data_3IRR
#
_model_server_result.job_id            sR7FsHi8_hwWXYNqCgp3XA 
_model_server_result.datetime_utc      '2024-12-26 17:21:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3irr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":14}' 
#
_entry.id    3IRR 
#
_exptl.entry_id    3IRR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              238.305 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3IRR 
_cell.length_a            30.667 
_cell.length_b            102.205 
_cell.length_c            105.883 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3IRR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
hydrog WATSON-CRICK hydrog1 D N3 DC 3 F DC 1 1_555 E N1 DG 15 G DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 D N4 DC 3 F DC 1 1_555 E O6 DG 15 G DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 D O2 DC 3 F DC 1 1_555 E N2 DG 15 G DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 D N1 DG 4 F DG 2 1_555 E N3 DC 14 G DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 D N2 DG 4 F DG 2 1_555 E O2 DC 14 G DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 D O6 DG 4 F DG 2 1_555 E N4 DC 14 G DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 D N3 DC 5 F DC 3 1_555 E N1 DG 13 G DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 D N4 DC 5 F DC 3 1_555 E O6 DG 13 G DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 D O2 DC 5 F DC 3 1_555 E N2 DG 13 G DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 D N1 DG 6 F DG 4 1_555 E N3 DC 12 G DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 D N2 DG 6 F DG 4 1_555 E O2 DC 12 G DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 D O6 DG 6 F DG 4 1_555 E N4 DC 12 G DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 D N3 DC 7 F DC 5 1_555 E N1 DG 11 G DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 D N4 DC 7 F DC 5 1_555 E O6 DG 11 G DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 D O2 DC 7 F DC 5 1_555 E N2 DG 11 G DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 D N1 DG 8 F DG 6 1_555 E N3 DC 10 G DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 D N2 DG 8 F DG 6 1_555 E O2 DC 10 G DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 D O6 DG 8 F DG 6 1_555 E N4 DC 10 G DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DT-DA PAIR' hydrog19 D N3 DT 9 F DT 7 1_555 E N1 DA 9 G DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 D N3 DC 10 F DC 8 1_555 E N1 DG 8 G DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 D N4 DC 10 F DC 8 1_555 E O6 DG 8 G DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 D O2 DC 10 F DC 8 1_555 E N2 DG 8 G DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 D N1 DG 11 F DG 9 1_555 E N3 DC 7 G DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 D N2 DG 11 F DG 9 1_555 E O2 DC 7 G DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog25 D O6 DG 11 F DG 9 1_555 E N4 DC 7 G DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog26 D N3 DC 12 F DC 10 1_555 E N1 DG 6 G DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog27 D N4 DC 12 F DC 10 1_555 E O6 DG 6 G DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog28 D O2 DC 12 F DC 10 1_555 E N2 DG 6 G DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DG-DC PAIR' hydrog29 D N2 DG 13 F DG 11 1_555 E O2 DC 5 G DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog30 D N3 DC 14 F DC 12 1_555 E N1 DG 4 G DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog31 D N4 DC 14 F DC 12 1_555 E O6 DG 4 G DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog32 D O2 DC 14 F DC 12 1_555 E N2 DG 4 G DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog33 D N1 DG 15 F DG 13 1_555 E N3 DC 3 G DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog34 D N2 DG 15 F DG 13 1_555 E O2 DC 3 G DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog35 D O6 DG 15 F DG 13 1_555 E N4 DC 3 G DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C8 H18 N2 O4 S' 
_chem_comp.formula_weight    238.305 
_chem_comp.id                EPE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEPES 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 EPE sing 219 n n 
N1 C6 EPE sing 220 n n 
N1 C9 EPE sing 221 n n 
C2 C3 EPE sing 222 n n 
C2 H21 EPE sing 223 n n 
C2 H22 EPE sing 224 n n 
C3 N4 EPE sing 225 n n 
C3 H31 EPE sing 226 n n 
C3 H32 EPE sing 227 n n 
N4 C5 EPE sing 228 n n 
N4 C7 EPE sing 229 n n 
C5 C6 EPE sing 230 n n 
C5 H51 EPE sing 231 n n 
C5 H52 EPE sing 232 n n 
C6 H61 EPE sing 233 n n 
C6 H62 EPE sing 234 n n 
C7 C8 EPE sing 235 n n 
C7 H71 EPE sing 236 n n 
C7 H72 EPE sing 237 n n 
C8 O8 EPE sing 238 n n 
C8 H81 EPE sing 239 n n 
C8 H82 EPE sing 240 n n 
O8 HO8 EPE sing 241 n n 
C9 C10 EPE sing 242 n n 
C9 H91 EPE sing 243 n n 
C9 H92 EPE sing 244 n n 
C10 S EPE sing 245 n n 
C10 H101 EPE sing 246 n n 
C10 H102 EPE sing 247 n n 
S O1S EPE doub 248 n n 
S O2S EPE doub 249 n n 
S O3S EPE sing 250 n n 
O3S HOS3 EPE sing 251 n n 
#
_atom_sites.entry_id                     3IRR 
_atom_sites.fract_transf_matrix[1][1]    0.032608 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009784 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009444 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 EPE F 1 14 14 EPE EPE . 
H 5 HOH A 1 1 1 HOH HOH . 
H 5 HOH A 2 8 8 HOH HOH . 
H 5 HOH A 3 9 9 HOH HOH . 
H 5 HOH A 4 11 11 HOH HOH . 
H 5 HOH A 5 12 12 HOH HOH . 
H 5 HOH A 6 28 28 HOH HOH . 
H 5 HOH A 7 30 30 HOH HOH . 
I 5 HOH B 1 2 2 HOH HOH . 
I 5 HOH B 2 18 18 HOH HOH . 
I 5 HOH B 3 19 19 HOH HOH . 
I 5 HOH B 4 20 20 HOH HOH . 
J 5 HOH C 1 7 7 HOH HOH . 
J 5 HOH C 2 15 15 HOH HOH . 
J 5 HOH C 3 17 17 HOH HOH . 
J 5 HOH C 4 25 25 HOH HOH . 
J 5 HOH C 5 31 31 HOH HOH . 
K 5 HOH F 1 15 15 HOH HOH . 
K 5 HOH F 2 16 16 HOH HOH . 
K 5 HOH F 3 17 17 HOH HOH . 
K 5 HOH F 4 18 18 HOH HOH . 
K 5 HOH F 5 21 21 HOH HOH . 
K 5 HOH F 6 23 23 HOH HOH . 
L 5 HOH G 1 14 14 HOH HOH . 
L 5 HOH G 2 15 15 HOH HOH . 
L 5 HOH G 3 16 16 HOH HOH . 
L 5 HOH G 4 29 29 HOH HOH . 
M 5 HOH D 1 16 16 HOH HOH . 
M 5 HOH D 2 22 22 HOH HOH . 
M 5 HOH D 3 24 24 HOH HOH . 
M 5 HOH D 4 26 26 HOH HOH . 
M 5 HOH D 5 27 27 HOH HOH . 
M 5 HOH D 6 32 32 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 EPE . . . G 4 -28.836 7.421 31.613 0.8 37.95 ? N1 EPE 14 F 1 
HETATM 2 C C2 EPE . . . G 4 -28.874 6.365 30.587 0.8 33.46 ? C2 EPE 14 F 1 
HETATM 3 C C3 EPE . . . G 4 -27.591 6.374 29.768 0.8 33.83 ? C3 EPE 14 F 1 
HETATM 4 N N4 EPE . . . G 4 -26.491 6.048 30.642 0.8 40.24 ? N4 EPE 14 F 1 
HETATM 5 C C5 EPE . . . G 4 -26.755 6.077 32.064 0.8 44.22 ? C5 EPE 14 F 1 
HETATM 6 C C6 EPE . . . G 4 -27.623 7.275 32.447 0.8 40.4 ? C6 EPE 14 F 1 
HETATM 7 C C7 EPE . . . G 4 -25.141 5.9 30.131 0.8 38.93 ? C7 EPE 14 F 1 
HETATM 8 C C8 EPE . . . G 4 -24.134 5.663 31.251 0.8 53.37 ? C8 EPE 14 F 1 
HETATM 9 O O8 EPE . . . G 4 -22.821 5.75 30.743 0.8 55.13 ? O8 EPE 14 F 1 
HETATM 10 C C9 EPE . . . G 4 -30.006 7.238 32.486 0.8 38.01 ? C9 EPE 14 F 1 
HETATM 11 C C10 EPE . . . G 4 -30.694 8.572 32.751 0.8 49.55 ? C10 EPE 14 F 1 
HETATM 12 S S EPE . . . G 4 -31.546 8.6 34.349 0.8 69.25 ? S EPE 14 F 1 
HETATM 13 O O1S EPE . . . G 4 -32.759 7.793 34.267 0.8 56.84 ? O1S EPE 14 F 1 
HETATM 14 O O2S EPE . . . G 4 -30.661 8.062 35.379 0.8 47.31 ? O2S EPE 14 F 1 
HETATM 15 O O3S EPE . . . G 4 -31.909 9.97 34.699 0.8 52.33 ? O3S EPE 14 F 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           471 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           15 
#