data_3IQD
#
_model_server_result.job_id            QurU40dXLRTn8CltqdiMKw 
_model_server_result.datetime_utc      '2024-11-14 18:50:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3iqd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":405}' 
#
_entry.id    3IQD 
#
_exptl.entry_id    3IQD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              665.441 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3IQD 
_cell.length_a            96.2 
_cell.length_b            96.2 
_cell.length_c            117.4 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3IQD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H29 N7 O14 P2' 
_chem_comp.formula_weight    665.441 
_chem_comp.id                NAI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     NADH 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAI doub 257 n n 
PA O2A NAI sing 258 n n 
PA O5B NAI sing 259 n n 
PA O3 NAI sing 260 n n 
O2A HOA2 NAI sing 261 n n 
O5B C5B NAI sing 262 n n 
C5B C4B NAI sing 263 n n 
C5B H51A NAI sing 264 n n 
C5B H52A NAI sing 265 n n 
C4B O4B NAI sing 266 n n 
C4B C3B NAI sing 267 n n 
C4B H4B NAI sing 268 n n 
O4B C1B NAI sing 269 n n 
C3B O3B NAI sing 270 n n 
C3B C2B NAI sing 271 n n 
C3B H3B NAI sing 272 n n 
O3B HO3A NAI sing 273 n n 
C2B O2B NAI sing 274 n n 
C2B C1B NAI sing 275 n n 
C2B H2B NAI sing 276 n n 
O2B HO2A NAI sing 277 n n 
C1B N9A NAI sing 278 n n 
C1B H1B NAI sing 279 n n 
N9A C8A NAI sing 280 n y 
N9A C4A NAI sing 281 n y 
C8A N7A NAI doub 282 n y 
C8A H8A NAI sing 283 n n 
N7A C5A NAI sing 284 n y 
C5A C6A NAI sing 285 n y 
C5A C4A NAI doub 286 n y 
C6A N6A NAI sing 287 n n 
C6A N1A NAI doub 288 n y 
N6A H61A NAI sing 289 n n 
N6A H62A NAI sing 290 n n 
N1A C2A NAI sing 291 n y 
C2A N3A NAI doub 292 n y 
C2A H2A NAI sing 293 n n 
N3A C4A NAI sing 294 n y 
O3 PN NAI sing 295 n n 
PN O1N NAI sing 296 n n 
PN O2N NAI doub 297 n n 
PN O5D NAI sing 298 n n 
O1N HO1N NAI sing 299 n n 
O5D C5D NAI sing 300 n n 
C5D C4D NAI sing 301 n n 
C5D H51N NAI sing 302 n n 
C5D H52N NAI sing 303 n n 
C4D O4D NAI sing 304 n n 
C4D C3D NAI sing 305 n n 
C4D H4D NAI sing 306 n n 
O4D C1D NAI sing 307 n n 
C3D O3D NAI sing 308 n n 
C3D C2D NAI sing 309 n n 
C3D H3D NAI sing 310 n n 
O3D HO3N NAI sing 311 n n 
C2D O2D NAI sing 312 n n 
C2D C1D NAI sing 313 n n 
C2D H2D NAI sing 314 n n 
O2D HO2N NAI sing 315 n n 
C1D N1N NAI sing 316 n n 
C1D H1D NAI sing 317 n n 
N1N C2N NAI sing 318 n n 
N1N C6N NAI sing 319 n n 
C2N C3N NAI doub 320 n n 
C2N H2N NAI sing 321 n n 
C3N C7N NAI sing 322 n n 
C3N C4N NAI sing 323 n n 
C7N O7N NAI doub 324 n n 
C7N N7N NAI sing 325 n n 
N7N H71N NAI sing 326 n n 
N7N H72N NAI sing 327 n n 
C4N C5N NAI sing 328 n n 
C4N H4N NAI sing 329 n n 
C4N H42N NAI sing 330 n n 
C5N C6N NAI doub 331 n n 
C5N H5N NAI sing 332 n n 
C6N H6N NAI sing 333 n n 
#
_atom_sites.entry_id                     3IQD 
_atom_sites.fract_transf_matrix[1][1]    0.010395 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010395 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008518 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAI B 1 405 405 NAI NAD . 
C 3 AG2 B 1 406 406 AG2 AG2 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAI . . . B 2 39.392 16.453 -20.897 1 20.55 ? PA NAI 405 B 1 
HETATM 2 O O1A NAI . . . B 2 39.384 15.715 -22.184 1 20.64 ? O1A NAI 405 B 1 
HETATM 3 O O2A NAI . . . B 2 39.605 17.906 -21.077 1 20.35 ? O2A NAI 405 B 1 
HETATM 4 O O5B NAI . . . B 2 40.525 15.831 -19.953 1 21.17 ? O5B NAI 405 B 1 
HETATM 5 C C5B NAI . . . B 2 41.835 15.612 -20.411 1 23.16 ? C5B NAI 405 B 1 
HETATM 6 C C4B NAI . . . B 2 42.607 15.107 -19.204 1 24.74 ? C4B NAI 405 B 1 
HETATM 7 O O4B NAI . . . B 2 42.532 13.695 -19.12 1 26.22 ? O4B NAI 405 B 1 
HETATM 8 C C3B NAI . . . B 2 44.081 15.443 -19.251 1 24.73 ? C3B NAI 405 B 1 
HETATM 9 O O3B NAI . . . B 2 44.323 16.71 -18.709 1 23.95 ? O3B NAI 405 B 1 
HETATM 10 C C2B NAI . . . B 2 44.677 14.35 -18.398 1 25.62 ? C2B NAI 405 B 1 
HETATM 11 O O2B NAI . . . B 2 44.713 14.747 -17.046 1 24.55 ? O2B NAI 405 B 1 
HETATM 12 C C1B NAI . . . B 2 43.726 13.173 -18.58 1 27.21 ? C1B NAI 405 B 1 
HETATM 13 N N9A NAI . . . B 2 44.329 12.202 -19.517 1 28.07 ? N9A NAI 405 B 1 
HETATM 14 C C8A NAI . . . B 2 44.294 12.235 -20.892 1 28.37 ? C8A NAI 405 B 1 
HETATM 15 N N7A NAI . . . B 2 44.978 11.169 -21.373 1 28.26 ? N7A NAI 405 B 1 
HETATM 16 C C5A NAI . . . B 2 45.455 10.458 -20.329 1 28.3 ? C5A NAI 405 B 1 
HETATM 17 C C6A NAI . . . B 2 46.21 9.289 -20.258 1 28.41 ? C6A NAI 405 B 1 
HETATM 18 N N6A NAI . . . B 2 46.253 8.484 -21.314 1 29.11 ? N6A NAI 405 B 1 
HETATM 19 N N1A NAI . . . B 2 46.561 8.78 -19.017 1 28.52 ? N1A NAI 405 B 1 
HETATM 20 C C2A NAI . . . B 2 46.152 9.426 -17.858 1 28.65 ? C2A NAI 405 B 1 
HETATM 21 N N3A NAI . . . B 2 45.399 10.589 -17.938 1 28.53 ? N3A NAI 405 B 1 
HETATM 22 C C4A NAI . . . B 2 45.055 11.095 -19.155 1 28.33 ? C4A NAI 405 B 1 
HETATM 23 O O3 NAI . . . B 2 38.034 16.158 -20.083 1 20.82 ? O3 NAI 405 B 1 
HETATM 24 P PN NAI . . . B 2 37.059 17.331 -19.562 1 21.32 ? PN NAI 405 B 1 
HETATM 25 O O1N NAI . . . B 2 36.741 18.218 -20.698 1 21.99 ? O1N NAI 405 B 1 
HETATM 26 O O2N NAI . . . B 2 37.586 17.938 -18.307 1 21.05 ? O2N NAI 405 B 1 
HETATM 27 O O5D NAI . . . B 2 35.749 16.473 -19.215 1 21.63 ? O5D NAI 405 B 1 
HETATM 28 C C5D NAI . . . B 2 35.76 15.559 -18.139 1 23.16 ? C5D NAI 405 B 1 
HETATM 29 C C4D NAI . . . B 2 34.623 14.562 -18.311 1 24.24 ? C4D NAI 405 B 1 
HETATM 30 O O4D NAI . . . B 2 33.39 15.253 -18.293 1 24.65 ? O4D NAI 405 B 1 
HETATM 31 C C3D NAI . . . B 2 34.719 13.83 -19.64 1 24.81 ? C3D NAI 405 B 1 
HETATM 32 O O3D NAI . . . B 2 34.478 12.464 -19.41 1 24.2 ? O3D NAI 405 B 1 
HETATM 33 C C2D NAI . . . B 2 33.619 14.415 -20.501 1 25.48 ? C2D NAI 405 B 1 
HETATM 34 O O2D NAI . . . B 2 32.994 13.408 -21.264 1 26.21 ? O2D NAI 405 B 1 
HETATM 35 C C1D NAI . . . B 2 32.659 15.038 -19.488 1 25.39 ? C1D NAI 405 B 1 
HETATM 36 N N1N NAI . . . B 2 32.03 16.295 -19.954 1 25.73 ? N1N NAI 405 B 1 
HETATM 37 C C2N NAI . . . B 2 32.748 17.304 -20.559 1 25.16 ? C2N NAI 405 B 1 
HETATM 38 C C3N NAI . . . B 2 32.11 18.477 -20.984 1 24.7 ? C3N NAI 405 B 1 
HETATM 39 C C7N NAI . . . B 2 32.91 19.734 -21.186 1 24.09 ? C7N NAI 405 B 1 
HETATM 40 O O7N NAI . . . B 2 34.319 19.697 -21.137 1 23.46 ? O7N NAI 405 B 1 
HETATM 41 N N7N NAI . . . B 2 32.26 20.876 -21.409 1 23.32 ? N7N NAI 405 B 1 
HETATM 42 C C4N NAI . . . B 2 30.732 18.612 -20.785 1 25.55 ? C4N NAI 405 B 1 
HETATM 43 C C5N NAI . . . B 2 30.008 17.596 -20.164 1 26.43 ? C5N NAI 405 B 1 
HETATM 44 C C6N NAI . . . B 2 30.677 16.441 -19.749 1 26.61 ? C6N NAI 405 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           231 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           44 
#