 HOH HOH . G 6 HOH A 168 187 187 HOH HOH . G 6 HOH A 169 188 188 HOH HOH . G 6 HOH A 170 189 189 HOH HOH . G 6 HOH A 171 190 190 HOH HOH . G 6 HOH A 172 192 192 HOH HOH . G 6 HOH A 173 193 193 HOH HOH . G 6 HOH A 174 194 194 HOH HOH . G 6 HOH A 175 195 195 HOH HOH . G 6 HOH A 176 197 197 HOH HOH . G 6 HOH A 177 198 198 HOH HOH . G 6 HOH A 178 199 199 HOH HOH . G 6 HOH A 179 200 200 HOH HOH . G 6 HOH A 180 201 201 HOH HOH . G 6 HOH A 181 202 202 HOH HOH . G 6 HOH A 182 204 204 HOH HOH . G 6 HOH A 183 207 207 HOH HOH . G 6 HOH A 184 208 208 HOH HOH . G 6 HOH A 185 209 209 HOH HOH . G 6 HOH A 186 210 210 HOH HOH . G 6 HOH A 187 213 213 HOH HOH . G 6 HOH A 188 215 215 HOH HOH . G 6 HOH A 189 216 216 HOH HOH . G 6 HOH A 190 217 217 HOH HOH . G 6 HOH A 191 219 219 HOH HOH . G 6 HOH A 192 224 224 HOH HOH . G 6 HOH A 193 229 229 HOH HOH . G 6 HOH A 194 230 230 HOH HOH . G 6 HOH A 195 232 232 HOH HOH . G 6 HOH A 196 234 234 HOH HOH . G 6 HOH A 197 235 235 HOH HOH . G 6 HOH A 198 236 236 HOH HOH . G 6 HOH A 199 237 237 HOH HOH . G 6 HOH A 200 238 238 HOH HOH . G 6 HOH A 201 239 239 HOH HOH . G 6 HOH A 202 240 240 HOH HOH . G 6 HOH A 203 244 244 HOH HOH . G 6 HOH A 204 247 247 HOH HOH . G 6 HOH A 205 248 248 HOH HOH . G 6 HOH A 206 251 251 HOH HOH . G 6 HOH A 207 256 256 HOH HOH . G 6 HOH A 208 261 261 HOH HOH . G 6 HOH A 209 262 262 HOH HOH . G 6 HOH A 210 268 268 HOH HOH . G 6 HOH A 211 269 269 HOH HOH . G 6 HOH A 212 270 270 HOH HOH . G 6 HOH A 213 271 271 HOH HOH . G 6 HOH A 214 272 272 HOH HOH . G 6 HOH A 215 273 273 HOH HOH . G 6 HOH A 216 274 274 HOH HOH . G 6 HOH A 217 276 276 HOH HOH . G 6 HOH A 218 281 281 HOH HOH . G 6 HOH A 219 283 283 HOH HOH . G 6 HOH A 220 284 284 HOH HOH . G 6 HOH A 221 285 285 HOH HOH . G 6 HOH A 222 286 286 HOH HOH . G 6 HOH A 223 288 288 HOH HOH . G 6 HOH A 224 289 289 HOH HOH . G 6 HOH A 225 290 290 HOH HOH . G 6 HOH A 226 291 291 HOH HOH . G 6 HOH A 227 292 292 HOH HOH . G 6 HOH A 228 293 293 HOH HOH . G 6 HOH A 229 294 294 HOH HOH . G 6 HOH A 230 295 295 HOH HOH . G 6 HOH A 231 296 296 HOH HOH . G 6 HOH A 232 297 297 HOH HOH . G 6 HOH A 233 298 298 HOH HOH . G 6 HOH A 234 299 299 HOH HOH . G 6 HOH A 235 300 300 HOH HOH . G 6 HOH A 236 301 301 HOH HOH . G 6 HOH A 237 302 302 HOH HOH . G 6 HOH A 238 303 303 HOH HOH . G 6 HOH A 239 304 304 HOH HOH . G 6 HOH A 240 305 305 HOH HOH . G 6 HOH A 241 306 306 HOH HOH . G 6 HOH A 242 307 307 HOH HOH . G 6 HOH A 243 308 308 HOH HOH . G 6 HOH A 244 309 309 HOH HOH . G 6 HOH A 245 311 311 HOH HOH . G 6 HOH A 246 312 312 HOH HOH . G 6 HOH A 247 313 313 HOH HOH . G 6 HOH A 248 314 314 HOH HOH . G 6 HOH A 249 315 315 HOH HOH . G 6 HOH A 250 316 316 HOH HOH . G 6 HOH A 251 317 317 HOH HOH . G 6 HOH A 252 318 318 HOH HOH . G 6 HOH A 253 319 319 HOH HOH . G 6 HOH A 254 320 320 HOH HOH . G 6 HOH A 255 321 321 HOH HOH . G 6 HOH A 256 322 322 HOH HOH . G 6 HOH A 257 323 323 HOH HOH . G 6 HOH A 258 324 324 HOH HOH . G 6 HOH A 259 325 325 HOH HOH . G 6 HOH A 260 326 326 HOH HOH . G 6 HOH A 261 802 1 HOH HOH . G 6 HOH A 262 803 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' 5ID . . . C 3 8.555 -12.946 -10.552 1 23.06 ? O5' 5ID 799 A 1 HETATM 2 C C5' 5ID . . . C 3 9.107 -14.18 -10.116 1 20.83 ? C5' 5ID 799 A 1 HETATM 3 C C4' 5ID . . . C 3 10.618 -14.333 -10.396 1 17.93 ? C4' 5ID 799 A 1 HETATM 4 O O4' 5ID . . . C 3 10.877 -14.308 -11.816 1 20.92 ? O4' 5ID 799 A 1 HETATM 5 C C1' 5ID . . . C 3 12.081 -13.566 -12.059 1 18.35 ? C1' 5ID 799 A 1 HETATM 6 N N9 5ID . . . C 3 11.722 -12.394 -12.931 1 16.66 ? N9 5ID 799 A 1 HETATM 7 C C8 5ID . . . C 3 10.512 -11.731 -13.07 1 13.06 ? C8 5ID 799 A 1 HETATM 8 C C7 5ID . . . C 3 10.689 -10.721 -13.96 1 10.73 ? C7 5ID 799 A 1 HETATM 9 C C5 5ID . . . C 3 12.038 -10.805 -14.42 1 12.4 ? C5 5ID 799 A 1 HETATM 10 C C6 5ID . . . C 3 12.819 -10.079 -15.304 1 12.05 ? C6 5ID 799 A 1 HETATM 11 N N1 5ID . . . C 3 14.113 -10.418 -15.423 1 20.96 ? N1 5ID 799 A 1 HETATM 12 C C2 5ID . . . C 3 14.632 -11.427 -14.732 1 18.63 ? C2 5ID 799 A 1 HETATM 13 N N3 5ID . . . C 3 13.931 -12.145 -13.841 1 12.8 ? N3 5ID 799 A 1 HETATM 14 C C4 5ID . . . C 3 12.638 -11.826 -13.688 1 16.35 ? C4 5ID 799 A 1 HETATM 15 N N6 5ID . . . C 3 12.278 -9.031 -15.987 1 13.56 ? N6 5ID 799 A 1 HETATM 16 C C2' 5ID . . . C 3 12.61 -13.198 -10.682 1 20.08 ? C2' 5ID 799 A 1 HETATM 17 O O2' 5ID . . . C 3 13.334 -14.305 -10.213 1 20.62 ? O2' 5ID 799 A 1 HETATM 18 C C3' 5ID . . . C 3 11.352 -13.087 -9.898 1 22.38 ? C3' 5ID 799 A 1 HETATM 19 O O3' 5ID . . . C 3 11.621 -13.208 -8.473 1 17.93 ? O3' 5ID 799 A 1 HETATM 20 I IAE 5ID . . . C 3 9.055 -9.542 -14.555 0.7 19.72 ? IAE 5ID 799 A 1 # _model_server_stats.io_time_ms 314 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #