data_3IU8 # _model_server_result.job_id JLhAAWuJnEraWqvxrXEKiw _model_server_result.datetime_utc '2024-11-22 19:33:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3iu8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":286}' # _entry.id 3IU8 # _exptl.entry_id 3IU8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3IU8 _cell.length_a 105.728 _cell.length_b 105.728 _cell.length_c 50.427 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IU8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 52.864 91.563134 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -52.864 91.563134 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 117 A HIS 114 1_555 D NI NI . A NI 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc2 A OD1 ASP 134 A ASP 131 1_555 B NI NI . A NI 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc3 A OD2 ASP 134 A ASP 131 1_555 B NI NI . A NI 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc4 A OD2 ASP 145 A ASP 142 1_555 B NI NI . A NI 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc5 A OD1 ASP 145 A ASP 142 1_555 C NI NI . A NI 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc6 A NE2 HIS 208 A HIS 205 1_555 C NI NI . A NI 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc7 A OE2 GLU 241 A GLU 238 1_555 C NI NI . A NI 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc8 A OE2 GLU 272 A GLU 269 1_555 B NI NI . A NI 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? metalc ? metalc9 A OE1 GLU 272 A GLU 269 1_555 C NI NI . A NI 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? metalc ? metalc10 B NI NI . A NI 286 1_555 E N3 T03 . A T03 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc11 C NI NI . A NI 287 1_555 E N2 T03 . A T03 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc12 D NI NI . A NI 288 1_555 E N1 T03 . A T03 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc13 D NI NI . A NI 288 1_555 H CL CL . A CL 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc14 D NI NI . A NI 288 1_555 I O HOH . A HOH 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3IU8 _atom_sites.fract_transf_matrix[1][1] 0.009458 _atom_sites.fract_transf_matrix[1][2] 0.005461 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010921 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019831 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 286 1 NI NI . C 2 NI A 1 287 2 NI NI . D 2 NI A 1 288 3 NI NI . E 3 T03 A 1 289 1 T03 T03 . F 4 SO4 A 1 290 1 SO4 SO4 . G 5 CL A 1 291 1 CL CL . H 5 CL A 1 292 2 CL CL . I 6 HOH A 1 293 2 HOH HOH . I 6 HOH A 2 294 3 HOH HOH . I 6 HOH A 3 295 4 HOH HOH . I 6 HOH A 4 296 5 HOH HOH . I 6 HOH A 5 297 6 HOH HOH . I 6 HOH A 6 298 7 HOH HOH . I 6 HOH A 7 299 8 HOH HOH . I 6 HOH A 8 300 9 HOH HOH . I 6 HOH A 9 301 10 HOH HOH . I 6 HOH A 10 302 11 HOH HOH . I 6 HOH A 11 303 12 HOH HOH . I 6 HOH A 12 304 13 HOH HOH . I 6 HOH A 13 305 14 HOH HOH . I 6 HOH A 14 306 15 HOH HOH . I 6 HOH A 15 307 16 HOH HOH . I 6 HOH A 16 308 17 HOH HOH . I 6 HOH A 17 309 18 HOH HOH . I 6 HOH A 18 310 19 HOH HOH . I 6 HOH A 19 311 20 HOH HOH . I 6 HOH A 20 312 21 HOH HOH . I 6 HOH A 21 313 22 HOH HOH . I 6 HOH A 22 314 23 HOH HOH . I 6 HOH A 23 315 24 HOH HOH . I 6 HOH A 24 316 25 HOH HOH . I 6 HOH A 25 317 26 HOH HOH . I 6 HOH A 26 318 27 HOH HOH . I 6 HOH A 27 319 28 HOH HOH . I 6 HOH A 28 320 29 HOH HOH . I 6 HOH A 29 321 30 HOH HOH . I 6 HOH A 30 322 31 HOH HOH . I 6 HOH A 31 323 32 HOH HOH . I 6 HOH A 32 324 33 HOH HOH . I 6 HOH A 33 325 34 HOH HOH . I 6 HOH A 34 326 35 HOH HOH . I 6 HOH A 35 327 36 HOH HOH . I 6 HOH A 36 328 37 HOH HOH . I 6 HOH A 37 329 38 HOH HOH . I 6 HOH A 38 330 39 HOH HOH . I 6 HOH A 39 331 40 HOH HOH . I 6 HOH A 40 332 41 HOH HOH . I 6 HOH A 41 333 42 HOH HOH . I 6 HOH A 42 334 43 HOH HOH . I 6 HOH A 43 335 44 HOH HOH . I 6 HOH A 44 336 45 HOH HOH . I 6 HOH A 45 337 46 HOH HOH . I 6 HOH A 46 338 47 HOH HOH . I 6 HOH A 47 339 48 HOH HOH . I 6 HOH A 48 340 49 HOH HOH . I 6 HOH A 49 341 50 HOH HOH . I 6 HOH A 50 342 51 HOH HOH . I 6 HOH A 51 343 52 HOH HOH . I 6 HOH A 52 344 53 HOH HOH . I 6 HOH A 53 345 54 HOH HOH . I 6 HOH A 54 346 55 HOH HOH . I 6 HOH A 55 347 56 HOH HOH . I 6 HOH A 56 348 57 HOH HOH . I 6 HOH A 57 349 58 HOH HOH . I 6 HOH A 58 350 59 HOH HOH . I 6 HOH A 59 351 60 HOH HOH . I 6 HOH A 60 352 61 HOH HOH . I 6 HOH A 61 353 62 HOH HOH . I 6 HOH A 62 354 63 HOH HOH . I 6 HOH A 63 355 64 HOH HOH . I 6 HOH A 64 356 65 HOH HOH . I 6 HOH A 65 357 66 HOH HOH . I 6 HOH A 66 358 67 HOH HOH . I 6 HOH A 67 359 68 HOH HOH . I 6 HOH A 68 360 69 HOH HOH . I 6 HOH A 69 361 70 HOH HOH . I 6 HOH A 70 362 71 HOH HOH . I 6 HOH A 71 363 72 HOH HOH . I 6 HOH A 72 364 73 HOH HOH . I 6 HOH A 73 365 74 HOH HOH . I 6 HOH A 74 366 75 HOH HOH . I 6 HOH A 75 367 76 HOH HOH . I 6 HOH A 76 368 77 HOH HOH . I 6 HOH A 77 369 78 HOH HOH . I 6 HOH A 78 370 79 HOH HOH . I 6 HOH A 79 371 80 HOH HOH . I 6 HOH A 80 372 81 HOH HOH . I 6 HOH A 81 373 82 HOH HOH . I 6 HOH A 82 374 83 HOH HOH . I 6 HOH A 83 375 84 HOH HOH . I 6 HOH A 84 376 85 HOH HOH . I 6 HOH A 85 377 86 HOH HOH . I 6 HOH A 86 378 87 HOH HOH . I 6 HOH A 87 379 88 HOH HOH . I 6 HOH A 88 380 89 HOH HOH . I 6 HOH A 89 381 90 HOH HOH . I 6 HOH A 90 382 91 HOH HOH . I 6 HOH A 91 383 92 HOH HOH . I 6 HOH A 92 384 93 HOH HOH . I 6 HOH A 93 385 94 HOH HOH . I 6 HOH A 94 386 95 HOH HOH . I 6 HOH A 95 387 96 HOH HOH . I 6 HOH A 96 388 97 HOH HOH . I 6 HOH A 97 389 98 HOH HOH . I 6 HOH A 98 390 99 HOH HOH . I 6 HOH A 99 391 100 HOH HOH . I 6 HOH A 100 392 101 HOH HOH . I 6 HOH A 101 393 102 HOH HOH . I 6 HOH A 102 394 103 HOH HOH . I 6 HOH A 103 395 104 HOH HOH . I 6 HOH A 104 396 105 HOH HOH . I 6 HOH A 105 397 106 HOH HOH . I 6 HOH A 106 398 107 HOH HOH . I 6 HOH A 107 399 108 HOH HOH . I 6 HOH A 108 400 109 HOH HOH . I 6 HOH A 109 401 110 HOH HOH . I 6 HOH A 110 402 111 HOH HOH . I 6 HOH A 111 403 112 HOH HOH . I 6 HOH A 112 404 113 HOH HOH . I 6 HOH A 113 405 114 HOH HOH . I 6 HOH A 114 406 115 HOH HOH . I 6 HOH A 115 407 116 HOH HOH . I 6 HOH A 116 408 117 HOH HOH . I 6 HOH A 117 409 118 HOH HOH . I 6 HOH A 118 410 119 HOH HOH . I 6 HOH A 119 411 120 HOH HOH . I 6 HOH A 120 412 121 HOH HOH . I 6 HOH A 121 413 122 HOH HOH . I 6 HOH A 122 414 123 HOH HOH . I 6 HOH A 123 415 124 HOH HOH . I 6 HOH A 124 416 125 HOH HOH . I 6 HOH A 125 417 126 HOH HOH . I 6 HOH A 126 418 127 HOH HOH . I 6 HOH A 127 419 128 HOH HOH . I 6 HOH A 128 420 129 HOH HOH . I 6 HOH A 129 421 130 HOH HOH . I 6 HOH A 130 422 131 HOH HOH . I 6 HOH A 131 423 132 HOH HOH . I 6 HOH A 132 424 133 HOH HOH . I 6 HOH A 133 425 134 HOH HOH . I 6 HOH A 134 426 135 HOH HOH . I 6 HOH A 135 427 136 HOH HOH . I 6 HOH A 136 428 137 HOH HOH . I 6 HOH A 137 429 138 HOH HOH . I 6 HOH A 138 430 139 HOH HOH . I 6 HOH A 139 431 140 HOH HOH . I 6 HOH A 140 432 141 HOH HOH . I 6 HOH A 141 433 142 HOH HOH . I 6 HOH A 142 434 143 HOH HOH . I 6 HOH A 143 435 144 HOH HOH . I 6 HOH A 144 436 145 HOH HOH . I 6 HOH A 145 437 146 HOH HOH . I 6 HOH A 146 438 147 HOH HOH . I 6 HOH A 147 439 148 HOH HOH . I 6 HOH A 148 440 149 HOH HOH . I 6 HOH A 149 441 150 HOH HOH . I 6 HOH A 150 442 151 HOH HOH . I 6 HOH A 151 443 152 HOH HOH . I 6 HOH A 152 444 153 HOH HOH . I 6 HOH A 153 445 154 HOH HOH . I 6 HOH A 154 446 155 HOH HOH . I 6 HOH A 155 447 156 HOH HOH . I 6 HOH A 156 448 157 HOH HOH . I 6 HOH A 157 449 158 HOH HOH . I 6 HOH A 158 450 159 HOH HOH . I 6 HOH A 159 451 160 HOH HOH . I 6 HOH A 160 452 161 HOH HOH . I 6 HOH A 161 453 162 HOH HOH . I 6 HOH A 162 454 1 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 10.688 _atom_site.Cartn_y 42.675 _atom_site.Cartn_z 0.611 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 8.9 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 286 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #