data_3IQD # _model_server_result.job_id 14IaU94SgQ9bgbQ0RbgB4w _model_server_result.datetime_utc '2024-11-14 18:50:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3iqd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":406}' # _entry.id 3IQD # _exptl.entry_id 3IQD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 130.191 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description AGMATINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3IQD _cell.length_a 96.2 _cell.length_b 96.2 _cell.length_c 117.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IQD _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H14 N4' _chem_comp.formula_weight 130.191 _chem_comp.id AG2 _chem_comp.mon_nstd_flag . _chem_comp.name AGMATINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (4-AMINOBUTYL)GUANIDINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA AG2 sing 1 n n N HN1 AG2 sing 2 n n N HN2 AG2 sing 3 n n CA CB AG2 sing 4 n n CA HA1 AG2 sing 5 n n CA HA2 AG2 sing 6 n n CB CG AG2 sing 7 n n CB HB1 AG2 sing 8 n n CB HB2 AG2 sing 9 n n CG CD AG2 sing 10 n n CG HG1 AG2 sing 11 n n CG HG2 AG2 sing 12 n n CD NE AG2 sing 13 n n CD HD1 AG2 sing 14 n n CD HD2 AG2 sing 15 n n NE CZ AG2 sing 16 n n NE HE1 AG2 sing 17 n n CZ NH1 AG2 doub 18 n n CZ NH2 AG2 sing 19 n n NH1 HH11 AG2 sing 20 n n NH2 HH21 AG2 sing 21 n n NH2 HH22 AG2 sing 22 n n # _atom_sites.entry_id 3IQD _atom_sites.fract_transf_matrix[1][1] 0.010395 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010395 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008518 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAI B 1 405 405 NAI NAD . C 3 AG2 B 1 406 406 AG2 AG2 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N AG2 . . . C 3 26.791 12.764 -22.056 0.5 35.37 ? N AG2 406 B 1 HETATM 2 C CA AG2 . . . C 3 26.392 13.201 -20.689 0.5 35.42 ? CA AG2 406 B 1 HETATM 3 C CB AG2 . . . C 3 24.914 13.591 -20.669 0.5 35.43 ? CB AG2 406 B 1 HETATM 4 C CG AG2 . . . C 3 24.348 13.866 -19.285 0.5 35.68 ? CG AG2 406 B 1 HETATM 5 C CD AG2 . . . C 3 23.772 12.607 -18.649 0.5 36.22 ? CD AG2 406 B 1 HETATM 6 N NE AG2 . . . C 3 22.525 12.873 -17.934 0.5 36.54 ? NE AG2 406 B 1 HETATM 7 C CZ AG2 . . . C 3 22.1 12.184 -16.877 0.5 36.83 ? CZ AG2 406 B 1 HETATM 8 N NH1 AG2 . . . C 3 22.819 11.178 -16.394 0.5 37.16 ? NH1 AG2 406 B 1 HETATM 9 N NH2 AG2 . . . C 3 20.951 12.504 -16.299 0.5 36.67 ? NH2 AG2 406 B 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #