data_3IUY # _model_server_result.job_id vOWZd7fdFYrgSqFmQ9Rq7Q _model_server_result.datetime_utc '2024-11-04 22:57:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3iuy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":160}' # _entry.id 3IUY # _exptl.entry_id 3IUY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.36 _cell.angle_gamma 90 _cell.entry_id 3IUY _cell.length_a 56.442 _cell.length_b 61.251 _cell.length_c 65.787 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IUY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 3IUY _atom_sites.fract_transf_matrix[1][1] 0.017717 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001975 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016326 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015295 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AMP A 1 160 160 AMP AMP . D 3 CL A 1 1 1 CL CL . E 2 AMP B 1 160 160 AMP AMP . F 3 CL B 1 1 1 CL CL . G 4 HOH A 1 3 3 HOH HOH . G 4 HOH A 2 5 5 HOH HOH . G 4 HOH A 3 7 7 HOH HOH . G 4 HOH A 4 8 8 HOH HOH . G 4 HOH A 5 9 9 HOH HOH . G 4 HOH A 6 11 11 HOH HOH . G 4 HOH A 7 12 12 HOH HOH . G 4 HOH A 8 17 17 HOH HOH . G 4 HOH A 9 19 19 HOH HOH . G 4 HOH A 10 20 20 HOH HOH . G 4 HOH A 11 21 21 HOH HOH . G 4 HOH A 12 22 22 HOH HOH . G 4 HOH A 13 23 23 HOH HOH . G 4 HOH A 14 25 25 HOH HOH . G 4 HOH A 15 26 26 HOH HOH . G 4 HOH A 16 27 27 HOH HOH . G 4 HOH A 17 28 28 HOH HOH . G 4 HOH A 18 29 29 HOH HOH . G 4 HOH A 19 30 30 HOH HOH . G 4 HOH A 20 31 31 HOH HOH . G 4 HOH A 21 33 33 HOH HOH . G 4 HOH A 22 34 34 HOH HOH . G 4 HOH A 23 35 35 HOH HOH . G 4 HOH A 24 39 39 HOH HOH . G 4 HOH A 25 40 40 HOH HOH . G 4 HOH A 26 41 41 HOH HOH . G 4 HOH A 27 45 45 HOH HOH . G 4 HOH A 28 53 53 HOH HOH . G 4 HOH A 29 55 55 HOH HOH . G 4 HOH A 30 56 56 HOH HOH . G 4 HOH A 31 58 58 HOH HOH . G 4 HOH A 32 59 59 HOH HOH . G 4 HOH A 33 60 60 HOH HOH . G 4 HOH A 34 65 65 HOH HOH . G 4 HOH A 35 67 67 HOH HOH . G 4 HOH A 36 68 68 HOH HOH . G 4 HOH A 37 69 69 HOH HOH . G 4 HOH A 38 73 73 HOH HOH . G 4 HOH A 39 75 75 HOH HOH . G 4 HOH A 40 76 76 HOH HOH . G 4 HOH A 41 78 78 HOH HOH . G 4 HOH A 42 88 88 HOH HOH . G 4 HOH A 43 90 90 HOH HOH . G 4 HOH A 44 96 96 HOH HOH . G 4 HOH A 45 97 97 HOH HOH . G 4 HOH A 46 98 98 HOH HOH . G 4 HOH A 47 101 101 HOH HOH . G 4 HOH A 48 103 103 HOH HOH . G 4 HOH A 49 104 104 HOH HOH . G 4 HOH A 50 106 106 HOH HOH . G 4 HOH A 51 112 112 HOH HOH . G 4 HOH A 52 114 114 HOH HOH . G 4 HOH A 53 115 115 HOH HOH . G 4 HOH A 54 116 116 HOH HOH . G 4 HOH A 55 117 117 HOH HOH . G 4 HOH A 56 118 118 HOH HOH . G 4 HOH A 57 120 120 HOH HOH . G 4 HOH A 58 121 121 HOH HOH . G 4 HOH A 59 123 123 HOH HOH . G 4 HOH A 60 124 124 HOH HOH . G 4 HOH A 61 128 128 HOH HOH . G 4 HOH A 62 129 129 HOH HOH . G 4 HOH A 63 130 130 HOH HOH . G 4 HOH A 64 131 131 HOH HOH . G 4 HOH A 65 132 132 HOH HOH . G 4 HOH A 66 134 134 HOH HOH . G 4 HOH A 67 135 135 HOH HOH . G 4 HOH A 68 138 138 HOH HOH . G 4 HOH A 69 139 139 HOH HOH . G 4 HOH A 70 141 141 HOH HOH . G 4 HOH A 71 142 142 HOH HOH . G 4 HOH A 72 146 146 HOH HOH . G 4 HOH A 73 147 147 HOH HOH . G 4 HOH A 74 153 153 HOH HOH . G 4 HOH A 75 154 154 HOH HOH . G 4 HOH A 76 157 157 HOH HOH . G 4 HOH A 77 159 159 HOH HOH . G 4 HOH A 78 161 161 HOH HOH . G 4 HOH A 79 162 162 HOH HOH . G 4 HOH A 80 163 163 HOH HOH . G 4 HOH A 81 165 165 HOH HOH . G 4 HOH A 82 166 166 HOH HOH . G 4 HOH A 83 169 169 HOH HOH . G 4 HOH A 84 174 174 HOH HOH . G 4 HOH A 85 176 176 HOH HOH . G 4 HOH A 86 177 177 HOH HOH . G 4 HOH A 87 181 181 HOH HOH . G 4 HOH A 88 440 440 HOH HOH . G 4 HOH A 89 441 441 HOH HOH . H 4 HOH B 1 4 4 HOH HOH . H 4 HOH B 2 13 13 HOH HOH . H 4 HOH B 3 14 14 HOH HOH . H 4 HOH B 4 15 15 HOH HOH . H 4 HOH B 5 16 16 HOH HOH . H 4 HOH B 6 18 18 HOH HOH . H 4 HOH B 7 24 24 HOH HOH . H 4 HOH B 8 32 32 HOH HOH . H 4 HOH B 9 36 36 HOH HOH . H 4 HOH B 10 37 37 HOH HOH . H 4 HOH B 11 38 38 HOH HOH . H 4 HOH B 12 42 42 HOH HOH . H 4 HOH B 13 43 43 HOH HOH . H 4 HOH B 14 44 44 HOH HOH . H 4 HOH B 15 46 46 HOH HOH . H 4 HOH B 16 47 47 HOH HOH . H 4 HOH B 17 48 48 HOH HOH . H 4 HOH B 18 49 49 HOH HOH . H 4 HOH B 19 50 50 HOH HOH . H 4 HOH B 20 51 51 HOH HOH . H 4 HOH B 21 52 52 HOH HOH . H 4 HOH B 22 54 54 HOH HOH . H 4 HOH B 23 57 57 HOH HOH . H 4 HOH B 24 64 64 HOH HOH . H 4 HOH B 25 70 70 HOH HOH . H 4 HOH B 26 71 71 HOH HOH . H 4 HOH B 27 72 72 HOH HOH . H 4 HOH B 28 77 77 HOH HOH . H 4 HOH B 29 79 79 HOH HOH . H 4 HOH B 30 80 80 HOH HOH . H 4 HOH B 31 81 81 HOH HOH . H 4 HOH B 32 83 83 HOH HOH . H 4 HOH B 33 85 85 HOH HOH . H 4 HOH B 34 91 91 HOH HOH . H 4 HOH B 35 92 92 HOH HOH . H 4 HOH B 36 94 94 HOH HOH . H 4 HOH B 37 95 95 HOH HOH . H 4 HOH B 38 99 99 HOH HOH . H 4 HOH B 39 100 100 HOH HOH . H 4 HOH B 40 105 105 HOH HOH . H 4 HOH B 41 107 107 HOH HOH . H 4 HOH B 42 108 108 HOH HOH . H 4 HOH B 43 119 119 HOH HOH . H 4 HOH B 44 122 122 HOH HOH . H 4 HOH B 45 125 125 HOH HOH . H 4 HOH B 46 126 126 HOH HOH . H 4 HOH B 47 127 127 HOH HOH . H 4 HOH B 48 133 133 HOH HOH . H 4 HOH B 49 136 136 HOH HOH . H 4 HOH B 50 137 137 HOH HOH . H 4 HOH B 51 144 144 HOH HOH . H 4 HOH B 52 145 145 HOH HOH . H 4 HOH B 53 150 150 HOH HOH . H 4 HOH B 54 152 152 HOH HOH . H 4 HOH B 55 155 155 HOH HOH . H 4 HOH B 56 156 156 HOH HOH . H 4 HOH B 57 158 158 HOH HOH . H 4 HOH B 58 167 167 HOH HOH . H 4 HOH B 59 168 168 HOH HOH . H 4 HOH B 60 170 170 HOH HOH . H 4 HOH B 61 171 171 HOH HOH . H 4 HOH B 62 173 173 HOH HOH . H 4 HOH B 63 175 175 HOH HOH . H 4 HOH B 64 179 179 HOH HOH . H 4 HOH B 65 180 180 HOH HOH . H 4 HOH B 66 182 182 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . C 2 -4.069 6.68 26.663 1 20.78 ? P AMP 160 A 1 HETATM 2 O O1P AMP . . . C 2 -4.329 7.285 25.291 1 21.9 ? O1P AMP 160 A 1 HETATM 3 O O2P AMP . . . C 2 -2.69 6.175 26.926 1 20.31 ? O2P AMP 160 A 1 HETATM 4 O O3P AMP . . . C 2 -5.128 5.709 27.143 1 20.59 ? O3P AMP 160 A 1 HETATM 5 O O5' AMP . . . C 2 -4.113 8.027 27.581 1 21.53 ? O5' AMP 160 A 1 HETATM 6 C C5' AMP . . . C 2 -5.292 8.864 27.723 1 17.39 ? C5' AMP 160 A 1 HETATM 7 C C4' AMP . . . C 2 -4.901 10.207 28.358 1 16.54 ? C4' AMP 160 A 1 HETATM 8 O O4' AMP . . . C 2 -4.757 10.088 29.778 1 16.23 ? O4' AMP 160 A 1 HETATM 9 C C3' AMP . . . C 2 -3.568 10.72 27.876 1 18.19 ? C3' AMP 160 A 1 HETATM 10 O O3' AMP . . . C 2 -3.71 12.096 27.493 1 19.54 ? O3' AMP 160 A 1 HETATM 11 C C2' AMP . . . C 2 -2.598 10.596 29.059 1 18.41 ? C2' AMP 160 A 1 HETATM 12 O O2' AMP . . . C 2 -1.54 11.606 29.094 1 16.58 ? O2' AMP 160 A 1 HETATM 13 C C1' AMP . . . C 2 -3.537 10.614 30.263 1 16.98 ? C1' AMP 160 A 1 HETATM 14 N N9 AMP . . . C 2 -3.02 9.805 31.43 1 19.49 ? N9 AMP 160 A 1 HETATM 15 C C8 AMP . . . C 2 -2.237 8.686 31.362 1 16.37 ? C8 AMP 160 A 1 HETATM 16 N N7 AMP . . . C 2 -1.98 8.195 32.578 1 15.32 ? N7 AMP 160 A 1 HETATM 17 C C5 AMP . . . C 2 -2.583 8.993 33.47 1 16.44 ? C5 AMP 160 A 1 HETATM 18 C C6 AMP . . . C 2 -2.705 9.039 34.935 1 16.5 ? C6 AMP 160 A 1 HETATM 19 N N6 AMP . . . C 2 -2.077 8.08 35.675 1 13.46 ? N6 AMP 160 A 1 HETATM 20 N N1 AMP . . . C 2 -3.447 10.05 35.496 1 16.04 ? N1 AMP 160 A 1 HETATM 21 C C2 AMP . . . C 2 -4.059 10.974 34.769 1 14.61 ? C2 AMP 160 A 1 HETATM 22 N N3 AMP . . . C 2 -3.968 10.978 33.43 1 16.79 ? N3 AMP 160 A 1 HETATM 23 C C4 AMP . . . C 2 -3.268 10.049 32.733 1 17.74 ? C4 AMP 160 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #