data_3IRX
#
_model_server_result.job_id            TRa8I736aMtmDRYE_BW5Mw 
_model_server_result.datetime_utc      '2025-02-26 09:00:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3irx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":556}' 
#
_entry.id    3IRX 
#
_exptl.entry_id    3IRX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.601 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(E)-S-Methyl 5-(1-(3,7-Dimethyl-2-oxo-2,3-dihydrobenzo[d]oxazol-5-yl)-5-(5-methyl-1,3,4-oxadiazol-2-yl)pent-1-enyl)-2-methoxy-3-methy lbenzothioate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.08 
_cell.angle_gamma         90 
_cell.entry_id            3IRX 
_cell.length_a            164.639 
_cell.length_b            75.385 
_cell.length_c            110.662 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3IRX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H29 N3 O5 S' 
_chem_comp.formula_weight    507.601 
_chem_comp.id                UDR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(E)-S-Methyl 5-(1-(3,7-Dimethyl-2-oxo-2,3-dihydrobenzo[d]oxazol-5-yl)-5-(5-methyl-1,3,4-oxadiazol-2-yl)pent-1-enyl)-2-methoxy-3-methy lbenzothioate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'S-methyl 5-[(1E)-1-(3,7-dimethyl-2-oxo-2,3-dihydro-1,3-benzoxazol-5-yl)-5-(5-methyl-1,3,4-oxadiazol-2-yl)pent-1-en-1-yl]-2-methox y-3-methylbenzenecarbothioate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA OAS UDR sing 356 n n 
CAA HAA UDR sing 357 n n 
CAA HAAA UDR sing 358 n n 
CAA HAAB UDR sing 359 n n 
CAB SAV UDR sing 360 n n 
CAB HAB UDR sing 361 n n 
CAB HABA UDR sing 362 n n 
CAB HABB UDR sing 363 n n 
CAY CAC UDR sing 364 n n 
CAC HAC UDR sing 365 n n 
CAC HACA UDR sing 366 n n 
CAC HACB UDR sing 367 n n 
CAZ CAD UDR sing 368 n n 
CAD HAD UDR sing 369 n n 
CAD HADA UDR sing 370 n n 
CAD HADB UDR sing 371 n n 
CAE CBA UDR sing 372 n n 
CAE HAE UDR sing 373 n n 
CAE HAEA UDR sing 374 n n 
CAE HAEB UDR sing 375 n n 
NBJ CAF UDR sing 376 n n 
CAF HAF UDR sing 377 n n 
CAF HAFA UDR sing 378 e n 
CAF HAFB UDR sing 379 n n 
CAW OAG UDR doub 380 n n 
OAH CBG UDR doub 381 n n 
CAI CAX UDR doub 382 n n 
CAI CAN UDR sing 383 n n 
CAI HAI UDR sing 384 n n 
CBB CAJ UDR doub 385 n y 
CAJ CAY UDR sing 386 n y 
CAJ HAJ UDR sing 387 n n 
CBA CAK UDR doub 388 n y 
CAK CBC UDR sing 389 n y 
CAK HAK UDR sing 390 n n 
CBB CAL UDR sing 391 n y 
CAL CBE UDR doub 392 n y 
CAL HAL UDR sing 393 n n 
CBH CAM UDR sing 394 n y 
CAM CBC UDR doub 395 n y 
CAM HAM UDR sing 396 n n 
CAO CAN UDR sing 397 n n 
CAN HAN UDR sing 398 n n 
CAN HANA UDR sing 399 n n 
CAP CAO UDR sing 400 n n 
CAO HAO UDR sing 401 n n 
CAO HAOA UDR sing 402 n n 
CAP CBD UDR sing 403 n n 
CAP HAP UDR sing 404 n n 
CAP HAPA UDR sing 405 n n 
NAR NAQ UDR sing 406 n y 
NAQ CAZ UDR doub 407 n y 
CBD NAR UDR doub 408 n y 
CBF OAS UDR sing 409 n n 
CBD OAT UDR sing 410 n y 
OAT CAZ UDR sing 411 n y 
OAU CBG UDR sing 412 n n 
OAU CBI UDR sing 413 n n 
SAV CAW UDR sing 414 n n 
CBE CAW UDR sing 415 n n 
CBC CAX UDR sing 416 n n 
CAX CBB UDR sing 417 n n 
CAY CBF UDR doub 418 n y 
CBI CBA UDR sing 419 n y 
CBE CBF UDR sing 420 n y 
CBG NBJ UDR sing 421 n n 
CBI CBH UDR doub 422 n y 
NBJ CBH UDR sing 423 n n 
#
_atom_sites.entry_id                     3IRX 
_atom_sites.fract_transf_matrix[1][1]    0.006074 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00108 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013265 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009178 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        3 
_pdbx_nonpoly_scheme.mon_id           UDR 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      556 
_pdbx_nonpoly_scheme.auth_seq_num     556 
_pdbx_nonpoly_scheme.pdb_mon_id       UDR 
_pdbx_nonpoly_scheme.auth_mon_id      UDR 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA UDR . . . C 3 -52.076 -31.941 -35.07 1 72.04 ? CAA UDR 556 A 1 
HETATM 2 C CAB UDR . . . C 3 -54.551 -28.604 -37.926 1 78.36 ? CAB UDR 556 A 1 
HETATM 3 C CAC UDR . . . C 3 -48.785 -32.617 -35.565 1 69.91 ? CAC UDR 556 A 1 
HETATM 4 C CAD UDR . . . C 3 -52.804 -24.425 -36.77 1 76.5 ? CAD UDR 556 A 1 
HETATM 5 C CAE UDR . . . C 3 -46.034 -31.523 -43.585 1 75.67 ? CAE UDR 556 A 1 
HETATM 6 C CAF UDR . . . C 3 -50.936 -34.392 -41.197 1 78.13 ? CAF UDR 556 A 1 
HETATM 7 O OAG UDR . . . C 3 -52.566 -29.018 -35.273 1 73.89 ? OAG UDR 556 A 1 
HETATM 8 O OAH UDR . . . C 3 -49.642 -35.535 -43.514 1 81.08 ? OAH UDR 556 A 1 
HETATM 9 C CAI UDR . . . C 3 -47.866 -28.563 -39.773 1 75.72 ? CAI UDR 556 A 1 
HETATM 10 C CAJ UDR . . . C 3 -48.671 -31.186 -37.648 1 70.66 ? CAJ UDR 556 A 1 
HETATM 11 C CAK UDR . . . C 3 -47.283 -30.673 -41.546 1 75.35 ? CAK UDR 556 A 1 
HETATM 12 C CAL UDR . . . C 3 -50.242 -29.403 -38.045 1 71.72 ? CAL UDR 556 A 1 
HETATM 13 C CAM UDR . . . C 3 -49.2 -31.838 -40.671 1 76.06 ? CAM UDR 556 A 1 
HETATM 14 C CAN UDR . . . C 3 -47.891 -27.494 -38.881 1 76.3 ? CAN UDR 556 A 1 
HETATM 15 C CAO UDR . . . C 3 -47.839 -26.157 -39.62 1 75.34 ? CAO UDR 556 A 1 
HETATM 16 C CAP UDR . . . C 3 -49.231 -25.76 -40.106 1 77.35 ? CAP UDR 556 A 1 
HETATM 17 N NAQ UDR . . . C 3 -50.61 -23.524 -37.671 1 79.75 ? NAQ UDR 556 A 1 
HETATM 18 N NAR UDR . . . C 3 -49.727 -23.846 -38.47 1 79.28 ? NAR UDR 556 A 1 
HETATM 19 O OAS UDR . . . C 3 -51.018 -31.006 -34.86 1 71.41 ? OAS UDR 556 A 1 
HETATM 20 O OAT UDR . . . C 3 -51.175 -25.491 -38.47 1 77.02 ? OAT UDR 556 A 1 
HETATM 21 O OAU UDR . . . C 3 -48.146 -33.777 -43.444 1 77.58 ? OAU UDR 556 A 1 
HETATM 22 S SAV UDR . . . C 3 -52.96 -27.894 -37.565 1 80.56 ? SAV UDR 556 A 1 
HETATM 23 C CAW UDR . . . C 3 -52.136 -28.933 -36.418 1 75.02 ? CAW UDR 556 A 1 
HETATM 24 C CAX UDR . . . C 3 -48.454 -29.813 -39.608 1 74.92 ? CAX UDR 556 A 1 
HETATM 25 C CAY UDR . . . C 3 -49.311 -31.485 -36.45 1 70.61 ? CAY UDR 556 A 1 
HETATM 26 C CAZ UDR . . . C 3 -51.522 -24.489 -37.634 1 78.17 ? CAZ UDR 556 A 1 
HETATM 27 C CBA UDR . . . C 3 -47.154 -31.641 -42.543 1 76.2 ? CBA UDR 556 A 1 
HETATM 28 C CBB UDR . . . C 3 -49.126 -30.136 -38.446 1 72.37 ? CBB UDR 556 A 1 
HETATM 29 C CBC UDR . . . C 3 -48.306 -30.777 -40.614 1 76.11 ? CBC UDR 556 A 1 
HETATM 30 C CBD UDR . . . C 3 -50.008 -25.042 -39.006 1 77.46 ? CBD UDR 556 A 1 
HETATM 31 C CBE UDR . . . C 3 -50.885 -29.705 -36.851 1 73.31 ? CBE UDR 556 A 1 
HETATM 32 C CBF UDR . . . C 3 -50.413 -30.743 -36.049 1 72 ? CBF UDR 556 A 1 
HETATM 33 C CBG UDR . . . C 3 -49.22 -34.495 -43.005 1 78.98 ? CBG UDR 556 A 1 
HETATM 34 C CBH UDR . . . C 3 -49.064 -32.799 -41.662 1 76.84 ? CBH UDR 556 A 1 
HETATM 35 C CBI UDR . . . C 3 -48.041 -32.697 -42.597 1 76.77 ? CBI UDR 556 A 1 
HETATM 36 N NBJ UDR . . . C 3 -49.758 -33.903 -41.945 1 78.03 ? NBJ UDR 556 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           36 
#