data_3IRN
#
_model_server_result.job_id            WRsz3z0VOto7eY-JDpX-gA 
_model_server_result.datetime_utc      '2024-11-09 02:34:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3irn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":601}' 
#
_entry.id    3IRN 
#
_exptl.entry_id    3IRN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              251.715 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-(4-chlorophenyl)-6,6-dimethyl-1,6-dihydro-1,3,5-triazine-2,4-diamine 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          113.361 
_cell.angle_gamma         90 
_cell.entry_id            3IRN 
_cell.length_a            81.345 
_cell.length_b            165.593 
_cell.length_c            84.848 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3IRN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,Q,R 1 1 
C,D,K,L,M,N,O,P,S,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 I N N 
? 2 K N N 
? 2 N N N 
#
_chem_comp.formula           'C11 H14 Cl N5' 
_chem_comp.formula_weight    251.715 
_chem_comp.id                1CY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-(4-chlorophenyl)-6,6-dimethyl-1,6-dihydro-1,3,5-triazine-2,4-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Cycloguanil 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C6 N1 1CY sing 1 n n 
C2 N1 1CY doub 2 n n 
N3 C2 1CY sing 3 n n 
C2 N7 1CY sing 4 n n 
C4 N3 1CY doub 5 n n 
N8 C4 1CY sing 6 n n 
C4 N5 1CY sing 7 n n 
C11 N5 1CY sing 8 n n 
N5 C6 1CY sing 9 n n 
C6 C10 1CY sing 10 n n 
C6 C9 1CY sing 11 n n 
N7 HN7 1CY sing 12 n n 
N7 HN7A 1CY sing 13 n n 
N8 HN8 1CY sing 14 n n 
N8 HN8A 1CY sing 15 n n 
C9 H9 1CY sing 16 n n 
C9 H9A 1CY sing 17 n n 
C9 H9B 1CY sing 18 n n 
C10 H10 1CY sing 19 n n 
C10 H10A 1CY sing 20 n n 
C10 H10B 1CY sing 21 n n 
C16 C11 1CY doub 22 n y 
C12 C11 1CY sing 23 n y 
C13 C12 1CY doub 24 n y 
C12 H12 1CY sing 25 n n 
C14 C13 1CY sing 26 n y 
C13 H13 1CY sing 27 n n 
CL17 C14 1CY sing 28 n n 
C14 C15 1CY doub 29 n y 
C15 C16 1CY sing 30 n y 
C15 H15 1CY sing 31 n n 
C16 H16 1CY sing 32 n n 
#
_atom_sites.entry_id                     3IRN 
_atom_sites.fract_transf_matrix[1][1]    0.012287 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005295 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006023 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012834 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 1CY A 1 601 601 1CY 1CY . 
F 3 NDP A 1 701 701 NDP NDP . 
G 4 PO4 A 1 801 801 PO4 PO4 . 
H 4 PO4 A 1 802 802 PO4 PO4 . 
I 2 1CY B 1 602 602 1CY 1CY . 
J 3 NDP B 1 702 702 NDP NDP . 
K 2 1CY C 1 603 603 1CY 1CY . 
L 3 NDP C 1 703 703 NDP NDP . 
M 4 PO4 C 1 804 804 PO4 PO4 . 
N 2 1CY D 1 604 604 1CY 1CY . 
O 3 NDP D 1 704 704 NDP NDP . 
P 4 PO4 D 1 803 803 PO4 PO4 . 
Q 5 HOH A 1 1001 1001 HOH HOH . 
Q 5 HOH A 2 1004 1004 HOH HOH . 
Q 5 HOH A 3 1006 1006 HOH HOH . 
Q 5 HOH A 4 1011 1011 HOH HOH . 
Q 5 HOH A 5 1015 1015 HOH HOH . 
Q 5 HOH A 6 1030 1030 HOH HOH . 
Q 5 HOH A 7 1032 1032 HOH HOH . 
Q 5 HOH A 8 1034 1034 HOH HOH . 
Q 5 HOH A 9 1035 1035 HOH HOH . 
Q 5 HOH A 10 1039 1039 HOH HOH . 
Q 5 HOH A 11 1042 1042 HOH HOH . 
Q 5 HOH A 12 1045 1045 HOH HOH . 
Q 5 HOH A 13 1046 1046 HOH HOH . 
Q 5 HOH A 14 1051 1051 HOH HOH . 
Q 5 HOH A 15 1052 1052 HOH HOH . 
Q 5 HOH A 16 1064 1064 HOH HOH . 
Q 5 HOH A 17 1065 1065 HOH HOH . 
Q 5 HOH A 18 1069 1069 HOH HOH . 
Q 5 HOH A 19 1070 1070 HOH HOH . 
Q 5 HOH A 20 1071 1071 HOH HOH . 
Q 5 HOH A 21 1076 1076 HOH HOH . 
Q 5 HOH A 22 1078 1078 HOH HOH . 
Q 5 HOH A 23 1081 1081 HOH HOH . 
Q 5 HOH A 24 1082 1082 HOH HOH . 
Q 5 HOH A 25 1084 1084 HOH HOH . 
Q 5 HOH A 26 1085 1085 HOH HOH . 
Q 5 HOH A 27 1086 1086 HOH HOH . 
Q 5 HOH A 28 1090 1090 HOH HOH . 
Q 5 HOH A 29 1095 1095 HOH HOH . 
Q 5 HOH A 30 1098 1098 HOH HOH . 
Q 5 HOH A 31 1106 1106 HOH HOH . 
Q 5 HOH A 32 1113 1113 HOH HOH . 
Q 5 HOH A 33 1114 1114 HOH HOH . 
Q 5 HOH A 34 1120 1120 HOH HOH . 
Q 5 HOH A 35 1122 1122 HOH HOH . 
Q 5 HOH A 36 1123 1123 HOH HOH . 
Q 5 HOH A 37 1130 1130 HOH HOH . 
Q 5 HOH A 38 1135 1135 HOH HOH . 
Q 5 HOH A 39 1136 1136 HOH HOH . 
Q 5 HOH A 40 1140 1140 HOH HOH . 
Q 5 HOH A 41 1147 1147 HOH HOH . 
Q 5 HOH A 42 1148 1148 HOH HOH . 
Q 5 HOH A 43 1151 1151 HOH HOH . 
Q 5 HOH A 44 1153 1153 HOH HOH . 
Q 5 HOH A 45 1158 1158 HOH HOH . 
Q 5 HOH A 46 1163 1163 HOH HOH . 
Q 5 HOH A 47 1166 1166 HOH HOH . 
Q 5 HOH A 48 1169 1169 HOH HOH . 
Q 5 HOH A 49 1172 1172 HOH HOH . 
Q 5 HOH A 50 1174 1174 HOH HOH . 
Q 5 HOH A 51 1176 1176 HOH HOH . 
Q 5 HOH A 52 1181 1181 HOH HOH . 
Q 5 HOH A 53 1185 1185 HOH HOH . 
Q 5 HOH A 54 1187 1187 HOH HOH . 
Q 5 HOH A 55 1191 1191 HOH HOH . 
Q 5 HOH A 56 1192 1192 HOH HOH . 
Q 5 HOH A 57 1197 1197 HOH HOH . 
Q 5 HOH A 58 1199 1199 HOH HOH . 
R 5 HOH B 1 1002 1002 HOH HOH . 
R 5 HOH B 2 1003 1003 HOH HOH . 
R 5 HOH B 3 1010 1010 HOH HOH . 
R 5 HOH B 4 1014 1014 HOH HOH . 
R 5 HOH B 5 1016 1016 HOH HOH . 
R 5 HOH B 6 1019 1019 HOH HOH . 
R 5 HOH B 7 1020 1020 HOH HOH . 
R 5 HOH B 8 1021 1021 HOH HOH . 
R 5 HOH B 9 1028 1028 HOH HOH . 
R 5 HOH B 10 1031 1031 HOH HOH . 
R 5 HOH B 11 1033 1033 HOH HOH . 
R 5 HOH B 12 1036 1036 HOH HOH . 
R 5 HOH B 13 1041 1041 HOH HOH . 
R 5 HOH B 14 1061 1061 HOH HOH . 
R 5 HOH B 15 1063 1063 HOH HOH . 
R 5 HOH B 16 1067 1067 HOH HOH . 
R 5 HOH B 17 1072 1072 HOH HOH . 
R 5 HOH B 18 1092 1092 HOH HOH . 
R 5 HOH B 19 1099 1099 HOH HOH . 
R 5 HOH B 20 1100 1100 HOH HOH . 
R 5 HOH B 21 1101 1101 HOH HOH . 
R 5 HOH B 22 1102 1102 HOH HOH . 
R 5 HOH B 23 1103 1103 HOH HOH . 
R 5 HOH B 24 1104 1104 HOH HOH . 
R 5 HOH B 25 1105 1105 HOH HOH . 
R 5 HOH B 26 1107 1107 HOH HOH . 
R 5 HOH B 27 1111 1111 HOH HOH . 
R 5 HOH B 28 1116 1116 HOH HOH . 
R 5 HOH B 29 1125 1125 HOH HOH . 
R 5 HOH B 30 1137 1137 HOH HOH . 
R 5 HOH B 31 1141 1141 HOH HOH . 
R 5 HOH B 32 1143 1143 HOH HOH . 
R 5 HOH B 33 1145 1145 HOH HOH . 
R 5 HOH B 34 1150 1150 HOH HOH . 
R 5 HOH B 35 1152 1152 HOH HOH . 
R 5 HOH B 36 1154 1154 HOH HOH . 
R 5 HOH B 37 1159 1159 HOH HOH . 
R 5 HOH B 38 1160 1160 HOH HOH . 
R 5 HOH B 39 1171 1171 HOH HOH . 
R 5 HOH B 40 1173 1173 HOH HOH . 
R 5 HOH B 41 1178 1178 HOH HOH . 
R 5 HOH B 42 1183 1183 HOH HOH . 
R 5 HOH B 43 1188 1188 HOH HOH . 
R 5 HOH B 44 1189 1189 HOH HOH . 
R 5 HOH B 45 1190 1190 HOH HOH . 
R 5 HOH B 46 1193 1193 HOH HOH . 
R 5 HOH B 47 1203 1203 HOH HOH . 
R 5 HOH B 48 1205 1205 HOH HOH . 
R 5 HOH B 49 1208 1208 HOH HOH . 
S 5 HOH C 1 1005 1005 HOH HOH . 
S 5 HOH C 2 1007 1007 HOH HOH . 
S 5 HOH C 3 1008 1008 HOH HOH . 
S 5 HOH C 4 1009 1009 HOH HOH . 
S 5 HOH C 5 1013 1013 HOH HOH . 
S 5 HOH C 6 1017 1017 HOH HOH . 
S 5 HOH C 7 1018 1018 HOH HOH . 
S 5 HOH C 8 1022 1022 HOH HOH . 
S 5 HOH C 9 1023 1023 HOH HOH . 
S 5 HOH C 10 1026 1026 HOH HOH . 
S 5 HOH C 11 1027 1027 HOH HOH . 
S 5 HOH C 12 1037 1037 HOH HOH . 
S 5 HOH C 13 1040 1040 HOH HOH . 
S 5 HOH C 14 1044 1044 HOH HOH . 
S 5 HOH C 15 1050 1050 HOH HOH . 
S 5 HOH C 16 1053 1053 HOH HOH . 
S 5 HOH C 17 1054 1054 HOH HOH . 
S 5 HOH C 18 1055 1055 HOH HOH . 
S 5 HOH C 19 1057 1057 HOH HOH . 
S 5 HOH C 20 1058 1058 HOH HOH . 
S 5 HOH C 21 1059 1059 HOH HOH . 
S 5 HOH C 22 1062 1062 HOH HOH . 
S 5 HOH C 23 1066 1066 HOH HOH . 
S 5 HOH C 24 1073 1073 HOH HOH . 
S 5 HOH C 25 1074 1074 HOH HOH . 
S 5 HOH C 26 1079 1079 HOH HOH . 
S 5 HOH C 27 1087 1087 HOH HOH . 
S 5 HOH C 28 1089 1089 HOH HOH . 
S 5 HOH C 29 1091 1091 HOH HOH . 
S 5 HOH C 30 1096 1096 HOH HOH . 
S 5 HOH C 31 1097 1097 HOH HOH . 
S 5 HOH C 32 1108 1108 HOH HOH . 
S 5 HOH C 33 1110 1110 HOH HOH . 
S 5 HOH C 34 1112 1112 HOH HOH . 
S 5 HOH C 35 1115 1115 HOH HOH . 
S 5 HOH C 36 1117 1117 HOH HOH . 
S 5 HOH C 37 1118 1118 HOH HOH . 
S 5 HOH C 38 1119 1119 HOH HOH . 
S 5 HOH C 39 1131 1131 HOH HOH . 
S 5 HOH C 40 1132 1132 HOH HOH . 
S 5 HOH C 41 1133 1133 HOH HOH . 
S 5 HOH C 42 1134 1134 HOH HOH . 
S 5 HOH C 43 1138 1138 HOH HOH . 
S 5 HOH C 44 1146 1146 HOH HOH . 
S 5 HOH C 45 1155 1155 HOH HOH . 
S 5 HOH C 46 1156 1156 HOH HOH . 
S 5 HOH C 47 1164 1164 HOH HOH . 
S 5 HOH C 48 1167 1167 HOH HOH . 
S 5 HOH C 49 1168 1168 HOH HOH . 
S 5 HOH C 50 1177 1177 HOH HOH . 
S 5 HOH C 51 1179 1179 HOH HOH . 
S 5 HOH C 52 1180 1180 HOH HOH . 
S 5 HOH C 53 1184 1184 HOH HOH . 
S 5 HOH C 54 1196 1196 HOH HOH . 
S 5 HOH C 55 1198 1198 HOH HOH . 
S 5 HOH C 56 1201 1201 HOH HOH . 
S 5 HOH C 57 1202 1202 HOH HOH . 
S 5 HOH C 58 1204 1204 HOH HOH . 
S 5 HOH C 59 1207 1207 HOH HOH . 
S 5 HOH C 60 1209 1209 HOH HOH . 
T 5 HOH D 1 1012 1012 HOH HOH . 
T 5 HOH D 2 1024 1024 HOH HOH . 
T 5 HOH D 3 1025 1025 HOH HOH . 
T 5 HOH D 4 1029 1029 HOH HOH . 
T 5 HOH D 5 1038 1038 HOH HOH . 
T 5 HOH D 6 1043 1043 HOH HOH . 
T 5 HOH D 7 1047 1047 HOH HOH . 
T 5 HOH D 8 1048 1048 HOH HOH . 
T 5 HOH D 9 1049 1049 HOH HOH . 
T 5 HOH D 10 1056 1056 HOH HOH . 
T 5 HOH D 11 1060 1060 HOH HOH . 
T 5 HOH D 12 1068 1068 HOH HOH . 
T 5 HOH D 13 1075 1075 HOH HOH . 
T 5 HOH D 14 1077 1077 HOH HOH . 
T 5 HOH D 15 1080 1080 HOH HOH . 
T 5 HOH D 16 1083 1083 HOH HOH . 
T 5 HOH D 17 1088 1088 HOH HOH . 
T 5 HOH D 18 1093 1093 HOH HOH . 
T 5 HOH D 19 1094 1094 HOH HOH . 
T 5 HOH D 20 1109 1109 HOH HOH . 
T 5 HOH D 21 1121 1121 HOH HOH . 
T 5 HOH D 22 1124 1124 HOH HOH . 
T 5 HOH D 23 1126 1126 HOH HOH . 
T 5 HOH D 24 1127 1127 HOH HOH . 
T 5 HOH D 25 1128 1128 HOH HOH . 
T 5 HOH D 26 1129 1129 HOH HOH . 
T 5 HOH D 27 1139 1139 HOH HOH . 
T 5 HOH D 28 1142 1142 HOH HOH . 
T 5 HOH D 29 1144 1144 HOH HOH . 
T 5 HOH D 30 1149 1149 HOH HOH . 
T 5 HOH D 31 1157 1157 HOH HOH . 
T 5 HOH D 32 1161 1161 HOH HOH . 
T 5 HOH D 33 1162 1162 HOH HOH . 
T 5 HOH D 34 1165 1165 HOH HOH . 
T 5 HOH D 35 1170 1170 HOH HOH . 
T 5 HOH D 36 1175 1175 HOH HOH . 
T 5 HOH D 37 1182 1182 HOH HOH . 
T 5 HOH D 38 1186 1186 HOH HOH . 
T 5 HOH D 39 1194 1194 HOH HOH . 
T 5 HOH D 40 1195 1195 HOH HOH . 
T 5 HOH D 41 1200 1200 HOH HOH . 
T 5 HOH D 42 1206 1206 HOH HOH . 
T 5 HOH D 43 1210 1210 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 1CY . . . E 2 44.229 -4.35 33.896 1 33.63 ? N1 1CY 601 A 1 
HETATM 2 C C2 1CY . . . E 2 43.045 -3.966 33.654 1 32.47 ? C2 1CY 601 A 1 
HETATM 3 N N3 1CY . . . E 2 42.482 -2.923 34.097 1 31.49 ? N3 1CY 601 A 1 
HETATM 4 C C4 1CY . . . E 2 43.057 -2.088 34.869 1 33.54 ? C4 1CY 601 A 1 
HETATM 5 N N5 1CY . . . E 2 44.366 -2.291 35.263 1 34.23 ? N5 1CY 601 A 1 
HETATM 6 C C6 1CY . . . E 2 45.093 -3.517 34.795 1 33.93 ? C6 1CY 601 A 1 
HETATM 7 N N7 1CY . . . E 2 42.323 -4.743 32.85 1 34.41 ? N7 1CY 601 A 1 
HETATM 8 N N8 1CY . . . E 2 42.329 -1.021 35.234 1 35.29 ? N8 1CY 601 A 1 
HETATM 9 C C9 1CY . . . E 2 46.372 -3.172 34 1 33.4 ? C9 1CY 601 A 1 
HETATM 10 C C10 1CY . . . E 2 45.448 -4.462 35.968 1 33.59 ? C10 1CY 601 A 1 
HETATM 11 C C11 1CY . . . E 2 44.911 -1.272 36.05 1 34.11 ? C11 1CY 601 A 1 
HETATM 12 C C12 1CY . . . E 2 45.449 -0.137 35.44 1 34.41 ? C12 1CY 601 A 1 
HETATM 13 C C13 1CY . . . E 2 45.992 0.879 36.195 1 34.5 ? C13 1CY 601 A 1 
HETATM 14 C C14 1CY . . . E 2 46.004 0.777 37.56 1 34.46 ? C14 1CY 601 A 1 
HETATM 15 C C15 1CY . . . E 2 45.475 -0.333 38.188 1 34.31 ? C15 1CY 601 A 1 
HETATM 16 C C16 1CY . . . E 2 44.929 -1.356 37.438 1 34.16 ? C16 1CY 601 A 1 
HETATM 17 CL CL17 1CY . . . E 2 46.682 2.039 38.477 1 37.82 ? CL17 1CY 601 A 1 
#
_model_server_stats.io_time_ms              358 
_model_server_stats.parse_time_ms           38 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           339 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           17 
#