data_3IRO
#
_model_server_result.job_id            kd5lPyh9MVSP2_eROyeb0A 
_model_server_result.datetime_utc      '2024-11-28 05:15:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3iro 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":704}' 
#
_entry.id    3IRO 
#
_exptl.entry_id    3IRO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          113.41 
_cell.angle_gamma         90 
_cell.entry_id            3IRO 
_cell.length_a            81.544 
_cell.length_b            165.936 
_cell.length_c            84.718 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3IRO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,K,L,M,N,O,CA,DA 1 1 
C,D,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,EA,FA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 L N N 
? 3 Q N N 
? 3 X N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 299 n n 
PA O2A NDP sing 300 n n 
PA O5B NDP sing 301 n n 
PA O3 NDP sing 302 n n 
O2A HOA2 NDP sing 303 n n 
O5B C5B NDP sing 304 n n 
C5B C4B NDP sing 305 n n 
C5B H51A NDP sing 306 n n 
C5B H52A NDP sing 307 n n 
C4B O4B NDP sing 308 n n 
C4B C3B NDP sing 309 n n 
C4B H4B NDP sing 310 n n 
O4B C1B NDP sing 311 n n 
C3B O3B NDP sing 312 n n 
C3B C2B NDP sing 313 n n 
C3B H3B NDP sing 314 n n 
O3B HO3A NDP sing 315 n n 
C2B O2B NDP sing 316 n n 
C2B C1B NDP sing 317 n n 
C2B H2B NDP sing 318 n n 
O2B P2B NDP sing 319 n n 
C1B N9A NDP sing 320 n n 
C1B H1B NDP sing 321 n n 
N9A C8A NDP sing 322 n y 
N9A C4A NDP sing 323 n y 
C8A N7A NDP doub 324 n y 
C8A H8A NDP sing 325 n n 
N7A C5A NDP sing 326 n y 
C5A C6A NDP sing 327 n y 
C5A C4A NDP doub 328 n y 
C6A N6A NDP sing 329 n n 
C6A N1A NDP doub 330 n y 
N6A H61A NDP sing 331 n n 
N6A H62A NDP sing 332 n n 
N1A C2A NDP sing 333 n y 
C2A N3A NDP doub 334 n y 
C2A H2A NDP sing 335 n n 
N3A C4A NDP sing 336 n y 
O3 PN NDP sing 337 n n 
PN O1N NDP doub 338 n n 
PN O2N NDP sing 339 n n 
PN O5D NDP sing 340 n n 
O2N H21N NDP sing 341 n n 
O5D C5D NDP sing 342 n n 
C5D C4D NDP sing 343 n n 
C5D H51N NDP sing 344 n n 
C5D H52N NDP sing 345 n n 
C4D O4D NDP sing 346 n n 
C4D C3D NDP sing 347 n n 
C4D H4D NDP sing 348 n n 
O4D C1D NDP sing 349 n n 
C3D O3D NDP sing 350 n n 
C3D C2D NDP sing 351 n n 
C3D H3D NDP sing 352 n n 
O3D HO3N NDP sing 353 n n 
C2D O2D NDP sing 354 n n 
C2D C1D NDP sing 355 n n 
C2D H2D NDP sing 356 n n 
O2D HO2N NDP sing 357 n n 
C1D N1N NDP sing 358 n n 
C1D H1D NDP sing 359 n n 
N1N C2N NDP sing 360 n n 
N1N C6N NDP sing 361 n n 
C2N C3N NDP doub 362 n n 
C2N H2N NDP sing 363 n n 
C3N C7N NDP sing 364 n n 
C3N C4N NDP sing 365 n n 
C7N O7N NDP doub 366 n n 
C7N N7N NDP sing 367 n n 
N7N H71N NDP sing 368 n n 
N7N H72N NDP sing 369 n n 
C4N C5N NDP sing 370 n n 
C4N H41N NDP sing 371 n n 
C4N H42N NDP sing 372 n n 
C5N C6N NDP doub 373 n n 
C5N H5N NDP sing 374 n n 
C6N H6N NDP sing 375 n n 
P2B O1X NDP doub 376 n n 
P2B O2X NDP sing 377 n n 
P2B O3X NDP sing 378 n n 
O2X HOP2 NDP sing 379 n n 
O3X HOP3 NDP sing 380 n n 
#
_atom_sites.entry_id                     3IRO 
_atom_sites.fract_transf_matrix[1][1]    0.012263 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005309 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006026 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012863 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 2CY A 1 601 601 2CY 2CY . 
F 3 NDP A 1 701 701 NDP NDP . 
G 4 PO4 A 1 802 802 PO4 PO4 . 
H 5 ACT A 1 807 807 ACT ACT . 
I 5 ACT A 1 808 808 ACT ACT . 
J 5 ACT A 1 809 809 ACT ACT . 
K 2 2CY B 1 602 602 2CY 2CY . 
L 3 NDP B 1 702 702 NDP NDP . 
M 4 PO4 B 1 801 801 PO4 PO4 . 
N 6 GOL B 1 806 806 GOL GOL . 
O 5 ACT B 1 811 811 ACT ACT . 
P 2 2CY C 1 603 603 2CY 2CY . 
Q 3 NDP C 1 703 703 NDP NDP . 
R 4 PO4 C 1 803 803 PO4 PO4 . 
S 4 PO4 C 1 804 804 PO4 PO4 . 
T 6 GOL C 1 805 805 GOL GOL . 
U 5 ACT C 1 812 812 ACT ACT . 
V 5 ACT C 1 813 813 ACT ACT . 
W 2 2CY D 1 604 604 2CY 2CY . 
X 3 NDP D 1 704 704 NDP NDP . 
Y 5 ACT D 1 810 810 ACT ACT . 
Z 5 ACT D 1 814 814 ACT ACT . 
AA 5 ACT D 1 815 815 ACT ACT . 
BA 5 ACT D 1 816 816 ACT ACT . 
CA 7 HOH A 1 1007 1007 HOH HOH . 
CA 7 HOH A 2 1009 1009 HOH HOH . 
CA 7 HOH A 3 1016 1016 HOH HOH . 
CA 7 HOH A 4 1020 1020 HOH HOH . 
CA 7 HOH A 5 1022 1022 HOH HOH . 
CA 7 HOH A 6 1023 1023 HOH HOH . 
CA 7 HOH A 7 1025 1025 HOH HOH . 
CA 7 HOH A 8 1031 1031 HOH HOH . 
CA 7 HOH A 9 1033 1033 HOH HOH . 
CA 7 HOH A 10 1036 1036 HOH HOH . 
CA 7 HOH A 11 1039 1039 HOH HOH . 
CA 7 HOH A 12 1042 1042 HOH HOH . 
CA 7 HOH A 13 1045 1045 HOH HOH . 
CA 7 HOH A 14 1051 1051 HOH HOH . 
CA 7 HOH A 15 1055 1055 HOH HOH . 
CA 7 HOH A 16 1056 1056 HOH HOH . 
CA 7 HOH A 17 1059 1059 HOH HOH . 
CA 7 HOH A 18 1063 1063 HOH HOH . 
CA 7 HOH A 19 1069 1069 HOH HOH . 
CA 7 HOH A 20 1070 1070 HOH HOH . 
CA 7 HOH A 21 1075 1075 HOH HOH . 
CA 7 HOH A 22 1076 1076 HOH HOH . 
CA 7 HOH A 23 1083 1083 HOH HOH . 
DA 7 HOH B 1 1001 1001 HOH HOH . 
DA 7 HOH B 2 1005 1005 HOH HOH . 
DA 7 HOH B 3 1010 1010 HOH HOH . 
DA 7 HOH B 4 1021 1021 HOH HOH . 
DA 7 HOH B 5 1028 1028 HOH HOH . 
DA 7 HOH B 6 1044 1044 HOH HOH . 
DA 7 HOH B 7 1046 1046 HOH HOH . 
DA 7 HOH B 8 1047 1047 HOH HOH . 
DA 7 HOH B 9 1048 1048 HOH HOH . 
DA 7 HOH B 10 1052 1052 HOH HOH . 
DA 7 HOH B 11 1060 1060 HOH HOH . 
DA 7 HOH B 12 1064 1064 HOH HOH . 
EA 7 HOH C 1 1003 1003 HOH HOH . 
EA 7 HOH C 2 1004 1004 HOH HOH . 
EA 7 HOH C 3 1006 1006 HOH HOH . 
EA 7 HOH C 4 1011 1011 HOH HOH . 
EA 7 HOH C 5 1017 1017 HOH HOH . 
EA 7 HOH C 6 1018 1018 HOH HOH . 
EA 7 HOH C 7 1019 1019 HOH HOH . 
EA 7 HOH C 8 1026 1026 HOH HOH . 
EA 7 HOH C 9 1030 1030 HOH HOH . 
EA 7 HOH C 10 1032 1032 HOH HOH . 
EA 7 HOH C 11 1034 1034 HOH HOH . 
EA 7 HOH C 12 1040 1040 HOH HOH . 
EA 7 HOH C 13 1043 1043 HOH HOH . 
EA 7 HOH C 14 1050 1050 HOH HOH . 
EA 7 HOH C 15 1062 1062 HOH HOH . 
EA 7 HOH C 16 1065 1065 HOH HOH . 
EA 7 HOH C 17 1066 1066 HOH HOH . 
EA 7 HOH C 18 1067 1067 HOH HOH . 
EA 7 HOH C 19 1068 1068 HOH HOH . 
EA 7 HOH C 20 1071 1071 HOH HOH . 
EA 7 HOH C 21 1077 1077 HOH HOH . 
EA 7 HOH C 22 1080 1080 HOH HOH . 
EA 7 HOH C 23 1081 1081 HOH HOH . 
FA 7 HOH D 1 1002 1002 HOH HOH . 
FA 7 HOH D 2 1008 1008 HOH HOH . 
FA 7 HOH D 3 1012 1012 HOH HOH . 
FA 7 HOH D 4 1013 1013 HOH HOH . 
FA 7 HOH D 5 1014 1014 HOH HOH . 
FA 7 HOH D 6 1015 1015 HOH HOH . 
FA 7 HOH D 7 1024 1024 HOH HOH . 
FA 7 HOH D 8 1027 1027 HOH HOH . 
FA 7 HOH D 9 1029 1029 HOH HOH . 
FA 7 HOH D 10 1035 1035 HOH HOH . 
FA 7 HOH D 11 1037 1037 HOH HOH . 
FA 7 HOH D 12 1038 1038 HOH HOH . 
FA 7 HOH D 13 1041 1041 HOH HOH . 
FA 7 HOH D 14 1049 1049 HOH HOH . 
FA 7 HOH D 15 1053 1053 HOH HOH . 
FA 7 HOH D 16 1054 1054 HOH HOH . 
FA 7 HOH D 17 1057 1057 HOH HOH . 
FA 7 HOH D 18 1058 1058 HOH HOH . 
FA 7 HOH D 19 1061 1061 HOH HOH . 
FA 7 HOH D 20 1072 1072 HOH HOH . 
FA 7 HOH D 21 1073 1073 HOH HOH . 
FA 7 HOH D 22 1074 1074 HOH HOH . 
FA 7 HOH D 23 1078 1078 HOH HOH . 
FA 7 HOH D 24 1079 1079 HOH HOH . 
FA 7 HOH D 25 1082 1082 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . X 3 10.631 15.35 53.91 1 43.06 ? PA NDP 704 D 1 
HETATM 2 O O1A NDP . . . X 3 11.129 14.364 53.005 1 41.99 ? O1A NDP 704 D 1 
HETATM 3 O O2A NDP . . . X 3 9.41 15.113 54.73 1 44.61 ? O2A NDP 704 D 1 
HETATM 4 O O5B NDP . . . X 3 11.84 15.658 54.979 1 44.49 ? O5B NDP 704 D 1 
HETATM 5 C C5B NDP . . . X 3 13.16 15.81 54.457 1 47.16 ? C5B NDP 704 D 1 
HETATM 6 C C4B NDP . . . X 3 14.047 15.75 55.677 1 47.49 ? C4B NDP 704 D 1 
HETATM 7 O O4B NDP . . . X 3 14.237 14.331 55.999 1 46.59 ? O4B NDP 704 D 1 
HETATM 8 C C3B NDP . . . X 3 15.409 16.298 55.564 1 48.12 ? C3B NDP 704 D 1 
HETATM 9 O O3B NDP . . . X 3 15.562 17.722 55.475 1 46.44 ? O3B NDP 704 D 1 
HETATM 10 C C2B NDP . . . X 3 16.179 15.607 56.584 1 48.6 ? C2B NDP 704 D 1 
HETATM 11 O O2B NDP . . . X 3 15.97 16.021 57.93 1 51.28 ? O2B NDP 704 D 1 
HETATM 12 C C1B NDP . . . X 3 15.637 14.227 56.277 1 47.78 ? C1B NDP 704 D 1 
HETATM 13 N N9A NDP . . . X 3 16.452 13.404 55.332 1 48.38 ? N9A NDP 704 D 1 
HETATM 14 C C8A NDP . . . X 3 16.236 13.132 53.963 1 48.68 ? C8A NDP 704 D 1 
HETATM 15 N N7A NDP . . . X 3 17.195 12.365 53.476 1 48.01 ? N7A NDP 704 D 1 
HETATM 16 C C5A NDP . . . X 3 18.057 12.116 54.499 1 46.99 ? C5A NDP 704 D 1 
HETATM 17 C C6A NDP . . . X 3 19.263 11.382 54.626 1 46.86 ? C6A NDP 704 D 1 
HETATM 18 N N6A NDP . . . X 3 19.779 10.747 53.582 1 46.16 ? N6A NDP 704 D 1 
HETATM 19 N N1A NDP . . . X 3 19.896 11.331 55.827 1 46.95 ? N1A NDP 704 D 1 
HETATM 20 C C2A NDP . . . X 3 19.371 11.978 56.893 1 47.26 ? C2A NDP 704 D 1 
HETATM 21 N N3A NDP . . . X 3 18.242 12.699 56.877 1 47.62 ? N3A NDP 704 D 1 
HETATM 22 C C4A NDP . . . X 3 17.624 12.732 55.638 1 47.83 ? C4A NDP 704 D 1 
HETATM 23 O O3 NDP . . . X 3 10.441 16.771 53.227 1 48.5 ? O3 NDP 704 D 1 
HETATM 24 P PN NDP . . . X 3 10.345 17.456 51.759 1 50.06 ? PN NDP 704 D 1 
HETATM 25 O O1N NDP . . . X 3 10.718 18.86 51.931 1 51.6 ? O1N NDP 704 D 1 
HETATM 26 O O2N NDP . . . X 3 11.092 16.572 50.824 1 49.52 ? O2N NDP 704 D 1 
HETATM 27 O O5D NDP . . . X 3 8.773 17.231 51.461 1 56.51 ? O5D NDP 704 D 1 
HETATM 28 C C5D NDP . . . X 3 7.754 17.338 52.54 1 68.11 ? C5D NDP 704 D 1 
HETATM 29 C C4D NDP . . . X 3 6.541 18.191 52.031 1 75.7 ? C4D NDP 704 D 1 
HETATM 30 O O4D NDP . . . X 3 5.671 17.274 51.374 1 79.22 ? O4D NDP 704 D 1 
HETATM 31 C C3D NDP . . . X 3 5.712 18.708 53.223 1 78.06 ? C3D NDP 704 D 1 
HETATM 32 O O3D NDP . . . X 3 5.25 20.032 52.973 1 78.34 ? O3D NDP 704 D 1 
HETATM 33 C C2D NDP . . . X 3 4.62 17.693 53.474 1 80.2 ? C2D NDP 704 D 1 
HETATM 34 O O2D NDP . . . X 3 3.46 18.314 54.002 1 81.33 ? O2D NDP 704 D 1 
HETATM 35 C C1D NDP . . . X 3 4.366 17.262 51.962 1 81.59 ? C1D NDP 704 D 1 
HETATM 36 N N1N NDP . . . X 3 3.835 15.871 51.89 1 84.6 ? N1N NDP 704 D 1 
HETATM 37 C C2N NDP . . . X 3 2.612 15.715 51.186 1 86.99 ? C2N NDP 704 D 1 
HETATM 38 C C3N NDP . . . X 3 2.075 14.352 51.1 1 88.97 ? C3N NDP 704 D 1 
HETATM 39 C C7N NDP . . . X 3 0.81 14.089 50.389 1 89.84 ? C7N NDP 704 D 1 
HETATM 40 O O7N NDP . . . X 3 0.305 12.948 50.28 1 89.69 ? O7N NDP 704 D 1 
HETATM 41 N N7N NDP . . . X 3 0.127 15.103 49.812 1 90.76 ? N7N NDP 704 D 1 
HETATM 42 C C4N NDP . . . X 3 2.795 13.307 51.71 1 88.32 ? C4N NDP 704 D 1 
HETATM 43 C C5N NDP . . . X 3 3.974 13.489 52.385 1 87.84 ? C5N NDP 704 D 1 
HETATM 44 C C6N NDP . . . X 3 4.503 14.766 52.481 1 86.25 ? C6N NDP 704 D 1 
HETATM 45 P P2B NDP . . . X 3 16.769 17.105 58.653 1 52.64 ? P2B NDP 704 D 1 
HETATM 46 O O1X NDP . . . X 3 16.099 18.358 58.265 1 52.74 ? O1X NDP 704 D 1 
HETATM 47 O O2X NDP . . . X 3 16.706 16.825 60.1 1 53.59 ? O2X NDP 704 D 1 
HETATM 48 O O3X NDP . . . X 3 18.206 17.062 58.159 1 51.7 ? O3X NDP 704 D 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           48 
#