data_3IR6 # _model_server_result.job_id '_HWLoKbzGBjLTnv75EaZzg' _model_server_result.datetime_utc '2024-11-24 04:38:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ir6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":807}' # _entry.id 3IR6 # _exptl.entry_id 3IR6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3IR6 _cell.length_a 154.142 _cell.length_b 239.825 _cell.length_c 139.873 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IR6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 PISA hexameric 6 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 2 1,2 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 3 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_354 -x-2,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 -308.284 0 -69.9365 3 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 K N N ? 8 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C FME 1 C FME 1 1_555 C N GLN 2 C GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? metalc ? metalc1 B SG CYS 16 B CYS 16 1_555 G FE4 SF4 . B SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc2 B SG CYS 19 B CYS 19 1_555 G FE3 SF4 . B SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc3 B SG CYS 22 B CYS 22 1_555 G FE2 SF4 . B SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc4 B SG CYS 26 B CYS 26 1_555 H FE4 SF4 . B SF4 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc5 B SG CYS 184 B CYS 184 1_555 I FE1 SF4 . B SF4 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc6 B SG CYS 187 B CYS 187 1_555 I FE2 SF4 . B SF4 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc7 B SG CYS 192 B CYS 192 1_555 I FE3 SF4 . B SF4 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc8 B SG CYS 196 B CYS 196 1_555 J FE1 F3S . B F3S 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc9 B SG CYS 217 B CYS 217 1_555 J FE4 F3S . B F3S 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc10 B SG CYS 223 B CYS 223 1_555 J FE3 F3S . B F3S 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc11 B SG CYS 227 B CYS 227 1_555 I FE4 SF4 . B SF4 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc12 B SG CYS 244 B CYS 244 1_555 H FE2 SF4 . B SF4 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc13 B SG CYS 247 B CYS 247 1_555 H FE1 SF4 . B SF4 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc14 B SG CYS 259 B CYS 259 1_555 H FE3 SF4 . B SF4 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc15 B SG CYS 263 B CYS 263 1_555 G FE1 SF4 . B SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc16 C NE2 HIS 56 C HIS 56 1_555 K FE HEM . C HEM 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc17 C NE2 HIS 66 C HIS 66 1_555 L FE HEM . C HEM 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc18 C NE2 HIS 187 C HIS 187 1_555 L FE HEM . C HEM 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc19 C NE2 HIS 205 C HIS 205 1_555 K FE HEM . C HEM 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 3IR6 _atom_sites.fract_transf_matrix[1][1] 0.006488 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00417 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007149 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GDP A 1 1247 900 GDP GDP . E 4 GDP A 1 1248 901 GDP GDP . F 5 AGA A 1 1249 309 AGA AGA . G 6 SF4 B 1 802 802 SF4 SF4 . H 6 SF4 B 1 803 803 SF4 SF4 . I 6 SF4 B 1 804 804 SF4 SF4 . J 7 F3S B 1 805 805 F3S F3S . K 8 HEM C 1 806 806 HEM HEM . L 8 HEM C 1 807 807 HEM HEM . M 9 HOH A 1 1250 1 HOH HOH . M 9 HOH A 2 1251 2 HOH HOH . M 9 HOH A 3 1252 5 HOH HOH . M 9 HOH A 4 1253 6 HOH HOH . M 9 HOH A 5 1254 8 HOH HOH . M 9 HOH A 6 1255 9 HOH HOH . M 9 HOH A 7 1256 16 HOH HOH . M 9 HOH A 8 1257 19 HOH HOH . M 9 HOH A 9 1258 20 HOH HOH . M 9 HOH A 10 1259 22 HOH HOH . M 9 HOH A 11 1260 24 HOH HOH . M 9 HOH A 12 1261 27 HOH HOH . M 9 HOH A 13 1262 29 HOH HOH . M 9 HOH A 14 1263 30 HOH HOH . M 9 HOH A 15 1264 31 HOH HOH . M 9 HOH A 16 1265 32 HOH HOH . M 9 HOH A 17 1266 33 HOH HOH . M 9 HOH A 18 1267 34 HOH HOH . M 9 HOH A 19 1268 39 HOH HOH . M 9 HOH A 20 1269 41 HOH HOH . M 9 HOH A 21 1270 43 HOH HOH . M 9 HOH A 22 1271 44 HOH HOH . M 9 HOH A 23 1272 45 HOH HOH . M 9 HOH A 24 1273 47 HOH HOH . M 9 HOH A 25 1274 48 HOH HOH . M 9 HOH A 26 1275 49 HOH HOH . M 9 HOH A 27 1276 50 HOH HOH . M 9 HOH A 28 1277 51 HOH HOH . M 9 HOH A 29 1278 52 HOH HOH . M 9 HOH A 30 1279 53 HOH HOH . M 9 HOH A 31 1280 54 HOH HOH . M 9 HOH A 32 1281 55 HOH HOH . M 9 HOH A 33 1282 56 HOH HOH . M 9 HOH A 34 1283 63 HOH HOH . M 9 HOH A 35 1284 67 HOH HOH . M 9 HOH A 36 1285 68 HOH HOH . M 9 HOH A 37 1286 73 HOH HOH . M 9 HOH A 38 1287 74 HOH HOH . M 9 HOH A 39 1288 75 HOH HOH . M 9 HOH A 40 1289 77 HOH HOH . M 9 HOH A 41 1290 80 HOH HOH . M 9 HOH A 42 1291 82 HOH HOH . M 9 HOH A 43 1292 83 HOH HOH . N 9 HOH B 1 513 4 HOH HOH . N 9 HOH B 2 514 7 HOH HOH . N 9 HOH B 3 515 10 HOH HOH . N 9 HOH B 4 516 12 HOH HOH . N 9 HOH B 5 517 14 HOH HOH . N 9 HOH B 6 518 15 HOH HOH . N 9 HOH B 7 519 18 HOH HOH . N 9 HOH B 8 520 21 HOH HOH . N 9 HOH B 9 521 23 HOH HOH . N 9 HOH B 10 522 25 HOH HOH . N 9 HOH B 11 523 28 HOH HOH . N 9 HOH B 12 524 38 HOH HOH . N 9 HOH B 13 525 40 HOH HOH . N 9 HOH B 14 526 42 HOH HOH . N 9 HOH B 15 527 46 HOH HOH . N 9 HOH B 16 528 57 HOH HOH . N 9 HOH B 17 529 58 HOH HOH . N 9 HOH B 18 530 60 HOH HOH . N 9 HOH B 19 531 61 HOH HOH . N 9 HOH B 20 532 62 HOH HOH . N 9 HOH B 21 533 64 HOH HOH . N 9 HOH B 22 534 65 HOH HOH . N 9 HOH B 23 535 69 HOH HOH . N 9 HOH B 24 536 70 HOH HOH . N 9 HOH B 25 537 71 HOH HOH . N 9 HOH B 26 538 72 HOH HOH . N 9 HOH B 27 539 76 HOH HOH . N 9 HOH B 28 540 78 HOH HOH . N 9 HOH B 29 541 79 HOH HOH . O 9 HOH C 1 226 3 HOH HOH . O 9 HOH C 2 227 11 HOH HOH . O 9 HOH C 3 228 13 HOH HOH . O 9 HOH C 4 229 17 HOH HOH . O 9 HOH C 5 230 26 HOH HOH . O 9 HOH C 6 231 35 HOH HOH . O 9 HOH C 7 232 36 HOH HOH . O 9 HOH C 8 233 37 HOH HOH . O 9 HOH C 9 234 59 HOH HOH . O 9 HOH C 10 235 66 HOH HOH . O 9 HOH C 11 236 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . L 8 -145.351 5.89 -13.22 1 45.51 ? CHA HEM 807 C 1 HETATM 2 C CHB HEM . . . L 8 -147.918 5.704 -17.29 1 45.51 ? CHB HEM 807 C 1 HETATM 3 C CHC HEM . . . L 8 -146.892 0.966 -17.585 1 45.51 ? CHC HEM 807 C 1 HETATM 4 C CHD HEM . . . L 8 -144.346 1.159 -13.475 1 45.51 ? CHD HEM 807 C 1 HETATM 5 C C1A HEM . . . L 8 -146.108 6.274 -14.288 1 45.51 ? C1A HEM 807 C 1 HETATM 6 C C2A HEM . . . L 8 -146.605 7.619 -14.562 1 45.51 ? C2A HEM 807 C 1 HETATM 7 C C3A HEM . . . L 8 -147.338 7.573 -15.692 1 45.51 ? C3A HEM 807 C 1 HETATM 8 C C4A HEM . . . L 8 -147.294 6.177 -16.159 1 45.51 ? C4A HEM 807 C 1 HETATM 9 C CMA HEM . . . L 8 -148.115 8.703 -16.433 1 45.51 ? CMA HEM 807 C 1 HETATM 10 C CAA HEM . . . L 8 -146.303 8.839 -13.651 1 45.51 ? CAA HEM 807 C 1 HETATM 11 C CBA HEM . . . L 8 -147.544 9.142 -12.706 1 45.51 ? CBA HEM 807 C 1 HETATM 12 C CGA HEM . . . L 8 -147.998 10.613 -12.683 1 45.51 ? CGA HEM 807 C 1 HETATM 13 O O1A HEM . . . L 8 -148.94 10.918 -13.498 1 45.51 ? O1A HEM 807 C 1 HETATM 14 O O2A HEM . . . L 8 -147.359 11.423 -11.874 1 45.51 ? O2A HEM 807 C 1 HETATM 15 C C1B HEM . . . L 8 -147.876 4.392 -17.733 1 45.51 ? C1B HEM 807 C 1 HETATM 16 C C2B HEM . . . L 8 -148.548 3.888 -18.943 1 45.51 ? C2B HEM 807 C 1 HETATM 17 C C3B HEM . . . L 8 -148.256 2.549 -19.031 1 45.51 ? C3B HEM 807 C 1 HETATM 18 C C4B HEM . . . L 8 -147.403 2.221 -17.87 1 45.51 ? C4B HEM 807 C 1 HETATM 19 C CMB HEM . . . L 8 -149.412 4.799 -19.88 1 45.51 ? CMB HEM 807 C 1 HETATM 20 C CAB HEM . . . L 8 -148.713 1.486 -20.127 1 45.51 ? CAB HEM 807 C 1 HETATM 21 C CBB HEM . . . L 8 -148.78 1.708 -21.486 1 45.51 ? CBB HEM 807 C 1 HETATM 22 C C1C HEM . . . L 8 -146.109 0.583 -16.521 1 45.51 ? C1C HEM 807 C 1 HETATM 23 C C2C HEM . . . L 8 -145.6 -0.766 -16.252 1 45.51 ? C2C HEM 807 C 1 HETATM 24 C C3C HEM . . . L 8 -144.886 -0.71 -15.097 1 45.51 ? C3C HEM 807 C 1 HETATM 25 C C4C HEM . . . L 8 -144.94 0.677 -14.63 1 45.51 ? C4C HEM 807 C 1 HETATM 26 C CMC HEM . . . L 8 -145.879 -2.01 -17.175 1 45.51 ? CMC HEM 807 C 1 HETATM 27 C CAC HEM . . . L 8 -144.129 -1.832 -14.325 1 45.51 ? CAC HEM 807 C 1 HETATM 28 C CBC HEM . . . L 8 -142.959 -2.287 -14.844 1 45.51 ? CBC HEM 807 C 1 HETATM 29 C C1D HEM . . . L 8 -144.405 2.474 -13.034 1 45.51 ? C1D HEM 807 C 1 HETATM 30 C C2D HEM . . . L 8 -143.783 2.989 -11.79 1 45.51 ? C2D HEM 807 C 1 HETATM 31 C C3D HEM . . . L 8 -144.089 4.301 -11.74 1 45.51 ? C3D HEM 807 C 1 HETATM 32 C C4D HEM . . . L 8 -144.873 4.626 -12.931 1 45.51 ? C4D HEM 807 C 1 HETATM 33 C CMD HEM . . . L 8 -142.958 2.148 -10.767 1 45.51 ? CMD HEM 807 C 1 HETATM 34 C CAD HEM . . . L 8 -143.767 5.423 -10.692 1 45.51 ? CAD HEM 807 C 1 HETATM 35 C CBD HEM . . . L 8 -144.729 5.491 -9.43 1 45.51 ? CBD HEM 807 C 1 HETATM 36 C CGD HEM . . . L 8 -146.227 5.726 -9.784 1 45.51 ? CGD HEM 807 C 1 HETATM 37 O O1D HEM . . . L 8 -146.52 6.848 -10.354 1 45.51 ? O1D HEM 807 C 1 HETATM 38 O O2D HEM . . . L 8 -147.032 4.759 -9.476 1 45.51 ? O2D HEM 807 C 1 HETATM 39 N NA HEM . . . L 8 -146.528 5.411 -15.282 1 45.51 ? NA HEM 807 C 1 HETATM 40 N NB HEM . . . L 8 -147.192 3.361 -17.098 1 45.51 ? NB HEM 807 C 1 HETATM 41 N NC HEM . . . L 8 -145.692 1.462 -15.52 1 45.51 ? NC HEM 807 C 1 HETATM 42 N ND HEM . . . L 8 -145.065 3.515 -13.69 1 45.51 ? ND HEM 807 C 1 HETATM 43 FE FE HEM . . . L 8 -146.113 3.478 -15.395 1 45.51 ? FE HEM 807 C 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #