data_3IQB # _model_server_result.job_id t7voM1hR3ykikG3X-Aizug _model_server_result.datetime_utc '2025-02-16 22:07:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3iqb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 3IQB # _exptl.entry_id 3IQB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3IQB _cell.length_a 75.49 _cell.length_b 75.49 _cell.length_c 174.978 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IQB _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 102 A HIS 102 1_555 B FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc2 B FE HEM . A HEM 500 1_555 C O1 OXY . A OXY 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 3IQB _atom_sites.fract_transf_matrix[1][1] 0.013247 _atom_sites.fract_transf_matrix[1][2] 0.007648 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015296 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005715 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 500 500 HEM HEM . C 3 OXY A 1 501 501 OXY OXY . D 4 SO4 A 1 189 1 SO4 SO4 . E 5 HOH A 1 190 1 HOH HOH . E 5 HOH A 2 191 2 HOH HOH . E 5 HOH A 3 192 3 HOH HOH . E 5 HOH A 4 193 4 HOH HOH . E 5 HOH A 5 194 5 HOH HOH . E 5 HOH A 6 195 6 HOH HOH . E 5 HOH A 7 196 7 HOH HOH . E 5 HOH A 8 197 8 HOH HOH . E 5 HOH A 9 198 9 HOH HOH . E 5 HOH A 10 199 10 HOH HOH . E 5 HOH A 11 200 11 HOH HOH . E 5 HOH A 12 201 12 HOH HOH . E 5 HOH A 13 202 13 HOH HOH . E 5 HOH A 14 203 14 HOH HOH . E 5 HOH A 15 204 15 HOH HOH . E 5 HOH A 16 205 16 HOH HOH . E 5 HOH A 17 206 17 HOH HOH . E 5 HOH A 18 207 18 HOH HOH . E 5 HOH A 19 208 19 HOH HOH . E 5 HOH A 20 209 20 HOH HOH . E 5 HOH A 21 210 21 HOH HOH . E 5 HOH A 22 211 22 HOH HOH . E 5 HOH A 23 212 23 HOH HOH . E 5 HOH A 24 213 24 HOH HOH . E 5 HOH A 25 214 25 HOH HOH . E 5 HOH A 26 215 26 HOH HOH . E 5 HOH A 27 216 27 HOH HOH . E 5 HOH A 28 217 28 HOH HOH . E 5 HOH A 29 218 29 HOH HOH . E 5 HOH A 30 219 30 HOH HOH . E 5 HOH A 31 220 31 HOH HOH . E 5 HOH A 32 221 32 HOH HOH . E 5 HOH A 33 222 33 HOH HOH . E 5 HOH A 34 223 34 HOH HOH . E 5 HOH A 35 224 35 HOH HOH . E 5 HOH A 36 225 36 HOH HOH . E 5 HOH A 37 226 37 HOH HOH . E 5 HOH A 38 227 38 HOH HOH . E 5 HOH A 39 228 39 HOH HOH . E 5 HOH A 40 229 40 HOH HOH . E 5 HOH A 41 230 41 HOH HOH . E 5 HOH A 42 231 42 HOH HOH . E 5 HOH A 43 232 43 HOH HOH . E 5 HOH A 44 233 44 HOH HOH . E 5 HOH A 45 234 45 HOH HOH . E 5 HOH A 46 235 46 HOH HOH . E 5 HOH A 47 236 47 HOH HOH . E 5 HOH A 48 237 48 HOH HOH . E 5 HOH A 49 238 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 25.611 -3.56 12.414 1 29 ? CHA HEM 500 A 1 HETATM 2 C CHB HEM . . . B 2 23.012 -7.395 13.883 1 23.43 ? CHB HEM 500 A 1 HETATM 3 C CHC HEM . . . B 2 20.831 -7.716 9.588 1 28.81 ? CHC HEM 500 A 1 HETATM 4 C CHD HEM . . . B 2 23.709 -4.182 7.925 1 27.75 ? CHD HEM 500 A 1 HETATM 5 C C1A HEM . . . B 2 24.991 -4.486 13.238 1 29.81 ? C1A HEM 500 A 1 HETATM 6 C C2A HEM . . . B 2 25.003 -4.513 14.69 1 26.56 ? C2A HEM 500 A 1 HETATM 7 C C3A HEM . . . B 2 24.288 -5.582 15.082 1 29.45 ? C3A HEM 500 A 1 HETATM 8 C C4A HEM . . . B 2 23.788 -6.253 13.897 1 27.27 ? C4A HEM 500 A 1 HETATM 9 C CMA HEM . . . B 2 23.992 -6.052 16.527 1 25.46 ? CMA HEM 500 A 1 HETATM 10 C CAA HEM . . . B 2 25.715 -3.494 15.613 1 21.54 ? CAA HEM 500 A 1 HETATM 11 C CBA HEM . . . B 2 27.223 -3.632 15.473 1 26.57 ? CBA HEM 500 A 1 HETATM 12 C CGA HEM . . . B 2 27.724 -4.557 16.554 1 27.53 ? CGA HEM 500 A 1 HETATM 13 O O1A HEM . . . B 2 27.017 -4.727 17.582 1 26.51 ? O1A HEM 500 A 1 HETATM 14 O O2A HEM . . . B 2 28.829 -5.138 16.389 1 28.67 ? O2A HEM 500 A 1 HETATM 15 C C1B HEM . . . B 2 22.172 -7.816 12.875 1 28.81 ? C1B HEM 500 A 1 HETATM 16 C C2B HEM . . . B 2 21.185 -8.874 12.954 1 28.68 ? C2B HEM 500 A 1 HETATM 17 C C3B HEM . . . B 2 20.58 -8.966 11.759 1 27.94 ? C3B HEM 500 A 1 HETATM 18 C C4B HEM . . . B 2 21.165 -7.955 10.898 1 34.36 ? C4B HEM 500 A 1 HETATM 19 C CMB HEM . . . B 2 20.917 -9.741 14.205 1 24.82 ? CMB HEM 500 A 1 HETATM 20 C CAB HEM . . . B 2 19.452 -9.921 11.293 1 27.05 ? CAB HEM 500 A 1 HETATM 21 C CBB HEM . . . B 2 18.636 -10.563 12.136 1 34.29 ? CBB HEM 500 A 1 HETATM 22 C C1C HEM . . . B 2 21.438 -6.799 8.759 1 30.71 ? C1C HEM 500 A 1 HETATM 23 C C2C HEM . . . B 2 21.106 -6.583 7.372 1 35.5 ? C2C HEM 500 A 1 HETATM 24 C C3C HEM . . . B 2 21.89 -5.612 6.894 1 33.68 ? C3C HEM 500 A 1 HETATM 25 C C4C HEM . . . B 2 22.75 -5.169 7.978 1 29.89 ? C4C HEM 500 A 1 HETATM 26 C CMC HEM . . . B 2 20.025 -7.355 6.588 1 26.63 ? CMC HEM 500 A 1 HETATM 27 C CAC HEM . . . B 2 21.841 -5.1 5.433 1 35.09 ? CAC HEM 500 A 1 HETATM 28 C CBC HEM . . . B 2 22.71 -4.204 4.967 1 36.28 ? CBC HEM 500 A 1 HETATM 29 C C1D HEM . . . B 2 24.433 -3.659 8.972 1 30.41 ? C1D HEM 500 A 1 HETATM 30 C C2D HEM . . . B 2 25.255 -2.476 8.871 1 31.2 ? C2D HEM 500 A 1 HETATM 31 C C3D HEM . . . B 2 25.855 -2.284 10.261 1 30.29 ? C3D HEM 500 A 1 HETATM 32 C C4D HEM . . . B 2 25.333 -3.362 11.077 1 33.1 ? C4D HEM 500 A 1 HETATM 33 C CMD HEM . . . B 2 25.485 -1.592 7.627 1 25.57 ? CMD HEM 500 A 1 HETATM 34 C CAD HEM . . . B 2 26.799 -1.156 10.688 1 25.55 ? CAD HEM 500 A 1 HETATM 35 C CBD HEM . . . B 2 28.219 -1.692 10.593 1 26.87 ? CBD HEM 500 A 1 HETATM 36 C CGD HEM . . . B 2 29.155 -0.564 10.927 1 29.36 ? CGD HEM 500 A 1 HETATM 37 O O1D HEM . . . B 2 30.35 -0.838 11.153 1 30.93 ? O1D HEM 500 A 1 HETATM 38 O O2D HEM . . . B 2 28.711 0.608 10.968 1 32.64 ? O2D HEM 500 A 1 HETATM 39 N NA HEM . . . B 2 24.235 -5.556 12.792 1 30.24 ? NA HEM 500 A 1 HETATM 40 N NB HEM . . . B 2 22.136 -7.282 11.601 1 31.77 ? NB HEM 500 A 1 HETATM 41 N NC HEM . . . B 2 22.449 -5.922 9.096 1 29.68 ? NC HEM 500 A 1 HETATM 42 N ND HEM . . . B 2 24.504 -4.149 10.283 1 28.19 ? ND HEM 500 A 1 HETATM 43 FE FE HEM . . . B 2 23.355 -5.748 10.876 1 25.29 ? FE HEM 500 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #