data_3IR3
#
_model_server_result.job_id            jATZHYeTRTKl1tcxGMS__g 
_model_server_result.datetime_utc      '2025-02-05 08:53:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ir3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1}' 
#
_entry.id    3IR3 
#
_exptl.entry_id    3IR3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              102.046 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3IR3 
_cell.length_a            99.88 
_cell.length_b            99.88 
_cell.length_c            77.72 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3IR3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H2 O4 -2' 
_chem_comp.formula_weight    102.046 
_chem_comp.id                MLI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MLI sing 237 n n 
C1 C3 MLI sing 238 n n 
C1 H11 MLI sing 239 n n 
C1 H12 MLI sing 240 n n 
C2 O6 MLI doub 241 n n 
C2 O7 MLI sing 242 n n 
C3 O8 MLI doub 243 n n 
C3 O9 MLI sing 244 n n 
#
_atom_sites.entry_id                     3IR3 
_atom_sites.fract_transf_matrix[1][1]    0.010012 
_atom_sites.fract_transf_matrix[1][2]    0.00578 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011561 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012867 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MLI A 1 1 1 MLI MLI . 
D 3 HOH A 1 3 3 HOH HOH . 
D 3 HOH A 2 5 5 HOH HOH . 
D 3 HOH A 3 7 7 HOH HOH . 
D 3 HOH A 4 8 8 HOH HOH . 
D 3 HOH A 5 9 9 HOH HOH . 
D 3 HOH A 6 10 10 HOH HOH . 
D 3 HOH A 7 11 11 HOH HOH . 
D 3 HOH A 8 12 12 HOH HOH . 
D 3 HOH A 9 14 14 HOH HOH . 
D 3 HOH A 10 15 15 HOH HOH . 
D 3 HOH A 11 19 19 HOH HOH . 
D 3 HOH A 12 20 20 HOH HOH . 
D 3 HOH A 13 169 21 HOH HOH . 
D 3 HOH A 14 170 22 HOH HOH . 
D 3 HOH A 15 171 24 HOH HOH . 
D 3 HOH A 16 172 172 HOH HOH . 
D 3 HOH A 17 173 25 HOH HOH . 
D 3 HOH A 18 174 174 HOH HOH . 
D 3 HOH A 19 175 26 HOH HOH . 
D 3 HOH A 20 176 176 HOH HOH . 
D 3 HOH A 21 177 27 HOH HOH . 
D 3 HOH A 22 178 28 HOH HOH . 
D 3 HOH A 23 179 179 HOH HOH . 
D 3 HOH A 24 180 180 HOH HOH . 
D 3 HOH A 25 181 33 HOH HOH . 
D 3 HOH A 26 182 37 HOH HOH . 
D 3 HOH A 27 183 183 HOH HOH . 
D 3 HOH A 28 184 184 HOH HOH . 
D 3 HOH A 29 185 39 HOH HOH . 
D 3 HOH A 30 186 186 HOH HOH . 
D 3 HOH A 31 187 187 HOH HOH . 
D 3 HOH A 32 188 40 HOH HOH . 
D 3 HOH A 33 189 189 HOH HOH . 
D 3 HOH A 34 190 190 HOH HOH . 
D 3 HOH A 35 191 191 HOH HOH . 
D 3 HOH A 36 192 192 HOH HOH . 
D 3 HOH A 37 193 193 HOH HOH . 
D 3 HOH A 38 194 194 HOH HOH . 
D 3 HOH A 39 195 195 HOH HOH . 
D 3 HOH A 40 196 43 HOH HOH . 
D 3 HOH A 41 197 45 HOH HOH . 
D 3 HOH A 42 198 51 HOH HOH . 
D 3 HOH A 43 199 53 HOH HOH . 
D 3 HOH A 44 200 55 HOH HOH . 
D 3 HOH A 45 201 57 HOH HOH . 
D 3 HOH A 46 202 58 HOH HOH . 
D 3 HOH A 47 203 203 HOH HOH . 
D 3 HOH A 48 204 62 HOH HOH . 
D 3 HOH A 49 205 205 HOH HOH . 
D 3 HOH A 50 206 206 HOH HOH . 
D 3 HOH A 51 207 63 HOH HOH . 
D 3 HOH A 52 208 66 HOH HOH . 
D 3 HOH A 53 209 67 HOH HOH . 
D 3 HOH A 54 210 210 HOH HOH . 
D 3 HOH A 55 211 211 HOH HOH . 
D 3 HOH A 56 212 212 HOH HOH . 
D 3 HOH A 57 213 213 HOH HOH . 
D 3 HOH A 58 214 214 HOH HOH . 
D 3 HOH A 59 215 215 HOH HOH . 
D 3 HOH A 60 216 70 HOH HOH . 
D 3 HOH A 61 217 217 HOH HOH . 
D 3 HOH A 62 218 72 HOH HOH . 
D 3 HOH A 63 219 219 HOH HOH . 
D 3 HOH A 64 220 220 HOH HOH . 
D 3 HOH A 65 221 221 HOH HOH . 
D 3 HOH A 66 222 222 HOH HOH . 
D 3 HOH A 67 223 79 HOH HOH . 
D 3 HOH A 68 224 84 HOH HOH . 
D 3 HOH A 69 225 85 HOH HOH . 
D 3 HOH A 70 226 87 HOH HOH . 
D 3 HOH A 71 227 227 HOH HOH . 
D 3 HOH A 72 228 228 HOH HOH . 
D 3 HOH A 73 229 86 HOH HOH . 
D 3 HOH A 74 230 50 HOH HOH . 
D 3 HOH A 75 231 231 HOH HOH . 
D 3 HOH A 76 232 232 HOH HOH . 
D 3 HOH A 77 233 233 HOH HOH . 
D 3 HOH A 78 234 90 HOH HOH . 
D 3 HOH A 79 235 235 HOH HOH . 
D 3 HOH A 80 236 236 HOH HOH . 
D 3 HOH A 81 237 237 HOH HOH . 
D 3 HOH A 82 238 238 HOH HOH . 
D 3 HOH A 83 239 239 HOH HOH . 
D 3 HOH A 84 240 240 HOH HOH . 
D 3 HOH A 85 241 92 HOH HOH . 
D 3 HOH A 86 242 93 HOH HOH . 
D 3 HOH A 87 243 95 HOH HOH . 
D 3 HOH A 88 244 97 HOH HOH . 
D 3 HOH A 89 245 98 HOH HOH . 
D 3 HOH A 90 246 101 HOH HOH . 
D 3 HOH A 91 247 247 HOH HOH . 
D 3 HOH A 92 248 248 HOH HOH . 
D 3 HOH A 93 249 249 HOH HOH . 
D 3 HOH A 94 250 250 HOH HOH . 
D 3 HOH A 95 251 103 HOH HOH . 
D 3 HOH A 96 252 104 HOH HOH . 
D 3 HOH A 97 253 234 HOH HOH . 
D 3 HOH A 98 254 105 HOH HOH . 
D 3 HOH A 99 255 109 HOH HOH . 
D 3 HOH A 100 256 111 HOH HOH . 
D 3 HOH A 101 257 114 HOH HOH . 
D 3 HOH A 102 258 115 HOH HOH . 
D 3 HOH A 103 259 259 HOH HOH . 
D 3 HOH A 104 260 260 HOH HOH . 
D 3 HOH A 105 261 118 HOH HOH . 
D 3 HOH A 106 262 123 HOH HOH . 
D 3 HOH A 107 263 124 HOH HOH . 
D 3 HOH A 108 264 126 HOH HOH . 
D 3 HOH A 109 265 127 HOH HOH . 
D 3 HOH A 110 266 128 HOH HOH . 
D 3 HOH A 111 267 131 HOH HOH . 
D 3 HOH A 112 268 133 HOH HOH . 
D 3 HOH A 113 269 134 HOH HOH . 
D 3 HOH A 114 270 140 HOH HOH . 
D 3 HOH A 115 271 143 HOH HOH . 
D 3 HOH A 116 272 147 HOH HOH . 
D 3 HOH A 117 273 148 HOH HOH . 
D 3 HOH A 118 274 150 HOH HOH . 
D 3 HOH A 119 275 156 HOH HOH . 
D 3 HOH A 120 276 161 HOH HOH . 
D 3 HOH A 121 277 162 HOH HOH . 
D 3 HOH A 122 278 164 HOH HOH . 
D 3 HOH A 123 279 165 HOH HOH . 
E 3 HOH B 1 1 1 HOH HOH . 
E 3 HOH B 2 2 2 HOH HOH . 
E 3 HOH B 3 6 6 HOH HOH . 
E 3 HOH B 4 13 13 HOH HOH . 
E 3 HOH B 5 16 16 HOH HOH . 
E 3 HOH B 6 17 17 HOH HOH . 
E 3 HOH B 7 18 18 HOH HOH . 
E 3 HOH B 8 169 169 HOH HOH . 
E 3 HOH B 9 170 170 HOH HOH . 
E 3 HOH B 10 171 171 HOH HOH . 
E 3 HOH B 11 172 23 HOH HOH . 
E 3 HOH B 12 173 173 HOH HOH . 
E 3 HOH B 13 174 29 HOH HOH . 
E 3 HOH B 14 175 175 HOH HOH . 
E 3 HOH B 15 176 30 HOH HOH . 
E 3 HOH B 16 177 177 HOH HOH . 
E 3 HOH B 17 178 31 HOH HOH . 
E 3 HOH B 18 179 32 HOH HOH . 
E 3 HOH B 19 180 34 HOH HOH . 
E 3 HOH B 20 181 35 HOH HOH . 
E 3 HOH B 21 182 36 HOH HOH . 
E 3 HOH B 22 183 38 HOH HOH . 
E 3 HOH B 23 184 41 HOH HOH . 
E 3 HOH B 24 185 185 HOH HOH . 
E 3 HOH B 25 186 42 HOH HOH . 
E 3 HOH B 26 187 44 HOH HOH . 
E 3 HOH B 27 188 188 HOH HOH . 
E 3 HOH B 28 189 46 HOH HOH . 
E 3 HOH B 29 190 47 HOH HOH . 
E 3 HOH B 30 191 48 HOH HOH . 
E 3 HOH B 31 192 49 HOH HOH . 
E 3 HOH B 32 194 54 HOH HOH . 
E 3 HOH B 33 195 56 HOH HOH . 
E 3 HOH B 34 196 196 HOH HOH . 
E 3 HOH B 35 197 197 HOH HOH . 
E 3 HOH B 36 198 198 HOH HOH . 
E 3 HOH B 37 199 199 HOH HOH . 
E 3 HOH B 38 200 200 HOH HOH . 
E 3 HOH B 39 201 201 HOH HOH . 
E 3 HOH B 40 202 202 HOH HOH . 
E 3 HOH B 41 203 59 HOH HOH . 
E 3 HOH B 42 204 204 HOH HOH . 
E 3 HOH B 43 205 60 HOH HOH . 
E 3 HOH B 44 206 61 HOH HOH . 
E 3 HOH B 45 207 207 HOH HOH . 
E 3 HOH B 46 208 208 HOH HOH . 
E 3 HOH B 47 209 209 HOH HOH . 
E 3 HOH B 48 210 64 HOH HOH . 
E 3 HOH B 49 211 65 HOH HOH . 
E 3 HOH B 50 212 68 HOH HOH . 
E 3 HOH B 51 213 69 HOH HOH . 
E 3 HOH B 52 214 71 HOH HOH . 
E 3 HOH B 53 215 73 HOH HOH . 
E 3 HOH B 54 216 216 HOH HOH . 
E 3 HOH B 55 217 74 HOH HOH . 
E 3 HOH B 56 218 218 HOH HOH . 
E 3 HOH B 57 219 75 HOH HOH . 
E 3 HOH B 58 220 76 HOH HOH . 
E 3 HOH B 59 221 77 HOH HOH . 
E 3 HOH B 60 222 78 HOH HOH . 
E 3 HOH B 61 223 80 HOH HOH . 
E 3 HOH B 62 224 224 HOH HOH . 
E 3 HOH B 63 225 225 HOH HOH . 
E 3 HOH B 64 226 226 HOH HOH . 
E 3 HOH B 65 227 82 HOH HOH . 
E 3 HOH B 66 228 83 HOH HOH . 
E 3 HOH B 67 229 229 HOH HOH . 
E 3 HOH B 68 230 230 HOH HOH . 
E 3 HOH B 69 231 91 HOH HOH . 
E 3 HOH B 70 232 94 HOH HOH . 
E 3 HOH B 71 233 96 HOH HOH . 
E 3 HOH B 72 234 88 HOH HOH . 
E 3 HOH B 73 235 99 HOH HOH . 
E 3 HOH B 74 236 100 HOH HOH . 
E 3 HOH B 75 237 102 HOH HOH . 
E 3 HOH B 76 238 106 HOH HOH . 
E 3 HOH B 77 239 107 HOH HOH . 
E 3 HOH B 78 240 108 HOH HOH . 
E 3 HOH B 79 241 241 HOH HOH . 
E 3 HOH B 80 242 242 HOH HOH . 
E 3 HOH B 81 243 243 HOH HOH . 
E 3 HOH B 82 244 110 HOH HOH . 
E 3 HOH B 83 245 113 HOH HOH . 
E 3 HOH B 84 246 246 HOH HOH . 
E 3 HOH B 85 247 116 HOH HOH . 
E 3 HOH B 86 248 117 HOH HOH . 
E 3 HOH B 87 249 119 HOH HOH . 
E 3 HOH B 88 250 120 HOH HOH . 
E 3 HOH B 89 251 251 HOH HOH . 
E 3 HOH B 90 252 252 HOH HOH . 
E 3 HOH B 91 253 253 HOH HOH . 
E 3 HOH B 92 254 254 HOH HOH . 
E 3 HOH B 93 255 125 HOH HOH . 
E 3 HOH B 94 256 256 HOH HOH . 
E 3 HOH B 95 257 132 HOH HOH . 
E 3 HOH B 96 258 258 HOH HOH . 
E 3 HOH B 97 259 135 HOH HOH . 
E 3 HOH B 98 260 136 HOH HOH . 
E 3 HOH B 99 261 261 HOH HOH . 
E 3 HOH B 100 262 137 HOH HOH . 
E 3 HOH B 101 263 138 HOH HOH . 
E 3 HOH B 102 264 139 HOH HOH . 
E 3 HOH B 103 265 141 HOH HOH . 
E 3 HOH B 104 266 142 HOH HOH . 
E 3 HOH B 105 267 146 HOH HOH . 
E 3 HOH B 106 268 151 HOH HOH . 
E 3 HOH B 107 269 153 HOH HOH . 
E 3 HOH B 108 270 154 HOH HOH . 
E 3 HOH B 109 271 155 HOH HOH . 
E 3 HOH B 110 272 160 HOH HOH . 
E 3 HOH B 111 273 163 HOH HOH . 
E 3 HOH B 112 274 166 HOH HOH . 
E 3 HOH B 113 275 168 HOH HOH . 
E 3 HOH B 114 276 122 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLI . . . C 2 -19.252 26.029 -16.344 1 67.69 ? C1 MLI 1 A 1 
HETATM 2 C C2 MLI . . . C 2 -18.056 25.79 -17.275 1 80.96 ? C2 MLI 1 A 1 
HETATM 3 C C3 MLI . . . C 2 -19.313 24.918 -15.29 1 75.67 ? C3 MLI 1 A 1 
HETATM 4 O O6 MLI . . . C 2 -18.163 24.861 -18.112 1 71.25 ? O6 MLI 1 A 1 
HETATM 5 O O7 MLI . . . C 2 -17.061 26.538 -17.123 1 65.11 ? O7 MLI 1 A 1 
HETATM 6 O O8 MLI . . . C 2 -18.31 24.773 -14.553 1 66.33 ? O8 MLI 1 A 1 
HETATM 7 O O9 MLI . . . C 2 -20.363 24.238 -15.244 1 71.48 ? O9 MLI 1 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           7 
#