data_3IRV # _model_server_result.job_id vAZOCt9jR4AJNrphd8Serw _model_server_result.datetime_utc '2024-11-05 00:40:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3irv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3IRV # _exptl.entry_id 3IRV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3IRV _cell.length_a 67.477 _cell.length_b 67.477 _cell.length_c 178.343 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IRV _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 33.7385 58.436796 59.447667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3IRV _atom_sites.fract_transf_matrix[1][1] 0.01482 _atom_sites.fract_transf_matrix[1][2] 0.008556 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017113 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005607 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 1 1 GOL GOL . C 3 PO4 A 1 261 1 PO4 PO4 . D 4 HOH A 1 2 2 HOH HOH . D 4 HOH A 2 3 3 HOH HOH . D 4 HOH A 3 5 5 HOH HOH . D 4 HOH A 4 6 6 HOH HOH . D 4 HOH A 5 7 7 HOH HOH . D 4 HOH A 6 8 8 HOH HOH . D 4 HOH A 7 9 9 HOH HOH . D 4 HOH A 8 10 10 HOH HOH . D 4 HOH A 9 11 11 HOH HOH . D 4 HOH A 10 12 12 HOH HOH . D 4 HOH A 11 13 13 HOH HOH . D 4 HOH A 12 14 14 HOH HOH . D 4 HOH A 13 15 15 HOH HOH . D 4 HOH A 14 16 16 HOH HOH . D 4 HOH A 15 17 17 HOH HOH . D 4 HOH A 16 18 18 HOH HOH . D 4 HOH A 17 19 19 HOH HOH . D 4 HOH A 18 20 20 HOH HOH . D 4 HOH A 19 21 21 HOH HOH . D 4 HOH A 20 22 22 HOH HOH . D 4 HOH A 21 23 23 HOH HOH . D 4 HOH A 22 24 24 HOH HOH . D 4 HOH A 23 25 25 HOH HOH . D 4 HOH A 24 26 26 HOH HOH . D 4 HOH A 25 27 27 HOH HOH . D 4 HOH A 26 262 28 HOH HOH . D 4 HOH A 27 263 29 HOH HOH . D 4 HOH A 28 264 31 HOH HOH . D 4 HOH A 29 265 32 HOH HOH . D 4 HOH A 30 266 266 HOH HOH . D 4 HOH A 31 267 33 HOH HOH . D 4 HOH A 32 268 268 HOH HOH . D 4 HOH A 33 269 269 HOH HOH . D 4 HOH A 34 270 270 HOH HOH . D 4 HOH A 35 271 271 HOH HOH . D 4 HOH A 36 272 272 HOH HOH . D 4 HOH A 37 273 273 HOH HOH . D 4 HOH A 38 274 274 HOH HOH . D 4 HOH A 39 275 275 HOH HOH . D 4 HOH A 40 276 34 HOH HOH . D 4 HOH A 41 277 35 HOH HOH . D 4 HOH A 42 278 278 HOH HOH . D 4 HOH A 43 279 36 HOH HOH . D 4 HOH A 44 280 280 HOH HOH . D 4 HOH A 45 281 37 HOH HOH . D 4 HOH A 46 282 282 HOH HOH . D 4 HOH A 47 283 283 HOH HOH . D 4 HOH A 48 284 284 HOH HOH . D 4 HOH A 49 285 285 HOH HOH . D 4 HOH A 50 286 286 HOH HOH . D 4 HOH A 51 287 38 HOH HOH . D 4 HOH A 52 288 39 HOH HOH . D 4 HOH A 53 289 289 HOH HOH . D 4 HOH A 54 290 41 HOH HOH . D 4 HOH A 55 291 291 HOH HOH . D 4 HOH A 56 292 42 HOH HOH . D 4 HOH A 57 293 43 HOH HOH . D 4 HOH A 58 294 44 HOH HOH . D 4 HOH A 59 295 295 HOH HOH . D 4 HOH A 60 296 296 HOH HOH . D 4 HOH A 61 297 297 HOH HOH . D 4 HOH A 62 298 45 HOH HOH . D 4 HOH A 63 299 299 HOH HOH . D 4 HOH A 64 300 300 HOH HOH . D 4 HOH A 65 301 46 HOH HOH . D 4 HOH A 66 302 47 HOH HOH . D 4 HOH A 67 303 48 HOH HOH . D 4 HOH A 68 304 49 HOH HOH . D 4 HOH A 69 305 305 HOH HOH . D 4 HOH A 70 306 306 HOH HOH . D 4 HOH A 71 307 307 HOH HOH . D 4 HOH A 72 308 308 HOH HOH . D 4 HOH A 73 309 309 HOH HOH . D 4 HOH A 74 310 310 HOH HOH . D 4 HOH A 75 311 311 HOH HOH . D 4 HOH A 76 312 50 HOH HOH . D 4 HOH A 77 313 313 HOH HOH . D 4 HOH A 78 314 314 HOH HOH . D 4 HOH A 79 315 315 HOH HOH . D 4 HOH A 80 316 316 HOH HOH . D 4 HOH A 81 317 317 HOH HOH . D 4 HOH A 82 318 318 HOH HOH . D 4 HOH A 83 319 319 HOH HOH . D 4 HOH A 84 320 320 HOH HOH . D 4 HOH A 85 321 321 HOH HOH . D 4 HOH A 86 322 322 HOH HOH . D 4 HOH A 87 323 323 HOH HOH . D 4 HOH A 88 324 324 HOH HOH . D 4 HOH A 89 325 325 HOH HOH . D 4 HOH A 90 326 326 HOH HOH . D 4 HOH A 91 327 327 HOH HOH . D 4 HOH A 92 328 328 HOH HOH . D 4 HOH A 93 329 51 HOH HOH . D 4 HOH A 94 330 52 HOH HOH . D 4 HOH A 95 331 54 HOH HOH . D 4 HOH A 96 332 55 HOH HOH . D 4 HOH A 97 333 57 HOH HOH . D 4 HOH A 98 334 58 HOH HOH . D 4 HOH A 99 335 59 HOH HOH . D 4 HOH A 100 336 60 HOH HOH . D 4 HOH A 101 337 61 HOH HOH . D 4 HOH A 102 338 62 HOH HOH . D 4 HOH A 103 339 63 HOH HOH . D 4 HOH A 104 340 65 HOH HOH . D 4 HOH A 105 341 66 HOH HOH . D 4 HOH A 106 342 67 HOH HOH . D 4 HOH A 107 343 68 HOH HOH . D 4 HOH A 108 344 69 HOH HOH . D 4 HOH A 109 345 70 HOH HOH . D 4 HOH A 110 346 71 HOH HOH . D 4 HOH A 111 347 72 HOH HOH . D 4 HOH A 112 348 73 HOH HOH . D 4 HOH A 113 349 74 HOH HOH . D 4 HOH A 114 350 75 HOH HOH . D 4 HOH A 115 351 76 HOH HOH . D 4 HOH A 116 352 77 HOH HOH . D 4 HOH A 117 353 78 HOH HOH . D 4 HOH A 118 354 79 HOH HOH . D 4 HOH A 119 355 83 HOH HOH . D 4 HOH A 120 356 84 HOH HOH . D 4 HOH A 121 357 85 HOH HOH . D 4 HOH A 122 358 86 HOH HOH . D 4 HOH A 123 359 87 HOH HOH . D 4 HOH A 124 360 88 HOH HOH . D 4 HOH A 125 361 89 HOH HOH . D 4 HOH A 126 362 90 HOH HOH . D 4 HOH A 127 363 91 HOH HOH . D 4 HOH A 128 364 92 HOH HOH . D 4 HOH A 129 365 93 HOH HOH . D 4 HOH A 130 366 94 HOH HOH . D 4 HOH A 131 367 95 HOH HOH . D 4 HOH A 132 368 97 HOH HOH . D 4 HOH A 133 369 98 HOH HOH . D 4 HOH A 134 370 99 HOH HOH . D 4 HOH A 135 371 100 HOH HOH . D 4 HOH A 136 372 101 HOH HOH . D 4 HOH A 137 373 102 HOH HOH . D 4 HOH A 138 374 103 HOH HOH . D 4 HOH A 139 375 104 HOH HOH . D 4 HOH A 140 376 105 HOH HOH . D 4 HOH A 141 377 107 HOH HOH . D 4 HOH A 142 378 108 HOH HOH . D 4 HOH A 143 379 109 HOH HOH . D 4 HOH A 144 380 110 HOH HOH . D 4 HOH A 145 381 111 HOH HOH . D 4 HOH A 146 382 112 HOH HOH . D 4 HOH A 147 383 113 HOH HOH . D 4 HOH A 148 384 115 HOH HOH . D 4 HOH A 149 385 116 HOH HOH . D 4 HOH A 150 386 117 HOH HOH . D 4 HOH A 151 387 118 HOH HOH . D 4 HOH A 152 388 119 HOH HOH . D 4 HOH A 153 389 120 HOH HOH . D 4 HOH A 154 390 122 HOH HOH . D 4 HOH A 155 391 123 HOH HOH . D 4 HOH A 156 392 124 HOH HOH . D 4 HOH A 157 393 125 HOH HOH . D 4 HOH A 158 394 126 HOH HOH . D 4 HOH A 159 395 127 HOH HOH . D 4 HOH A 160 396 128 HOH HOH . D 4 HOH A 161 397 129 HOH HOH . D 4 HOH A 162 398 131 HOH HOH . D 4 HOH A 163 399 132 HOH HOH . D 4 HOH A 164 400 133 HOH HOH . D 4 HOH A 165 401 134 HOH HOH . D 4 HOH A 166 402 135 HOH HOH . D 4 HOH A 167 403 136 HOH HOH . D 4 HOH A 168 404 138 HOH HOH . D 4 HOH A 169 405 139 HOH HOH . D 4 HOH A 170 406 140 HOH HOH . D 4 HOH A 171 407 141 HOH HOH . D 4 HOH A 172 408 142 HOH HOH . D 4 HOH A 173 409 143 HOH HOH . D 4 HOH A 174 410 144 HOH HOH . D 4 HOH A 175 411 145 HOH HOH . D 4 HOH A 176 412 146 HOH HOH . D 4 HOH A 177 413 147 HOH HOH . D 4 HOH A 178 414 148 HOH HOH . D 4 HOH A 179 415 149 HOH HOH . D 4 HOH A 180 416 150 HOH HOH . D 4 HOH A 181 417 152 HOH HOH . D 4 HOH A 182 418 153 HOH HOH . D 4 HOH A 183 419 154 HOH HOH . D 4 HOH A 184 420 155 HOH HOH . D 4 HOH A 185 421 157 HOH HOH . D 4 HOH A 186 422 158 HOH HOH . D 4 HOH A 187 423 159 HOH HOH . D 4 HOH A 188 424 160 HOH HOH . D 4 HOH A 189 425 161 HOH HOH . D 4 HOH A 190 426 162 HOH HOH . D 4 HOH A 191 427 163 HOH HOH . D 4 HOH A 192 428 165 HOH HOH . D 4 HOH A 193 429 166 HOH HOH . D 4 HOH A 194 430 167 HOH HOH . D 4 HOH A 195 431 169 HOH HOH . D 4 HOH A 196 432 170 HOH HOH . D 4 HOH A 197 433 171 HOH HOH . D 4 HOH A 198 434 172 HOH HOH . D 4 HOH A 199 435 173 HOH HOH . D 4 HOH A 200 436 174 HOH HOH . D 4 HOH A 201 437 175 HOH HOH . D 4 HOH A 202 438 176 HOH HOH . D 4 HOH A 203 439 178 HOH HOH . D 4 HOH A 204 440 179 HOH HOH . D 4 HOH A 205 441 180 HOH HOH . D 4 HOH A 206 442 181 HOH HOH . D 4 HOH A 207 443 182 HOH HOH . D 4 HOH A 208 444 183 HOH HOH . D 4 HOH A 209 445 184 HOH HOH . D 4 HOH A 210 446 185 HOH HOH . D 4 HOH A 211 447 186 HOH HOH . D 4 HOH A 212 448 187 HOH HOH . D 4 HOH A 213 449 188 HOH HOH . D 4 HOH A 214 450 189 HOH HOH . D 4 HOH A 215 451 190 HOH HOH . D 4 HOH A 216 452 192 HOH HOH . D 4 HOH A 217 453 193 HOH HOH . D 4 HOH A 218 454 195 HOH HOH . D 4 HOH A 219 455 196 HOH HOH . D 4 HOH A 220 456 197 HOH HOH . D 4 HOH A 221 457 199 HOH HOH . D 4 HOH A 222 458 200 HOH HOH . D 4 HOH A 223 459 201 HOH HOH . D 4 HOH A 224 460 202 HOH HOH . D 4 HOH A 225 461 203 HOH HOH . D 4 HOH A 226 462 204 HOH HOH . D 4 HOH A 227 463 205 HOH HOH . D 4 HOH A 228 464 206 HOH HOH . D 4 HOH A 229 465 207 HOH HOH . D 4 HOH A 230 466 208 HOH HOH . D 4 HOH A 231 467 209 HOH HOH . D 4 HOH A 232 468 211 HOH HOH . D 4 HOH A 233 469 212 HOH HOH . D 4 HOH A 234 470 213 HOH HOH . D 4 HOH A 235 471 214 HOH HOH . D 4 HOH A 236 472 215 HOH HOH . D 4 HOH A 237 473 216 HOH HOH . D 4 HOH A 238 474 217 HOH HOH . D 4 HOH A 239 475 218 HOH HOH . D 4 HOH A 240 476 219 HOH HOH . D 4 HOH A 241 477 220 HOH HOH . D 4 HOH A 242 478 222 HOH HOH . D 4 HOH A 243 479 223 HOH HOH . D 4 HOH A 244 480 224 HOH HOH . D 4 HOH A 245 481 225 HOH HOH . D 4 HOH A 246 482 226 HOH HOH . D 4 HOH A 247 483 227 HOH HOH . D 4 HOH A 248 484 228 HOH HOH . D 4 HOH A 249 485 230 HOH HOH . D 4 HOH A 250 486 231 HOH HOH . D 4 HOH A 251 487 233 HOH HOH . D 4 HOH A 252 488 234 HOH HOH . D 4 HOH A 253 489 235 HOH HOH . D 4 HOH A 254 490 236 HOH HOH . D 4 HOH A 255 491 237 HOH HOH . D 4 HOH A 256 492 238 HOH HOH . D 4 HOH A 257 493 239 HOH HOH . D 4 HOH A 258 494 240 HOH HOH . D 4 HOH A 259 495 241 HOH HOH . D 4 HOH A 260 496 242 HOH HOH . D 4 HOH A 261 497 243 HOH HOH . D 4 HOH A 262 498 244 HOH HOH . D 4 HOH A 263 499 245 HOH HOH . D 4 HOH A 264 500 247 HOH HOH . D 4 HOH A 265 501 248 HOH HOH . D 4 HOH A 266 502 249 HOH HOH . D 4 HOH A 267 503 250 HOH HOH . D 4 HOH A 268 504 251 HOH HOH . D 4 HOH A 269 505 252 HOH HOH . D 4 HOH A 270 506 253 HOH HOH . D 4 HOH A 271 507 254 HOH HOH . D 4 HOH A 272 508 255 HOH HOH . D 4 HOH A 273 509 257 HOH HOH . D 4 HOH A 274 510 258 HOH HOH . D 4 HOH A 275 511 259 HOH HOH . D 4 HOH A 276 512 261 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 47.294 25.291 21.992 1 31.09 ? C1 GOL 1 A 1 HETATM 2 O O1 GOL . . . B 2 48.408 25.584 21.169 1 30.04 ? O1 GOL 1 A 1 HETATM 3 C C2 GOL . . . B 2 47.577 24.073 22.863 1 27.01 ? C2 GOL 1 A 1 HETATM 4 O O2 GOL . . . B 2 47.96 22.962 22.067 1 21.27 ? O2 GOL 1 A 1 HETATM 5 C C3 GOL . . . B 2 46.347 23.721 23.688 1 23.73 ? C3 GOL 1 A 1 HETATM 6 O O3 GOL . . . B 2 45.334 23.142 22.879 1 24.99 ? O3 GOL 1 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #