data_3IS9 # _model_server_result.job_id rRs_W3OlYdaZ4TmnquRp7Q _model_server_result.datetime_utc '2025-02-26 09:04:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3is9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":556}' # _entry.id 3IS9 # _exptl.entry_id 3IS9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.504 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "dimethyl 3,3'-(6-methoxy-6-oxohex-1-ene-1,1-diyl)bis(5-cyano-6-methoxybenzoate)" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.55 _cell.angle_gamma 90 _cell.entry_id 3IS9 _cell.length_a 162.816 _cell.length_b 73.727 _cell.length_c 108.692 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IS9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H26 N2 O8' _chem_comp.formula_weight 506.504 _chem_comp.id AC7 _chem_comp.mon_nstd_flag . _chem_comp.name "dimethyl 3,3'-(6-methoxy-6-oxohex-1-ene-1,1-diyl)bis(5-cyano-6-methoxybenzoate)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 AC7 doub 1 n y C1 C6 AC7 sing 2 n y C1 H1 AC7 sing 3 n n C22 O1 AC7 sing 4 n n O1 C3 AC7 sing 5 n n C3 C2 AC7 sing 6 n y C7 C2 AC7 sing 7 n n C10 O2 AC7 sing 8 n n C23 O2 AC7 sing 9 n n C3 C4 AC7 doub 10 n y C21 O3 AC7 sing 11 n n O3 C20 AC7 sing 12 n n C77 C4 AC7 sing 13 n n C4 C5 AC7 sing 14 n y C5 C6 AC7 doub 15 n y C5 H5 AC7 sing 16 n n C7 O5 AC7 sing 17 n n O5 C24 AC7 sing 18 n n C6 C8 AC7 sing 19 n n O35 C7 AC7 doub 20 n n C16 O7 AC7 sing 21 n n C25 O7 AC7 sing 22 n n C8 C9 AC7 doub 23 n n C8 C13 AC7 sing 24 n n C17 C9 AC7 sing 25 n n C9 H9 AC7 sing 26 n n C15 C10 AC7 doub 27 n y C11 C10 AC7 sing 28 n y C12 C11 AC7 doub 29 n y C11 C82 AC7 sing 30 n n C13 C12 AC7 sing 31 n y C12 H12 AC7 sing 32 n n C13 C14 AC7 doub 33 n y C14 C15 AC7 sing 34 n y C14 H14 AC7 sing 35 n n C16 C15 AC7 sing 36 n n O36 C16 AC7 doub 37 n n C17 C18 AC7 sing 38 n n C17 H17 AC7 sing 39 n n C17 H17A AC7 sing 40 n n C19 C18 AC7 sing 41 n n C18 H18 AC7 sing 42 n n C18 H18A AC7 sing 43 n n C20 C19 AC7 sing 44 n n C19 H19 AC7 sing 45 n n C19 H19A AC7 sing 46 n n O37 C20 AC7 doub 47 n n C21 H21 AC7 sing 48 n n C21 H21A AC7 sing 49 n n C21 H21B AC7 sing 50 n n C22 H22 AC7 sing 51 n n C22 H22A AC7 sing 52 n n C22 H22B AC7 sing 53 n n C23 H23 AC7 sing 54 n n C23 H23A AC7 sing 55 n n C23 H23B AC7 sing 56 n n C24 H24 AC7 sing 57 n n C24 H24A AC7 sing 58 n n C24 H24B AC7 sing 59 n n C25 H25 AC7 sing 60 n n C25 H25A AC7 sing 61 n n C25 H25B AC7 sing 62 n n N69 C77 AC7 trip 63 n n C82 N74 AC7 trip 64 n n # _atom_sites.entry_id 3IS9 _atom_sites.fract_transf_matrix[1][1] 0.006142 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001033 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013564 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00933 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 AC7 A 1 556 1 AC7 AC7 . D 4 HOH A 1 557 32 HOH TIP . D 4 HOH A 2 558 33 HOH TIP . D 4 HOH A 3 559 34 HOH TIP . D 4 HOH A 4 560 35 HOH TIP . D 4 HOH A 5 561 37 HOH TIP . D 4 HOH A 6 562 38 HOH TIP . D 4 HOH A 7 563 39 HOH TIP . D 4 HOH A 8 564 42 HOH TIP . D 4 HOH A 9 565 44 HOH TIP . D 4 HOH A 10 566 45 HOH TIP . D 4 HOH A 11 567 46 HOH TIP . D 4 HOH A 12 568 50 HOH TIP . D 4 HOH A 13 569 53 HOH TIP . D 4 HOH A 14 570 61 HOH TIP . D 4 HOH A 15 571 63 HOH TIP . D 4 HOH A 16 572 64 HOH TIP . D 4 HOH A 17 573 65 HOH TIP . D 4 HOH A 18 574 69 HOH TIP . D 4 HOH A 19 575 71 HOH TIP . D 4 HOH A 20 576 77 HOH TIP . D 4 HOH A 21 577 78 HOH TIP . D 4 HOH A 22 578 80 HOH TIP . D 4 HOH A 23 579 81 HOH TIP . D 4 HOH A 24 580 83 HOH TIP . D 4 HOH A 25 581 84 HOH TIP . D 4 HOH A 26 582 85 HOH TIP . D 4 HOH A 27 583 88 HOH TIP . D 4 HOH A 28 584 89 HOH TIP . D 4 HOH A 29 585 90 HOH TIP . D 4 HOH A 30 586 91 HOH TIP . D 4 HOH A 31 587 92 HOH TIP . D 4 HOH A 32 588 94 HOH TIP . D 4 HOH A 33 589 95 HOH TIP . D 4 HOH A 34 590 97 HOH TIP . D 4 HOH A 35 591 98 HOH TIP . D 4 HOH A 36 592 100 HOH TIP . D 4 HOH A 37 593 105 HOH TIP . D 4 HOH A 38 594 106 HOH TIP . D 4 HOH A 39 595 108 HOH TIP . D 4 HOH A 40 596 109 HOH TIP . D 4 HOH A 41 597 112 HOH TIP . D 4 HOH A 42 598 115 HOH TIP . D 4 HOH A 43 599 116 HOH TIP . D 4 HOH A 44 600 118 HOH TIP . D 4 HOH A 45 601 125 HOH TIP . D 4 HOH A 46 602 127 HOH TIP . D 4 HOH A 47 603 129 HOH TIP . D 4 HOH A 48 604 131 HOH TIP . D 4 HOH A 49 605 135 HOH TIP . D 4 HOH A 50 606 136 HOH TIP . D 4 HOH A 51 607 137 HOH TIP . D 4 HOH A 52 608 139 HOH TIP . D 4 HOH A 53 609 142 HOH TIP . D 4 HOH A 54 610 146 HOH TIP . D 4 HOH A 55 611 159 HOH TIP . D 4 HOH A 56 612 161 HOH TIP . D 4 HOH A 57 613 163 HOH TIP . D 4 HOH A 58 614 166 HOH TIP . D 4 HOH A 59 615 169 HOH TIP . D 4 HOH A 60 616 170 HOH TIP . D 4 HOH A 61 617 174 HOH TIP . D 4 HOH A 62 618 177 HOH TIP . D 4 HOH A 63 619 178 HOH TIP . D 4 HOH A 64 620 179 HOH TIP . D 4 HOH A 65 621 180 HOH TIP . E 4 HOH B 1 429 29 HOH TIP . E 4 HOH B 2 430 30 HOH TIP . E 4 HOH B 3 431 31 HOH TIP . E 4 HOH B 4 432 41 HOH TIP . E 4 HOH B 5 433 43 HOH TIP . E 4 HOH B 6 434 48 HOH TIP . E 4 HOH B 7 435 49 HOH TIP . E 4 HOH B 8 436 54 HOH TIP . E 4 HOH B 9 437 56 HOH TIP . E 4 HOH B 10 438 57 HOH TIP . E 4 HOH B 11 439 58 HOH TIP . E 4 HOH B 12 440 67 HOH TIP . E 4 HOH B 13 441 68 HOH TIP . E 4 HOH B 14 442 70 HOH TIP . E 4 HOH B 15 443 72 HOH TIP . E 4 HOH B 16 444 73 HOH TIP . E 4 HOH B 17 445 74 HOH TIP . E 4 HOH B 18 446 75 HOH TIP . E 4 HOH B 19 447 76 HOH TIP . E 4 HOH B 20 448 79 HOH TIP . E 4 HOH B 21 449 82 HOH TIP . E 4 HOH B 22 450 86 HOH TIP . E 4 HOH B 23 451 87 HOH TIP . E 4 HOH B 24 452 96 HOH TIP . E 4 HOH B 25 453 99 HOH TIP . E 4 HOH B 26 454 101 HOH TIP . E 4 HOH B 27 455 102 HOH TIP . E 4 HOH B 28 456 104 HOH TIP . E 4 HOH B 29 457 107 HOH TIP . E 4 HOH B 30 458 110 HOH TIP . E 4 HOH B 31 459 111 HOH TIP . E 4 HOH B 32 460 117 HOH TIP . E 4 HOH B 33 461 119 HOH TIP . E 4 HOH B 34 462 121 HOH TIP . E 4 HOH B 35 463 122 HOH TIP . E 4 HOH B 36 464 123 HOH TIP . E 4 HOH B 37 465 124 HOH TIP . E 4 HOH B 38 466 126 HOH TIP . E 4 HOH B 39 467 128 HOH TIP . E 4 HOH B 40 468 130 HOH TIP . E 4 HOH B 41 469 133 HOH TIP . E 4 HOH B 42 470 134 HOH TIP . E 4 HOH B 43 471 140 HOH TIP . E 4 HOH B 44 472 143 HOH TIP . E 4 HOH B 45 473 144 HOH TIP . E 4 HOH B 46 474 145 HOH TIP . E 4 HOH B 47 475 150 HOH TIP . E 4 HOH B 48 476 151 HOH TIP . E 4 HOH B 49 477 153 HOH TIP . E 4 HOH B 50 478 154 HOH TIP . E 4 HOH B 51 479 155 HOH TIP . E 4 HOH B 52 480 156 HOH TIP . E 4 HOH B 53 481 157 HOH TIP . E 4 HOH B 54 482 162 HOH TIP . E 4 HOH B 55 483 164 HOH TIP . E 4 HOH B 56 484 165 HOH TIP . E 4 HOH B 57 485 168 HOH TIP . E 4 HOH B 58 486 173 HOH TIP . E 4 HOH B 59 487 176 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AC7 . . . C 3 50.078 -28.732 38.223 1 85.07 ? C1 AC7 556 A 1 HETATM 2 O O1 AC7 . . . C 3 51.161 -30.481 35.062 1 82.89 ? O1 AC7 556 A 1 HETATM 3 C C2 AC7 . . . C 3 50.88 -29.092 37.094 1 84.52 ? C2 AC7 556 A 1 HETATM 4 O O2 AC7 . . . C 3 46.277 -33.078 43.31 1 98.49 ? O2 AC7 556 A 1 HETATM 5 C C3 AC7 . . . C 3 50.402 -30.107 36.183 1 83.78 ? C3 AC7 556 A 1 HETATM 6 O O3 AC7 . . . C 3 50.884 -23.429 36.935 1 88.49 ? O3 AC7 556 A 1 HETATM 7 C C4 AC7 . . . C 3 49.081 -30.638 36.372 1 83.25 ? C4 AC7 556 A 1 HETATM 8 C C5 AC7 . . . C 3 48.314 -30.269 37.484 1 84.73 ? C5 AC7 556 A 1 HETATM 9 O O5 AC7 . . . C 3 52.723 -27.486 37.932 1 86.09 ? O5 AC7 556 A 1 HETATM 10 C C6 AC7 . . . C 3 48.763 -29.287 38.409 1 86.88 ? C6 AC7 556 A 1 HETATM 11 C C7 AC7 . . . C 3 52.26 -28.457 36.945 1 85.37 ? C7 AC7 556 A 1 HETATM 12 O O7 AC7 . . . C 3 48.485 -34.645 42.263 1 100.02 ? O7 AC7 556 A 1 HETATM 13 C C8 AC7 . . . C 3 47.862 -28.875 39.616 1 88.94 ? C8 AC7 556 A 1 HETATM 14 C C9 AC7 . . . C 3 47.397 -27.595 39.791 1 89 ? C9 AC7 556 A 1 HETATM 15 C C10 AC7 . . . C 3 46.65 -32.064 42.43 1 97.16 ? C10 AC7 556 A 1 HETATM 16 C C11 AC7 . . . C 3 45.941 -30.801 42.427 1 95.74 ? C11 AC7 556 A 1 HETATM 17 C C12 AC7 . . . C 3 46.331 -29.776 41.507 1 93.33 ? C12 AC7 556 A 1 HETATM 18 C C13 AC7 . . . C 3 47.439 -29.964 40.624 1 91.84 ? C13 AC7 556 A 1 HETATM 19 C C14 AC7 . . . C 3 48.122 -31.197 40.659 1 94.25 ? C14 AC7 556 A 1 HETATM 20 C C15 AC7 . . . C 3 47.775 -32.23 41.54 1 97.29 ? C15 AC7 556 A 1 HETATM 21 C C16 AC7 . . . C 3 48.631 -33.481 41.421 1 99.01 ? C16 AC7 556 A 1 HETATM 22 C C17 AC7 . . . C 3 47.676 -26.412 38.88 1 87.76 ? C17 AC7 556 A 1 HETATM 23 C C18 AC7 . . . C 3 48.843 -25.593 39.388 1 87.34 ? C18 AC7 556 A 1 HETATM 24 C C19 AC7 . . . C 3 49.06 -24.398 38.459 1 88.2 ? C19 AC7 556 A 1 HETATM 25 C C20 AC7 . . . C 3 50.336 -24.569 37.655 1 88.42 ? C20 AC7 556 A 1 HETATM 26 C C21 AC7 . . . C 3 52.117 -23.499 36.209 1 88.81 ? C21 AC7 556 A 1 HETATM 27 C C22 AC7 . . . C 3 51.012 -29.89 33.754 1 80.39 ? C22 AC7 556 A 1 HETATM 28 C C23 AC7 . . . C 3 45.257 -34.032 42.922 1 99.31 ? C23 AC7 556 A 1 HETATM 29 C C24 AC7 . . . C 3 53.992 -27.651 38.572 1 82.37 ? C24 AC7 556 A 1 HETATM 30 C C25 AC7 . . . C 3 49.161 -35.851 41.87 1 100.99 ? C25 AC7 556 A 1 HETATM 31 O O35 AC7 . . . C 3 52.996 -28.719 35.99 1 85.33 ? O35 AC7 556 A 1 HETATM 32 O O36 AC7 . . . C 3 49.516 -33.531 40.561 1 100.16 ? O36 AC7 556 A 1 HETATM 33 O O37 AC7 . . . C 3 50.915 -25.654 37.596 1 88.79 ? O37 AC7 556 A 1 HETATM 34 N N69 AC7 . . . C 3 48.174 -32.342 34.886 1 82.52 ? N69 AC7 556 A 1 HETATM 35 N N74 AC7 . . . C 3 44.019 -30.367 43.928 1 95 ? N74 AC7 556 A 1 HETATM 36 C C77 AC7 . . . C 3 48.602 -31.538 35.597 1 82.08 ? C77 AC7 556 A 1 HETATM 37 C C82 AC7 . . . C 3 44.921 -30.579 43.215 1 95.44 ? C82 AC7 556 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 37 #