data_3IV2
#
_model_server_result.job_id            xKfqXLrntrIA1aUqpzkczw 
_model_server_result.datetime_utc      '2024-11-29 01:50:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3iv2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":300}' 
#
_entry.id    3IV2 
#
_exptl.entry_id    3IV2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3IV2 
_cell.length_a            61.959 
_cell.length_b            61.959 
_cell.length_c            206.288 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3IV2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 65 A CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
disulf ? disulf3 A SG CYS 156 A CYS 156 1_555 A SG CYS 209 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf4 B SG CYS 22 B CYS 22 1_555 B SG CYS 65 B CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf5 B SG CYS 56 B CYS 56 1_555 B SG CYS 98 B CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
disulf ? disulf6 B SG CYS 156 B CYS 156 1_555 B SG CYS 209 B CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
covale ? covale1 A ND2 ASN 108 A ASN 108 1_555 C C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
metalc ? metalc1 B O ASP 55 B ASP 55 1_555 H NA NA . B NA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? 
metalc ? metalc2 B N GLY 58 B GLY 58 1_555 H NA NA . B NA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3IV2 
_atom_sites.fract_transf_matrix[1][1]    0.01614 
_atom_sites.fract_transf_matrix[1][2]    0.009318 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018637 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004848 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 301 1 NAG NAG . 
D 3 GOL A 1 303 1 GOL GOL . 
E 3 GOL A 1 306 1 GOL GOL . 
F 4 SO4 A 1 307 1 SO4 SO4 . 
G 4 SO4 A 1 308 2 SO4 SO4 . 
H 5 NA B 1 300 1 NA NA . 
I 3 GOL B 1 302 1 GOL GOL . 
J 3 GOL B 1 304 1 GOL GOL . 
K 3 GOL B 1 305 1 GOL GOL . 
L 4 SO4 B 1 309 3 SO4 SO4 . 
M 4 SO4 B 1 310 4 SO4 SO4 . 
N 6 HOH A 1 401 1 HOH HOH . 
N 6 HOH A 2 403 3 HOH HOH . 
N 6 HOH A 3 404 4 HOH HOH . 
N 6 HOH A 4 406 6 HOH HOH . 
N 6 HOH A 5 409 9 HOH HOH . 
N 6 HOH A 6 410 10 HOH HOH . 
N 6 HOH A 7 412 12 HOH HOH . 
N 6 HOH A 8 413 13 HOH HOH . 
N 6 HOH A 9 415 15 HOH HOH . 
N 6 HOH A 10 421 21 HOH HOH . 
N 6 HOH A 11 423 23 HOH HOH . 
N 6 HOH A 12 427 27 HOH HOH . 
N 6 HOH A 13 429 29 HOH HOH . 
N 6 HOH A 14 430 30 HOH HOH . 
N 6 HOH A 15 431 31 HOH HOH . 
N 6 HOH A 16 435 35 HOH HOH . 
N 6 HOH A 17 436 36 HOH HOH . 
N 6 HOH A 18 439 39 HOH HOH . 
N 6 HOH A 19 440 40 HOH HOH . 
N 6 HOH A 20 443 43 HOH HOH . 
N 6 HOH A 21 446 46 HOH HOH . 
N 6 HOH A 22 448 48 HOH HOH . 
N 6 HOH A 23 450 50 HOH HOH . 
N 6 HOH A 24 454 54 HOH HOH . 
N 6 HOH A 25 456 59 HOH HOH . 
N 6 HOH A 26 458 62 HOH HOH . 
N 6 HOH A 27 462 75 HOH HOH . 
N 6 HOH A 28 464 78 HOH HOH . 
N 6 HOH A 29 466 82 HOH HOH . 
N 6 HOH A 30 468 91 HOH HOH . 
N 6 HOH A 31 469 92 HOH HOH . 
N 6 HOH A 32 470 96 HOH HOH . 
N 6 HOH A 33 473 107 HOH HOH . 
N 6 HOH A 34 475 113 HOH HOH . 
N 6 HOH A 35 478 121 HOH HOH . 
N 6 HOH A 36 479 135 HOH HOH . 
N 6 HOH A 37 481 140 HOH HOH . 
N 6 HOH A 38 482 142 HOH HOH . 
N 6 HOH A 39 483 150 HOH HOH . 
N 6 HOH A 40 484 152 HOH HOH . 
N 6 HOH A 41 485 160 HOH HOH . 
N 6 HOH A 42 486 165 HOH HOH . 
N 6 HOH A 43 488 195 HOH HOH . 
N 6 HOH A 44 492 201 HOH HOH . 
N 6 HOH A 45 493 202 HOH HOH . 
N 6 HOH A 46 494 203 HOH HOH . 
O 6 HOH B 1 402 2 HOH HOH . 
O 6 HOH B 2 405 5 HOH HOH . 
O 6 HOH B 3 408 8 HOH HOH . 
O 6 HOH B 4 411 11 HOH HOH . 
O 6 HOH B 5 414 14 HOH HOH . 
O 6 HOH B 6 416 16 HOH HOH . 
O 6 HOH B 7 418 18 HOH HOH . 
O 6 HOH B 8 422 22 HOH HOH . 
O 6 HOH B 9 424 24 HOH HOH . 
O 6 HOH B 10 425 25 HOH HOH . 
O 6 HOH B 11 432 32 HOH HOH . 
O 6 HOH B 12 445 45 HOH HOH . 
O 6 HOH B 13 447 47 HOH HOH . 
O 6 HOH B 14 449 49 HOH HOH . 
O 6 HOH B 15 455 55 HOH HOH . 
O 6 HOH B 16 457 60 HOH HOH . 
O 6 HOH B 17 459 63 HOH HOH . 
O 6 HOH B 18 460 68 HOH HOH . 
O 6 HOH B 19 461 72 HOH HOH . 
O 6 HOH B 20 463 77 HOH HOH . 
O 6 HOH B 21 465 80 HOH HOH . 
O 6 HOH B 22 467 83 HOH HOH . 
O 6 HOH B 23 471 97 HOH HOH . 
O 6 HOH B 24 472 99 HOH HOH . 
O 6 HOH B 25 474 108 HOH HOH . 
O 6 HOH B 26 476 115 HOH HOH . 
O 6 HOH B 27 477 118 HOH HOH . 
O 6 HOH B 28 480 138 HOH HOH . 
O 6 HOH B 29 487 167 HOH HOH . 
O 6 HOH B 30 489 198 HOH HOH . 
O 6 HOH B 31 490 199 HOH HOH . 
O 6 HOH B 32 491 200 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         H 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               -4.255 
_atom_site.Cartn_y               25.063 
_atom_site.Cartn_z               17.808 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        41.33 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           300 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#