data_3ITM # _model_server_result.job_id 2HZ5CIQWKvbCY1adXhQF4Q _model_server_result.datetime_utc '2024-11-16 09:49:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3itm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":4}' # _entry.id 3ITM # _exptl.entry_id 3ITM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ITM _cell.length_a 108.017 _cell.length_b 108.017 _cell.length_c 515.563 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ITM _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 PISA dimeric 2 software_defined_assembly 5 PISA dimeric 2 software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 A,B,E,F,I,J 5 1 C,D,G,H,K,L 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E ZN ZN . A ZN 1 1_555 A NE2 HIS 86 A HIS 660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? metalc ? metalc2 E ZN ZN . A ZN 1 1_555 A NE2 HIS 122 A HIS 696 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc3 E ZN ZN . A ZN 1 1_555 A OD2 ASP 123 A ASP 697 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc4 E ZN ZN . A ZN 1 1_555 A OD1 ASP 234 A ASP 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc5 F ZN ZN . B ZN 2 1_555 B NE2 HIS 86 B HIS 660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc6 F ZN ZN . B ZN 2 1_555 B NE2 HIS 122 B HIS 696 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc7 F ZN ZN . B ZN 2 1_555 B OD2 ASP 123 B ASP 697 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc8 F ZN ZN . B ZN 2 1_555 B OD1 ASP 234 B ASP 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc9 G ZN ZN . C ZN 3 1_555 C NE2 HIS 86 C HIS 660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc10 G ZN ZN . C ZN 3 1_555 C NE2 HIS 122 C HIS 696 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc11 G ZN ZN . C ZN 3 1_555 C OD2 ASP 123 C ASP 697 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc12 G ZN ZN . C ZN 3 1_555 C OD1 ASP 234 C ASP 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc13 H ZN ZN . D ZN 4 1_555 D NE2 HIS 86 D HIS 660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc14 H ZN ZN . D ZN 4 1_555 D NE2 HIS 122 D HIS 696 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc15 H ZN ZN . D ZN 4 1_555 D OD2 ASP 123 D ASP 697 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc16 H ZN ZN . D ZN 4 1_555 D OD1 ASP 234 D ASP 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3ITM _atom_sites.fract_transf_matrix[1][1] 0.009258 _atom_sites.fract_transf_matrix[1][2] 0.005345 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01069 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00194 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN A 1 1 1 ZN ZN . F 2 ZN B 1 2 2 ZN ZN . G 2 ZN C 1 3 3 ZN ZN . H 2 ZN D 1 4 4 ZN ZN . I 3 HOH A 1 3 3 HOH HOH . I 3 HOH A 2 4 4 HOH HOH . I 3 HOH A 3 10 10 HOH HOH . I 3 HOH A 4 23 23 HOH HOH . I 3 HOH A 5 28 28 HOH HOH . I 3 HOH A 6 30 30 HOH HOH . I 3 HOH A 7 38 38 HOH HOH . I 3 HOH A 8 40 40 HOH HOH . I 3 HOH A 9 42 42 HOH HOH . I 3 HOH A 10 46 46 HOH HOH . I 3 HOH A 11 48 48 HOH HOH . I 3 HOH A 12 50 50 HOH HOH . I 3 HOH A 13 51 51 HOH HOH . I 3 HOH A 14 52 52 HOH HOH . I 3 HOH A 15 56 56 HOH HOH . I 3 HOH A 16 57 57 HOH HOH . I 3 HOH A 17 62 62 HOH HOH . I 3 HOH A 18 65 65 HOH HOH . I 3 HOH A 19 67 67 HOH HOH . I 3 HOH A 20 68 68 HOH HOH . I 3 HOH A 21 69 69 HOH HOH . I 3 HOH A 22 74 74 HOH HOH . I 3 HOH A 23 77 77 HOH HOH . I 3 HOH A 24 78 78 HOH HOH . I 3 HOH A 25 86 86 HOH HOH . I 3 HOH A 26 87 87 HOH HOH . I 3 HOH A 27 97 97 HOH HOH . I 3 HOH A 28 99 99 HOH HOH . I 3 HOH A 29 101 101 HOH HOH . I 3 HOH A 30 104 104 HOH HOH . I 3 HOH A 31 117 117 HOH HOH . I 3 HOH A 32 120 120 HOH HOH . I 3 HOH A 33 121 121 HOH HOH . I 3 HOH A 34 126 126 HOH HOH . I 3 HOH A 35 127 127 HOH HOH . I 3 HOH A 36 128 128 HOH HOH . I 3 HOH A 37 132 132 HOH HOH . I 3 HOH A 38 137 137 HOH HOH . I 3 HOH A 39 141 141 HOH HOH . I 3 HOH A 40 147 147 HOH HOH . I 3 HOH A 41 148 148 HOH HOH . I 3 HOH A 42 150 150 HOH HOH . I 3 HOH A 43 151 151 HOH HOH . J 3 HOH B 1 1 1 HOH HOH . J 3 HOH B 2 7 7 HOH HOH . J 3 HOH B 3 9 9 HOH HOH . J 3 HOH B 4 11 11 HOH HOH . J 3 HOH B 5 13 13 HOH HOH . J 3 HOH B 6 14 14 HOH HOH . J 3 HOH B 7 16 16 HOH HOH . J 3 HOH B 8 17 17 HOH HOH . J 3 HOH B 9 19 19 HOH HOH . J 3 HOH B 10 22 22 HOH HOH . J 3 HOH B 11 24 24 HOH HOH . J 3 HOH B 12 27 27 HOH HOH . J 3 HOH B 13 29 29 HOH HOH . J 3 HOH B 14 33 33 HOH HOH . J 3 HOH B 15 36 36 HOH HOH . J 3 HOH B 16 39 39 HOH HOH . J 3 HOH B 17 41 41 HOH HOH . J 3 HOH B 18 44 44 HOH HOH . J 3 HOH B 19 45 45 HOH HOH . J 3 HOH B 20 47 47 HOH HOH . J 3 HOH B 21 49 49 HOH HOH . J 3 HOH B 22 54 54 HOH HOH . J 3 HOH B 23 55 55 HOH HOH . J 3 HOH B 24 58 58 HOH HOH . J 3 HOH B 25 59 59 HOH HOH . J 3 HOH B 26 61 61 HOH HOH . J 3 HOH B 27 63 63 HOH HOH . J 3 HOH B 28 64 64 HOH HOH . J 3 HOH B 29 70 70 HOH HOH . J 3 HOH B 30 72 72 HOH HOH . J 3 HOH B 31 75 75 HOH HOH . J 3 HOH B 32 84 84 HOH HOH . J 3 HOH B 33 85 85 HOH HOH . J 3 HOH B 34 88 88 HOH HOH . J 3 HOH B 35 89 89 HOH HOH . J 3 HOH B 36 91 91 HOH HOH . J 3 HOH B 37 92 92 HOH HOH . J 3 HOH B 38 94 94 HOH HOH . J 3 HOH B 39 96 96 HOH HOH . J 3 HOH B 40 98 98 HOH HOH . J 3 HOH B 41 100 100 HOH HOH . J 3 HOH B 42 102 102 HOH HOH . J 3 HOH B 43 103 103 HOH HOH . J 3 HOH B 44 108 108 HOH HOH . J 3 HOH B 45 110 110 HOH HOH . J 3 HOH B 46 114 114 HOH HOH . J 3 HOH B 47 115 115 HOH HOH . J 3 HOH B 48 118 118 HOH HOH . J 3 HOH B 49 123 123 HOH HOH . J 3 HOH B 50 125 125 HOH HOH . J 3 HOH B 51 130 130 HOH HOH . J 3 HOH B 52 134 134 HOH HOH . J 3 HOH B 53 136 136 HOH HOH . J 3 HOH B 54 138 138 HOH HOH . J 3 HOH B 55 139 139 HOH HOH . J 3 HOH B 56 142 142 HOH HOH . J 3 HOH B 57 145 145 HOH HOH . J 3 HOH B 58 152 152 HOH HOH . J 3 HOH B 59 153 153 HOH HOH . J 3 HOH B 60 154 154 HOH HOH . J 3 HOH B 61 155 155 HOH HOH . J 3 HOH B 62 157 157 HOH HOH . J 3 HOH B 63 160 160 HOH HOH . J 3 HOH B 64 162 162 HOH HOH . J 3 HOH B 65 920 2 HOH HOH . K 3 HOH C 1 15 15 HOH HOH . K 3 HOH C 2 18 18 HOH HOH . K 3 HOH C 3 20 20 HOH HOH . K 3 HOH C 4 25 25 HOH HOH . K 3 HOH C 5 31 31 HOH HOH . K 3 HOH C 6 32 32 HOH HOH . K 3 HOH C 7 34 34 HOH HOH . K 3 HOH C 8 35 35 HOH HOH . K 3 HOH C 9 66 66 HOH HOH . K 3 HOH C 10 71 71 HOH HOH . K 3 HOH C 11 76 76 HOH HOH . K 3 HOH C 12 79 79 HOH HOH . K 3 HOH C 13 80 80 HOH HOH . K 3 HOH C 14 82 82 HOH HOH . K 3 HOH C 15 95 95 HOH HOH . K 3 HOH C 16 107 107 HOH HOH . K 3 HOH C 17 109 109 HOH HOH . K 3 HOH C 18 111 111 HOH HOH . K 3 HOH C 19 113 113 HOH HOH . K 3 HOH C 20 116 116 HOH HOH . K 3 HOH C 21 135 135 HOH HOH . K 3 HOH C 22 144 144 HOH HOH . K 3 HOH C 23 158 158 HOH HOH . K 3 HOH C 24 159 159 HOH HOH . K 3 HOH C 25 164 164 HOH HOH . L 3 HOH D 1 5 5 HOH HOH . L 3 HOH D 2 6 6 HOH HOH . L 3 HOH D 3 8 8 HOH HOH . L 3 HOH D 4 12 12 HOH HOH . L 3 HOH D 5 21 21 HOH HOH . L 3 HOH D 6 26 26 HOH HOH . L 3 HOH D 7 37 37 HOH HOH . L 3 HOH D 8 43 43 HOH HOH . L 3 HOH D 9 53 53 HOH HOH . L 3 HOH D 10 60 60 HOH HOH . L 3 HOH D 11 73 73 HOH HOH . L 3 HOH D 12 81 81 HOH HOH . L 3 HOH D 13 83 83 HOH HOH . L 3 HOH D 14 90 90 HOH HOH . L 3 HOH D 15 93 93 HOH HOH . L 3 HOH D 16 105 105 HOH HOH . L 3 HOH D 17 106 106 HOH HOH . L 3 HOH D 18 112 112 HOH HOH . L 3 HOH D 19 119 119 HOH HOH . L 3 HOH D 20 122 122 HOH HOH . L 3 HOH D 21 124 124 HOH HOH . L 3 HOH D 22 131 131 HOH HOH . L 3 HOH D 23 133 133 HOH HOH . L 3 HOH D 24 140 140 HOH HOH . L 3 HOH D 25 143 143 HOH HOH . L 3 HOH D 26 146 146 HOH HOH . L 3 HOH D 27 149 149 HOH HOH . L 3 HOH D 28 156 156 HOH HOH . L 3 HOH D 29 161 161 HOH HOH . L 3 HOH D 30 163 163 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 2 _atom_site.Cartn_x 8.162 _atom_site.Cartn_y -51.854 _atom_site.Cartn_z -18.555 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.83 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 4 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #